CmoCh12G012760 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G012760
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Arabinogalactan protein 22, putative
Location	Cmo_Chr12: 11301616 .. 11302708 (-)
RNA-Seq Expression	CmoCh12G012760
Synteny	CmoCh12G012760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAGTCCGATGAAGCTAACAGCCGTTCCGATCGTCGGCTTCGTGTTCTTGATTCTTCTGCAATTGGCTTACGGTCACTCCCACGATATTTCCCCGGCGGCGGGTCCTTCGAGCGACGGTGAGTTTTCCGGCGAGTTCTGGCGTTGATTTTTCGTTAGACTAAAAATTTGGTGGATTTCGGTAAATTTTCGATTTAAAAAGTTACAATTTAATTTCAGATTTGAATTTTAGTTTTGAATTTACTTTCAATTAATTTTTTTTAGTTTCAAAATTTTCAATGTACGTTTTAGAATTATTGTCACATAAAATTCTCCACAGTCGCATGAGATCATTCTCTAAATTAGTCGTTGTGAGACTTTCATCATCCAACATCTCCCCTCAAACAAAAACACGTCTCCCCTTAATCAATAATTGACTTCTTTGGAGTCTTAGTCATTTTTTACTACCTTCAAAGAAGCTTGTCTCCTTTTTCTTTCATCATTTAACACCTCTCCGCGAACAAAAACACGCCTCCCTTTAGGCTCGACTCCTTTGGAGTCTTAGTGATTTTTACTGCTTCTTGACTTTGTCTCACGTACATGTGATTCCCTAAACTAGAACAATCATGTCATAAATAAATAGAAATCAGAATTAAATTAAAATTTTTAAAATGATAATAACCAAATTGAAATTTTATTGAAATTAAGGGATTGAATTTACAATTTATTGTGTTATTGTTTGTTGTTGCAGGCGCTGCAATTGACCAAGGAATTGCTTACGTTCTTCTTATGGTTGCTCTCGCGGTTACCTACATTTTCCATTGATAATTCTTACGGCGTTTGGATATGTAATTTTTATTTTATTTTGTAGTTTTTTCTCCGTTTATTGGTGAAGAAATTGCTATTATAATACTTGAAATTCATTATTCTTTATTTACTTATAAATATAATTTGCTTTGTTAATTAGGGGATAATATAGCTTTTGCCACGTGTTACAATCTAATTAAATCTAATTAAATCAAATTAATTGTAATTTTAAAAATTGAGCTGATAATATTACTCTTCACTACTACATTTTATTATTTTGAAAAATTGAGAAAGTGAGATGGGAG

mRNA sequence

ATGATGAGTCCGATGAAGCTAACAGCCGTTCCGATCGTCGGCTTCGTGTTCTTGATTCTTCTGCAATTGGCTTACGGTCACTCCCACGATATTTCCCCGGCGGCGGGTCCTTCGAGCGACGGCGCTGCAATTGACCAAGGAATTGCTTACGTTCTTCTTATGGTTGCTCTCGCGGTTACCTACATTTTCCATTGATAATTCTTACGGCGTTTGGATATGTAATTTTTATTTTATTTTGTAGTTTTTTCTCCGTTTATTGGTGAAGAAATTGCTATTATAATACTTGAAATTCATTATTCTTTATTTACTTATAAATATAATTTGCTTTGTTAATTAGGGGATAATATAGCTTTTGCCACGTGTTACAATCTAATTAAATCTAATTAAATCAAATTAATTGTAATTTTAAAAATTGAGCTGATAATATTACTCTTCACTACTACATTTTATTATTTTGAAAAATTGAGAAAGTGAGATGGGAG

Coding sequence (CDS)

ATGATGAGTCCGATGAAGCTAACAGCCGTTCCGATCGTCGGCTTCGTGTTCTTGATTCTTCTGCAATTGGCTTACGGTCACTCCCACGATATTTCCCCGGCGGCGGGTCCTTCGAGCGACGGCGCTGCAATTGACCAAGGAATTGCTTACGTTCTTCTTATGGTTGCTCTCGCGGTTACCTACATTTTCCATTGA

Protein sequence

MMSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH

Homology

[Close]

BLAST of CmoCh12G012760 vs. ExPASy Swiss-Prot
Match: Q9FK16 (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.3e-09
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 2  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTY 61
          M+ +K     +  FV + ++ L    SH  SPA  P+SDG +IDQGIAYVL+MVALA+TY
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 62 IFH 65
            H
Sbjct: 61 FIH 63

[Close]

BLAST of CmoCh12G012760 vs. ExPASy Swiss-Prot
Match: Q8L9T8 (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.1e-08
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 12 IVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH 65
          IV  +F ILL +A  H+   +PA  P+SDG  IDQGIAYVL++VAL +TY+ H
Sbjct: 13 IVSIIFAILLPMA--HAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63

[Close]

BLAST of CmoCh12G012760 vs. ExPASy Swiss-Prot
Match: O82337 (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 9.1e-08
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 1  MMSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVT 60
          M S   +T   +  FVF ++L LA   S  ++PA  P+SDG +IDQGIAY+L++VAL +T
Sbjct: 1  MASRNSVTGFALFSFVFAVILSLAGAQS--LAPAPAPTSDGTSIDQGIAYLLMVVALVLT 60

Query: 61 YIFH 65
          Y+ H
Sbjct: 61 YLIH 62

[Close]

BLAST of CmoCh12G012760 vs. ExPASy Swiss-Prot
Match: Q9M373 (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.2e-06
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 1  MMSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVT 60
          M S   +  + +  FVF ++   A   S  ++PA  P+SDG +IDQGIAY+L++VAL +T
Sbjct: 1  MASRNSVAVIALFAFVFAVISPFAGAQS--LAPAPSPTSDGTSIDQGIAYLLMVVALVLT 60

Query: 61 YIFH 65
          Y+ H
Sbjct: 61 YLIH 62

[Close]

BLAST of CmoCh12G012760 vs. ExPASy TrEMBL
Match: A0A0A0LIU0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004710 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.3e-20
Identity = 54/63 (85.71%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 2  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTY 61
          MS +KLTAVPIVGF+FLI+LQLA+GHSHDISPAAGPS+DGAAIDQGIAYVLL++ALAVTY
Sbjct: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60

Query: 62 IFH 65
          I H
Sbjct: 61 IVH 63

[Close]

BLAST of CmoCh12G012760 vs. ExPASy TrEMBL
Match: A0A5A7V7C0 (Putative Arabinogalactan protein 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00220 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-19
Identity = 51/63 (80.95%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 2  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTY 61
          MS +KLTAVP VGF+FLI+LQLA+GHSHDISPA GPS+DGAAIDQGIAYVLL++ALA+TY
Sbjct: 1  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITY 60

Query: 62 IFH 65
          I H
Sbjct: 61 IIH 63

[Close]

BLAST of CmoCh12G012760 vs. ExPASy TrEMBL
Match: A0A067KBQ4 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_07227 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.5e-13
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 2  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAA-GPSSDGAAIDQGIAYVLLMVALAVT 61
          MSPM L A+PI+GF+FL LLQL +G +   SPAA GPSSDG  IDQGIAYVL++VALAVT
Sbjct: 1  MSPMNLYALPIIGFMFLALLQLGHGQAIAPSPAAEGPSSDGNTIDQGIAYVLMLVALAVT 60

Query: 62 YIFH 65
          Y+FH
Sbjct: 61 YLFH 64

[Close]

BLAST of CmoCh12G012760 vs. ExPASy TrEMBL
Match: A0A3N7G6R6 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G078801 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-12
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 2  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTY 61
          MS M+L A+PI+GF+FL LL+  +G     SPA GP++DG  IDQGIAYVLLM+ALA+TY
Sbjct: 1  MSSMRLHALPIIGFMFLALLEFGFGQGTAPSPAEGPTNDGKTIDQGIAYVLLMLALAITY 60

Query: 62 IFH 65
          +FH
Sbjct: 61 LFH 63

[Close]

BLAST of CmoCh12G012760 vs. ExPASy TrEMBL
Match: A0A2C9W3S5 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G019400 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.8e-12
Identity = 42/64 (65.62%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 2  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPA-AGPSSDGAAIDQGIAYVLLMVALAVT 61
          MSPMKL  +PI+G VFL L+QL+YG     SPA  GPSSDG AIDQGIA++L++VALAVT
Sbjct: 1  MSPMKLFGLPIIGLVFLALMQLSYGQGVAPSPAPEGPSSDGNAIDQGIAFILMLVALAVT 60

Query: 62 YIFH 65
          Y+ H
Sbjct: 61 YLIH 64

[Close]

BLAST of CmoCh12G012760 vs. TAIR 10
Match: AT5G53250.1 (arabinogalactan protein 22 )

HSP 1 Score: 60.8 bits (146), Expect = 4.5e-10
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 2  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTY 61
          M+ +K     +  FV + ++ L    SH  SPA  P+SDG +IDQGIAYVL+MVALA+TY
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 62 IFH 65
            H
Sbjct: 61 FIH 63

[Close]

BLAST of CmoCh12G012760 vs. TAIR 10
Match: AT5G24105.1 (arabinogalactan protein 41 )

HSP 1 Score: 58.2 bits (139), Expect = 2.9e-09
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 12 IVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH 65
          IV  +F ILL +A  H+   +PA  P+SDG  IDQGIAYVL++VAL +TY+ H
Sbjct: 13 IVSIIFAILLPMA--HAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63

[Close]

BLAST of CmoCh12G012760 vs. TAIR 10
Match: AT2G46330.1 (arabinogalactan protein 16 )

HSP 1 Score: 57.0 bits (136), Expect = 6.5e-09
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 1  MMSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVT 60
          M S   +T   +  FVF ++L LA   S  ++PA  P+SDG +IDQGIAY+L++VAL +T
Sbjct: 1  MASRNSVTGFALFSFVFAVILSLAGAQS--LAPAPAPTSDGTSIDQGIAYLLMVVALVLT 60

Query: 61 YIFH 65
          Y+ H
Sbjct: 61 YLIH 62

[Close]

BLAST of CmoCh12G012760 vs. TAIR 10
Match: AT3G61640.1 (arabinogalactan protein 20 )

HSP 1 Score: 52.4 bits (124), Expect = 1.6e-07
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 1  MMSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVT 60
          M S   +  + +  FVF ++   A   S  ++PA  P+SDG +IDQGIAY+L++VAL +T
Sbjct: 1  MASRNSVAVIALFAFVFAVISPFAGAQS--LAPAPSPTSDGTSIDQGIAYLLMVVALVLT 60

Query: 61 YIFH 65
          Y+ H
Sbjct: 61 YLIH 62

The following BLAST results are available for this feature:

BLAST of CmoCh12G012760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FK16	6.3e-09	49.21	Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1	[more]
Q8L9T8	4.1e-08	54.72	Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1	[more]
O82337	9.1e-08	46.88	Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1	[more]
Q9M373	2.2e-06	42.19	Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1	[more]

BLAST of CmoCh12G012760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIU0	1.3e-20	85.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004710 PE=4 SV=1	[more]
A0A5A7V7C0	1.1e-19	80.95	Putative Arabinogalactan protein 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A067KBQ4	1.5e-13	70.31	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_07227 PE=4 SV=1	[more]
A0A3N7G6R6	1.7e-12	61.90	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G078801 PE=4 ...	[more]
A0A2C9W3S5	2.8e-12	65.63	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G019400 PE=4 SV=...	[more]

BLAST of CmoCh12G012760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53250.1	4.5e-10	49.21	arabinogalactan protein 22	[more]
AT5G24105.1	2.9e-09	54.72	arabinogalactan protein 41	[more]
AT2G46330.1	6.5e-09	46.88	arabinogalactan protein 16	[more]
AT3G61640.1	1.6e-07	42.19	arabinogalactan protein 20	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009424	Arabinogalactan protein 16/20/22/41	PFAM	PF06376	AGP	coord: 33..64 e-value: 3.2E-17 score: 62.1
IPR009424	Arabinogalactan protein 16/20/22/41	PANTHER	PTHR33374	ARABINOGALACTAN PROTEIN 20	coord: 1..64
None	No IPR available	PANTHER	PTHR33374:SF7	ARABINOGALACTAN PEPTIDE 22	coord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G012760.1	CmoCh12G012760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane