CmoCh12G012520 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G012520
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Heat shock protein DnaJ, cysteine-rich domain containing protein
Location	Cmo_Chr12: 11092088 .. 11092588 (+)
RNA-Seq Expression	CmoCh12G012520
Synteny	CmoCh12G012520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGCTCCCTAGTTCACCAGAAAATGGTACCAAGGCAATTGCGAACAATCTTCACCGGCGCCGCCGTAATCTTCGGCGGACTTTTCACTCTTAGGTTCGCTTCATTTCTCACTATCCAAACGCTCCGCCACACCGCCGAAGCCAAACGGGTAATTCATTTTTCTCTACGAATACACATCTTTCTTTAAAATTAAACTTATACATTGGGAATGGAAGAAGGCTCGTTAATTCTGAATCATTTCTTTGATACTATTCTATTCGGATCTTCAATTTTTCGGCAGAGAAAAATCGCTTTACCCTGTAGGGCTTGTAGAGGAAAAGGATTCTATATCTGCAAATTATGCCGCGGAAATGCAGTCATTCAGTGGTCGCCATTGTCCGATCCTATTGCCATGAACCCCTGCGTGTGCCCGACTTGTGAAGGAAATAGGTTATACTTTTCACCCCCTTTGATCTCGCCTGCTGCTGCTTGTTAGAATTTTCGCAGGATTAGGTTAATGGC

mRNA sequence

CAGCTCCCTAGTTCACCAGAAAATGGTACCAAGGCAATTGCGAACAATCTTCACCGGCGCCGCCGTAATCTTCGGCGGACTTTTCACTCTTAGGTTCGCTTCATTTCTCACTATCCAAACGCTCCGCCACACCGCCGAAGCCAAACGGAGAAAAATCGCTTTACCCTGTAGGGCTTGTAGAGGAAAAGGATTCTATATCTGCAAATTATGCCGCGGAAATGCAGTCATTCAGTGGTCGCCATTGTCCGATCCTATTGCCATGAACCCCTGCGTGTGCCCGACTTGTGAAGGAAATAGGTTATACTTTTCACCCCCTTTGATCTCGCCTGCTGCTGCTTGTTAGAATTTTCGCAGGATTAGGTTAATGGC

Coding sequence (CDS)

ATGGTACCAAGGCAATTGCGAACAATCTTCACCGGCGCCGCCGTAATCTTCGGCGGACTTTTCACTCTTAGGTTCGCTTCATTTCTCACTATCCAAACGCTCCGCCACACCGCCGAAGCCAAACGGAGAAAAATCGCTTTACCCTGTAGGGCTTGTAGAGGAAAAGGATTCTATATCTGCAAATTATGCCGCGGAAATGCAGTCATTCAGTGGTCGCCATTGTCCGATCCTATTGCCATGAACCCCTGCGTGTGCCCGACTTGTGAAGGAAATAGGTTATACTTTTCACCCCCTTTGATCTCGCCTGCTGCTGCTTGTTAG

Protein sequence

MVPRQLRTIFTGAAVIFGGLFTLRFASFLTIQTLRHTAEAKRRKIALPCRACRGKGFYICKLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRLYFSPPLISPAAAC

Homology

[Close]

BLAST of CmoCh12G012520 vs. ExPASy TrEMBL
Match: A0A6J1CNQ8 (uncharacterized protein LOC111012944 OS=Momordica charantia OX=3673 GN=LOC111012944 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.4e-42
Identity = 83/93 (89.25%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MVPRQLRTIFTGAAVIFGGLFTLRFASFLTIQTLRHTAEAKRRKIALPCRACRGKGFYIC 60
          M+PRQLRT+FTGAAVI GG+ TL FASFLTIQTLR TAEAKRRKIALPC+ACRGKGFYIC
Sbjct: 1  MIPRQLRTVFTGAAVILGGICTLNFASFLTIQTLRLTAEAKRRKIALPCKACRGKGFYIC 60

Query: 61 KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRL 94
          KLCRGNAVI WSPLSDPIAMNPCVCPTCEGNR+
Sbjct: 61 KLCRGNAVIHWSPLSDPIAMNPCVCPTCEGNRV 93

[Close]

BLAST of CmoCh12G012520 vs. ExPASy TrEMBL
Match: A0A1S3C6K9 (uncharacterized protein LOC103497424 OS=Cucumis melo OX=3656 GN=LOC103497424 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.4e-42
Identity = 84/93 (90.32%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MVPRQLRTIFTGAAVIFGGLFTLRFASFLTIQTLRHTAEAKRRKIALPCRACRGKGFYIC 60
          M+PRQLRTIFTGAAVI GG+ TL  ASFLTIQTLR TAEAKRRKIALPC+ACRGKGFYIC
Sbjct: 1  MIPRQLRTIFTGAAVILGGICTLNLASFLTIQTLRLTAEAKRRKIALPCKACRGKGFYIC 60

Query: 61 KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRL 94
          KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNR+
Sbjct: 61 KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRV 93

[Close]

BLAST of CmoCh12G012520 vs. ExPASy TrEMBL
Match: A0A5D3BFD4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00060 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 5.7e-42
Identity = 84/92 (91.30%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MVPRQLRTIFTGAAVIFGGLFTLRFASFLTIQTLRHTAEAKRRKIALPCRACRGKGFYIC 60
          M+PRQLRTIFTGAAVI GG+ TL  ASFLTIQTLR TAEAKRRKIALPC+ACRGKGFYIC
Sbjct: 1  MIPRQLRTIFTGAAVILGGICTLNLASFLTIQTLRLTAEAKRRKIALPCKACRGKGFYIC 60

Query: 61 KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNR 93
          KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNR
Sbjct: 61 KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNR 92

[Close]

BLAST of CmoCh12G012520 vs. ExPASy TrEMBL
Match: A0A0A0LI05 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006050 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.8e-41
Identity = 82/93 (88.17%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MVPRQLRTIFTGAAVIFGGLFTLRFASFLTIQTLRHTAEAKRRKIALPCRACRGKGFYIC 60
          M+PRQLRTIFTGAAVI GG+ TL  ASFLTIQTLR TAEAKRRKI LPC+ACRGKGFY+C
Sbjct: 1  MIPRQLRTIFTGAAVILGGICTLNLASFLTIQTLRVTAEAKRRKIGLPCKACRGKGFYMC 60

Query: 61 KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRL 94
          KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNR+
Sbjct: 61 KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRV 93

[Close]

BLAST of CmoCh12G012520 vs. ExPASy TrEMBL
Match: A0A6P4BUI7 (uncharacterized protein LOC107435933 OS=Ziziphus jujuba OX=326968 GN=LOC107435933 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.7e-34
Identity = 66/93 (70.97%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 1  MVPRQLRTIFTGAAVIFGGLFTLRFASFLTIQTLRHTAEAKRRKIALPCRACRGKGFYIC 60
          M+P+QLRT+ TGAAVI GG+FTL   S  TI TLR   EAKRRK+ALPCR C+GKGFYIC
Sbjct: 1  MIPKQLRTMATGAAVILGGIFTLNLVSSATIATLRLATEAKRRKVALPCRVCKGKGFYIC 60

Query: 61 KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRL 94
          +LC+GNA IQWSPL DP+A+NPC+CPTC+GNR+
Sbjct: 61 RLCKGNATIQWSPLYDPVAINPCLCPTCDGNRV 93

The following BLAST results are available for this feature:

BLAST of CmoCh12G012520 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh12G012520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNQ8	4.4e-42	89.25	uncharacterized protein LOC111012944 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A1S3C6K9	4.4e-42	90.32	uncharacterized protein LOC103497424 OS=Cucumis melo OX=3656 GN=LOC103497424 PE=...	[more]
A0A5D3BFD4	5.7e-42	91.30	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LI05	2.8e-41	88.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006050 PE=4 SV=1	[more]
A0A6P4BUI7	5.7e-34	70.97	uncharacterized protein LOC107435933 OS=Ziziphus jujuba OX=326968 GN=LOC10743593...	[more]

BLAST of CmoCh12G012520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR15852:SF63	BNAA02G17140D PROTEIN	coord: 12..93
None	No IPR available	PANTHER	PTHR15852	PLASTID TRANSCRIPTIONALLY ACTIVE PROTEIN	coord: 12..93
IPR036410	Heat shock protein DnaJ, cysteine-rich domain superfamily	SUPERFAMILY	57938	DnaJ/Hsp40 cysteine-rich domain	coord: 44..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G012520.1	CmoCh12G012520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane