CmoCh12G012510 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G012510
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	zinc finger CCCH domain-containing protein 39-like
Location	Cmo_Chr12: 11088182 .. 11090447 (+)
RNA-Seq Expression	CmoCh12G012510
Synteny	CmoCh12G012510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTGAATACGTTCAATTTTGGCGATTTGAGATTCCATGGATTTGAATTTTTAGCCTTCGCAATATCTGATTTTTCTAGGGTTTTCTTTCTCCTTGGCGGCTAGGGTTTTTGATTCTTGGATCAGTTTTGTTTTCCTTTTCCCGTTTTTTCGTCGTTCTTACATTTGTCTTCCATTTTGCCGCTTTCAAAATATATAAATATATAATCACCAGTCCTCCACTTTCACCATTGCTTTGATTTGATTCCGTCTTCCATTTATCTCGATTCCGCCGGCATATGCGTTTCCGAACGCTGTTTTGATGATTATTTGAAACTGACGCTTTTGTTCCTTGGACGAATTCGACTTTGATTTTGGTCAGTATCATCTGTGTTCTTCTTTCCGAGGCTGTTTTTGGTACTCTTTTCGATTATTTTTGTGGATATCTCCTTTAGTCAATTGTTTTTCTGGTGTTTCATCACATTGGTACAAGCGTTGGTTTTGTAAGGAATTTTGTTCTGTGATCGTTGTTCAAGCAGAGTTTGTAATTTATTCTCCACATTGAAATTTAAGGTTGTTGATTCGTTGTGTTTATTGATCGAAGAGATCTGGATTTGATTTTAGAAGATGAGTTTCAATGATATTCGAGGCTCTGTTATACCGCCGCCTCTGCATCCTTATGGAGCCAGCGATGCCACTGGTTGCTGGTCTCAGTATCCTAGGAACGATCTATTTGATACACAATCGCAATTTGAACCACAGCTGCCTCCATTCAAAAGAGCTAGAAATTCTGAAGAAAACCTATCTAGAGTTCAAAATGGTCCAGTGAATAAAGGAATAAACAATATCTTCTTCAAGACAAGGATGTGTGCGAAATTCAAGCTTGGTTTGTGTAGGAATGGAGCGAATTGCAACTTTGCTCATGGTGCTGAAGACATGCGACAACCCCCACCAAATTGGCAAGAAATTGTGGGGATTCGTGAGGATGATCAATCAGTAAGTAACTGGAATGATGATCAGAAAATTATTCAGAAAATGAAGCTGTGTAGGAAGTTTTATAATGGGGAGGAATGCCCTTATGGAGATAGGTGCAATTTTCTTCATGAAGATCCTGCTAAATTTAGAGATGATTCTGGTAGGTTTAGGGAAAGTTCAGCTATAAGCATTGGAACTACTGTAACTCCATTGATGAATGGTAATGATTCTAGCTATTCTGAACCTAGCAGAGCTGTTTCTTGTTCTGCTTCTGCTTCTGATTCTCTTCGAGGTAATGGAAATGCATTCTGGAAGACGAAGTTATGCACTAAGTGGGAGGTTACTGGTCATTGCCCCTTTGGTGATAAGTGCCATTTTGCTCATGGCCAATCTGGTATTGATACCTCTCCTTTTCTCTTTCTCTGTAATGTGTAATACTGTCATAACATGTGGATTGGAATTCTGATTAGCCATTTGATGAACTGAAAATCATGATATGCTTTGAATGTTCTTCATAGTTAACACAACCATGTTCAAACACATTTGTTTCTTCTTGAGCATTCGAAAGTCGTTCCAAACAAACTCTTAATTTATTTAGTATCTTTGTCTTGGCATCCTCTTTGAAGCGTTTGACATTGTGATTATACAACTTTGGGATGTTGAGATGTTGACTGTTCTTTATGGATCAGAAAAGTTGTTCCAAACAAACTCTTAATTTCCTCTGTTCTTTATGGATCAGAAAAGTTGTTCCAAACAAACTCTTAATTTCCTCTGTTCTTTATGGATCAGAAAAGTCTTCCAAACAAACTCTTAATTTCCTCTTTGGAGCGTTTGACATTGTGTGATTATACTACTTCGGGATGTTGACTGTTCTTTATGGATCAGAGTTACAACTCTCTCTTGGACGCGAGGGGGAAGTATCTAATCCTGCCCTCAACATTAATCCTGTAGTTGTGGCCATGGAAGCATCTCCGAGTTTGGCAGCGAGTGTCGCGACCTCTCCCCTACCAGAGGGTCAGGCGAAGCCGTGCTTGCTGAAATGGAAAGGACCCAAGAAGATAAATCGGATCTATGCCGATTGGCTTGATGATTTGCCTCTATCTCCAACCTCAGCCAGCAAATTGGAGGTTTGAGTGTTTTTGAGTTGGAAGTTGTTTGTTCTTGTTTTGTTTTGAAATTGGTTTGGTGAGATTCAATTGATTAGTTTCAATATGGGGGTTGGGTTGGTGCTGGTTTTTTCCGAGTCATTGAGTGTAAAATAGCAGTTTTGCTGAGAATTTTTTAGGGGGTATGGAAAGAAGAGAGAGAGATA

mRNA sequence

GTTTTGAATACGTTCAATTTTGGCGATTTGAGATTCCATGGATTTGAATTTTTAGCCTTCGCAATATCTGATTTTTCTAGGGTTTTCTTTCTCCTTGGCGGCTAGGGTTTTTGATTCTTGGATCAGTTTTGTTTTCCTTTTCCCGTTTTTTCGTCGTTCTTACATTTGTCTTCCATTTTGCCGCTTTCAAAATATATAAATATATAATCACCAGTCCTCCACTTTCACCATTGCTTTGATTTGATTCCGTCTTCCATTTATCTCGATTCCGCCGGCATATGCGTTTCCGAACGCTGTTTTGATGATTATTTGAAACTGACGCTTTTGTTCCTTGGACGAATTCGACTTTGATTTTGGTCAGTATCATCTGTGTTCTTCTTTCCGAGGCTGTTTTTGGTACTCTTTTCGATTATTTTTGTGGATATCTCCTTTAGTCAATTGTTTTTCTGGTGTTTCATCACATTGGTACAAGCGTTGGTTTTGTAAGGAATTTTGTTCTGTGATCGTTGTTCAAGCAGAGTTTGTAATTTATTCTCCACATTGAAATTTAAGGTTGTTGATTCGTTGTGTTTATTGATCGAAGAGATCTGGATTTGATTTTAGAAGATGAGTTTCAATGATATTCGAGGCTCTGTTATACCGCCGCCTCTGCATCCTTATGGAGCCAGCGATGCCACTGGTTGCTGGTCTCAGTATCCTAGGAACGATCTATTTGATACACAATCGCAATTTGAACCACAGCTGCCTCCATTCAAAAGAGCTAGAAATTCTGAAGAAAACCTATCTAGAGTTCAAAATGGTCCAGTGAATAAAGGAATAAACAATATCTTCTTCAAGACAAGGATGTGTGCGAAATTCAAGCTTGGTTTGTGTAGGAATGGAGCGAATTGCAACTTTGCTCATGGTGCTGAAGACATGCGACAACCCCCACCAAATTGGCAAGAAATTGTGGGGATTCGTGAGGATGATCAATCAGTAAGTAACTGGAATGATGATCAGAAAATTATTCAGAAAATGAAGCTGTGTAGGAAGTTTTATAATGGGGAGGAATGCCCTTATGGAGATAGGTGCAATTTTCTTCATGAAGATCCTGCTAAATTTAGAGATGATTCTGGTAGGTTTAGGGAAAGTTCAGCTATAAGCATTGGAACTACTGTAACTCCATTGATGAATGGTAATGATTCTAGCTATTCTGAACCTAGCAGAGCTGTTTCTTGTTCTGCTTCTGCTTCTGATTCTCTTCGAGGTAATGGAAATGCATTCTGGAAGACGAAGTTATGCACTAAGTGGGAGGTTACTGGTCATTGCCCCTTTGGTGATAAGTGCCATTTTGCTCATGGCCAATCTGAGTTACAACTCTCTCTTGGACGCGAGGGGGAAGTATCTAATCCTGCCCTCAACATTAATCCTGTAGTTGTGGCCATGGAAGCATCTCCGAGTTTGGCAGCGAGTGTCGCGACCTCTCCCCTACCAGAGGGTCAGGCGAAGCCGTGCTTGCTGAAATGGAAAGGACCCAAGAAGATAAATCGGATCTATGCCGATTGGCTTGATGATTTGCCTCTATCTCCAACCTCAGCCAGCAAATTGGAGGTTTGAGTGTTTTTGAGTTGGAAGTTGTTTGTTCTTGTTTTGTTTTGAAATTGGTTTGGTGAGATTCAATTGATTAGTTTCAATATGGGGGTTGGGTTGGTGCTGGTTTTTTCCGAGTCATTGAGTGTAAAATAGCAGTTTTGCTGAGAATTTTTTAGGGGGTATGGAAAGAAGAGAGAGAGATA

Coding sequence (CDS)

ATGAGTTTCAATGATATTCGAGGCTCTGTTATACCGCCGCCTCTGCATCCTTATGGAGCCAGCGATGCCACTGGTTGCTGGTCTCAGTATCCTAGGAACGATCTATTTGATACACAATCGCAATTTGAACCACAGCTGCCTCCATTCAAAAGAGCTAGAAATTCTGAAGAAAACCTATCTAGAGTTCAAAATGGTCCAGTGAATAAAGGAATAAACAATATCTTCTTCAAGACAAGGATGTGTGCGAAATTCAAGCTTGGTTTGTGTAGGAATGGAGCGAATTGCAACTTTGCTCATGGTGCTGAAGACATGCGACAACCCCCACCAAATTGGCAAGAAATTGTGGGGATTCGTGAGGATGATCAATCAGTAAGTAACTGGAATGATGATCAGAAAATTATTCAGAAAATGAAGCTGTGTAGGAAGTTTTATAATGGGGAGGAATGCCCTTATGGAGATAGGTGCAATTTTCTTCATGAAGATCCTGCTAAATTTAGAGATGATTCTGGTAGGTTTAGGGAAAGTTCAGCTATAAGCATTGGAACTACTGTAACTCCATTGATGAATGGTAATGATTCTAGCTATTCTGAACCTAGCAGAGCTGTTTCTTGTTCTGCTTCTGCTTCTGATTCTCTTCGAGGTAATGGAAATGCATTCTGGAAGACGAAGTTATGCACTAAGTGGGAGGTTACTGGTCATTGCCCCTTTGGTGATAAGTGCCATTTTGCTCATGGCCAATCTGAGTTACAACTCTCTCTTGGACGCGAGGGGGAAGTATCTAATCCTGCCCTCAACATTAATCCTGTAGTTGTGGCCATGGAAGCATCTCCGAGTTTGGCAGCGAGTGTCGCGACCTCTCCCCTACCAGAGGGTCAGGCGAAGCCGTGCTTGCTGAAATGGAAAGGACCCAAGAAGATAAATCGGATCTATGCCGATTGGCTTGATGATTTGCCTCTATCTCCAACCTCAGCCAGCAAATTGGAGGTTTGA

Protein sequence

MSFNDIRGSVIPPPLHPYGASDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENLSRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDKCHFAHGQSELQLSLGREGEVSNPALNINPVVVAMEASPSLAASVATSPLPEGQAKPCLLKWKGPKKINRIYADWLDDLPLSPTSASKLEV

Homology

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BLAST of CmoCh12G012510 vs. ExPASy Swiss-Prot
Match: Q9LT81 (Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=At3g19360 PE=2 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 5.6e-77
Identity = 165/345 (47.83%), Postives = 203/345 (58.84%), Query Frame = 0


Query: 33  NDLFDTQSQFEPQ---LPPFKRARNSEENLSRVQNG------------------PVNKGI 92
           + L ++QSQ +P     P  KR R  ++NL    +                   PVNKG 
Sbjct: 41  HSLSESQSQSQPSQQLQPALKRPRLVDDNLFNPASSFPQPSSSNPWMVPSLNPPPVNKGT 100

Query: 93  NNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVG------------IRE 152
            NIF+KTRMCAKF+ G CRNG  CNFAHG ED+RQPP NWQEIVG             RE
Sbjct: 101 ANIFYKTRMCAKFRAGTCRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERERERE 160

Query: 153 DDQS--------VSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGR 212
            ++          +NW DDQKII +MKLCRKF  GEECPYGDRCNF+HED +KFR+DSG+
Sbjct: 161 RERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGK 220

Query: 213 FRESSAISIGTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRG-NGNAFWKTKLCTKWEV 272
            RESS IS+G T     +   S+  E +R  S    A  +  G     +WKT+LC K+++
Sbjct: 221 LRESSVISVGATAADQPSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDI 280

Query: 273 TGHCPFGDKCHFAHGQSELQLSLGR-EGEVSNPALNIN--PVVVAMEA---SPSLAASVA 329
           TG CPFGDKCHFAHGQ+EL  S+GR EGE  N   ++N   VV A EA    P    +  
Sbjct: 281 TGQCPFGDKCHFAHGQAELHNSVGRVEGEAMNAVASVNKQAVVPANEAFAMKPITQVTAD 340

[Close]

BLAST of CmoCh12G012510 vs. ExPASy Swiss-Prot
Match: Q84UQ3 (Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0159800 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.3e-45
Identity = 109/321 (33.96%), Postives = 158/321 (49.22%), Query Frame = 0


Query: 45  QLPPFKRARNSEENLSRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDM 104
           Q PP K++R          N   ++ I  +FFKT++C KF+ G C    NCNFAHG E++
Sbjct: 58  QPPPGKKSRGGGGG-EGGGNTSKSRAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHGMEEL 117

Query: 105 RQPPPNWQEIVGIREDDQSVSNWNDDQKI--------------------------IQKMK 164
           R+PPPNWQEIV   E+    +   ++ +I                            K +
Sbjct: 118 RKPPPNWQEIVAAHEE---ATEAREEHQIPIMTSSGPTAGGDAGCGGGGGGGSGRAYKGR 177

Query: 165 LCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGTTVTPLMNGNDSSYSEP 224
            C+KFY  E CPYGD C FLH       D+  + RES AIS+  +V     G   SY+  
Sbjct: 178 HCKKFYTDEGCPYGDACTFLH-------DEQSKARESVAISLSPSVGG--GGGGGSYNSA 237

Query: 225 SRAVSCSASASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDKCHFAHGQSELQLSLGREGE 284
           + A + +++A+ +      + WKT++C KWE+TG+CPFG KCHFAHG +EL    G   +
Sbjct: 238 AAAAASASAAAGNGPMQKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHKYGGGLVD 297

Query: 285 VSNPALNINP---VVVAMEASPSLAASVATSPLP--------------------EGQAKP 317
           + +      P     V    +P+  A+ +T+ LP                     GQ + 
Sbjct: 298 IDSRDAAATPDSKQAVVSAKAPAETAAASTTVLPHADVYHLGVQAQRSTIAGQRSGQVQR 357

[Close]

BLAST of CmoCh12G012510 vs. ExPASy Swiss-Prot
Match: Q9LQM3 (Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=At1g32360 PE=2 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.0e-43
Identity = 116/360 (32.22%), Postives = 162/360 (45.00%), Query Frame = 0


Query: 22  DATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENLSRVQNGPVN---KGINNIFFKT 81
           D    W+  P N   D         PP K+ R S  + S       +   K I  +FFKT
Sbjct: 41  DYNRAWAMNPDNTSGDNNG------PPNKKTRGSPSSSSATTTSAASNRTKAIGKMFFKT 100

Query: 82  RMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIREDDQSVSNWNDDQKIIQ--- 141
           ++C KF+ G C    NCNFAH  E++R+PPPNWQEIV   E+++S         +++   
Sbjct: 101 KLCCKFRAGTCPYITNCNFAHTVEELRRPPPNWQEIVAAHEEERSGGMGTPTVSVVEIPR 160

Query: 142 -------------------KMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESS 201
                              K + C+KFY  E CPYG+ C FLH       D++ R RES 
Sbjct: 161 EEFQIPSLVSSTAESGRSFKGRHCKKFYTEEGCPYGESCTFLH-------DEASRNRESV 220

Query: 202 AISIGTTVTPLMNGNDSSYSEPSRAVSCSASASDSL-------RGNGNAF-------WKT 261
           AIS+G    P   G+         +V    S+S+ +        G+G+         WKT
Sbjct: 221 AISLG----PGGYGSGGGGGSGGGSVGGGGSSSNVVVLGGGGGSGSGSGIQILKPSNWKT 280

Query: 262 KLCTKWEVTGHCPFGDKCHFAHGQSELQL-------SLGREGEVSNPALN---------- 318
           ++C KWE+TG+CPFG KCHFAHG +EL           G++G   NP             
Sbjct: 281 RICNKWEITGYCPFGAKCHFAHGAAELHRFGGGLVEEEGKDGVSPNPDTKQTVQNPKGLS 340

[Close]

BLAST of CmoCh12G012510 vs. ExPASy Swiss-Prot
Match: Q5PP65 (Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN=At2g35430 PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 7.9e-23
Identity = 81/283 (28.62%), Postives = 113/283 (39.93%), Query Frame = 0


Query: 57  ENLSRVQNGPVNKGINNIFFKTRMCAKFKLGLC-RNGANCNFAHGAEDMR---QPPPNWQ 116
           E+ S+      +  I   FFKT++C KF+ G C  + ++C+FAH AE++R    PPPNWQ
Sbjct: 53  ESPSKKTRSSSSSEIGKSFFKTKLCFKFRAGTCPYSASSCHFAHSAEELRLPPPPPPNWQ 112

Query: 117 EIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRF 176
           E V                                                    ++ R 
Sbjct: 113 ETV---------------------------------------------------TEASRN 172

Query: 177 RESSAISIGTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRGNGNAFWKTKLCTKWEVTG 236
           RES A+S+G        GN                 + +L+      WKT++C KW+ TG
Sbjct: 173 RESFAVSLGP------RGN----------------VAQTLKSPN---WKTRICNKWQTTG 232

Query: 237 HCPFGDKCHFAHGQSELQ------------------LSLGREGEVSNPALNINPVVVAME 296
           +CPFG  CHFAHG SEL                   L   + G+V      ++P V    
Sbjct: 233 YCPFGSHCHFAHGPSELHTFGGGLVEGECKIGTSATLDTKQRGQVDTVTSLVSPGV---- 251

Query: 297 ASPSLAASVATSPLPEGQAKPCLLKWKGPKKINRIYADWLDDL 318
              S   S A +  P G       KWKGP KI+R+Y DW+DD+
Sbjct: 293 --SSQRTSSAVTQKPNGVRTQ--RKWKGPDKISRVYGDWIDDI 251

[Close]

BLAST of CmoCh12G012510 vs. ExPASy Swiss-Prot
Match: Q7XPK1 (Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0665700 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-10
Identity = 37/114 (32.46%), Postives = 56/114 (49.12%), Query Frame = 0


Query: 136 KMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGTTVTPLMNGNDSSY 195
           K+K C KF++   CP+G+ C+F H  P  ++                 V   +N  + + 
Sbjct: 39  KLKPCTKFFSTIGCPFGEGCHFSHFVPGGYQ----------------AVAKTLNLGNPAV 98

Query: 196 SEPSRAVSCSASASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDKCHFAHGQSEL 250
             P+RA    A+  +S   +     KT++CTK+     C FGDKCHFAHG+ EL
Sbjct: 99  PAPARAPMDHAAGGNSHPASSG---KTRMCTKYNTAEGCKFGDKCHFAHGEREL 133

[Close]

BLAST of CmoCh12G012510 vs. ExPASy TrEMBL
Match: A0A6J1FBA3 (zinc finger CCCH domain-containing protein 39-like OS=Cucurbita moschata OX=3662 GN=LOC111443870 PE=4 SV=1)

HSP 1 Score: 694.9 bits (1792), Expect = 1.6e-196
Identity = 329/329 (100.00%), Postives = 329/329 (100.00%), Query Frame = 0


Query: 1   MSFNDIRGSVIPPPLHPYGASDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENLS 60
           MSFNDIRGSVIPPPLHPYGASDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENLS
Sbjct: 1   MSFNDIRGSVIPPPLHPYGASDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENLS 60

Query: 61  RVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRED 120
           RVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRED
Sbjct: 61  RVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRED 120

Query: 121 DQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISI 180
           DQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISI
Sbjct: 121 DQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISI 180

Query: 181 GTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDKC 240
           GTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDKC
Sbjct: 181 GTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDKC 240

Query: 241 HFAHGQSELQLSLGREGEVSNPALNINPVVVAMEASPSLAASVATSPLPEGQAKPCLLKW 300
           HFAHGQSELQLSLGREGEVSNPALNINPVVVAMEASPSLAASVATSPLPEGQAKPCLLKW
Sbjct: 241 HFAHGQSELQLSLGREGEVSNPALNINPVVVAMEASPSLAASVATSPLPEGQAKPCLLKW 300

Query: 301 KGPKKINRIYADWLDDLPLSPTSASKLEV 330
           KGPKKINRIYADWLDDLPLSPTSASKLEV
Sbjct: 301 KGPKKINRIYADWLDDLPLSPTSASKLEV 329

[Close]

BLAST of CmoCh12G012510 vs. ExPASy TrEMBL
Match: A0A6J1HLD8 (zinc finger CCCH domain-containing protein 39-like OS=Cucurbita maxima OX=3661 GN=LOC111465601 PE=4 SV=1)

HSP 1 Score: 672.5 bits (1734), Expect = 8.7e-190
Identity = 320/330 (96.97%), Postives = 325/330 (98.48%), Query Frame = 0


Query: 1   MSFNDIRGSVIPPPLHPYGAS-DATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENL 60
           M+FNDIRGSVIPPPLHPYGA+ DATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEEN 
Sbjct: 1   MNFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENQ 60

Query: 61  SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE 120
           SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE
Sbjct: 61  SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE 120

Query: 121 DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS 180
           DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS
Sbjct: 121 DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS 180

Query: 181 IGTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDK 240
           IGTTVTPLMNGNDSSYSEPSRAVSC   ASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDK
Sbjct: 181 IGTTVTPLMNGNDSSYSEPSRAVSC--PASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDK 240

Query: 241 CHFAHGQSELQLSLGREGEVSNPALNINPVVVAMEASPSLAASVATSPLPEGQAKPCLLK 300
           CHFAHGQSELQLSLGREG+VSNPALNINP+VVAMEASPSLAASVATSPLPEGQAKPCLLK
Sbjct: 241 CHFAHGQSELQLSLGREGQVSNPALNINPLVVAMEASPSLAASVATSPLPEGQAKPCLLK 300

Query: 301 WKGPKKINRIYADWLDDLPLSPTSASKLEV 330
           WKGPKKINRIYADWLDDLPLSPTSASKL+V
Sbjct: 301 WKGPKKINRIYADWLDDLPLSPTSASKLDV 328

[Close]

BLAST of CmoCh12G012510 vs. ExPASy TrEMBL
Match: A0A6J1G2M8 (zinc finger CCCH domain-containing protein 39-like OS=Cucurbita moschata OX=3662 GN=LOC111450240 PE=4 SV=1)

HSP 1 Score: 576.2 bits (1484), Expect = 8.5e-161
Identity = 282/346 (81.50%), Postives = 301/346 (86.99%), Query Frame = 0


Query: 1   MSFNDIRGSVIPPPLHPYGAS-DATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENL 60
           MSFND+RGSVIPPPLH YGA+ DA+GCWSQYPRNDLFD QSQFE Q PPFKRARN EEN 
Sbjct: 1   MSFNDMRGSVIPPPLHSYGANGDASGCWSQYPRNDLFDPQSQFEVQQPPFKRARNFEENQ 60

Query: 61  ------------SRVQ--NGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMR 120
                       SRVQ  N P+NKGINNIFFKTRMCAKFKLGLCRNGA+CNFAHG EDMR
Sbjct: 61  SSPMPYPNPPSNSRVQPPNAPMNKGINNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRGNGN---AFWKT 240
           RDDSGRFRESSAISIGTT TPL+NG+DSSY EP +A   S+S  D+LR NGN   +FWKT
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLINGSDSSYPEPIKA--ASSSVPDALRANGNSRPSFWKT 240

Query: 241 KLCTKWEVTGHCPFGDKCHFAHGQSELQLSLGREGEVSNPALNINPVVVAMEASPSLAAS 300
           KLCTKWE+TGHCPFG+KCHFAHGQSELQLS+GREGEVSN ALN+ P+VVAMEA  SLA S
Sbjct: 241 KLCTKWEITGHCPFGEKCHFAHGQSELQLSIGREGEVSNTALNVKPLVVAMEAPSSLATS 300

Query: 301 VATSPLPEGQAKPCLLKWKGPKKINRIYADWLDDLPLSPTSASKLE 329
           V +S LPEGQAK  LLKWKGPKKINRIYADWLDDLPLSP+S S+LE
Sbjct: 301 VPSSALPEGQAKQSLLKWKGPKKINRIYADWLDDLPLSPSSTSQLE 344

[Close]

BLAST of CmoCh12G012510 vs. ExPASy TrEMBL
Match: A0A5A7V7E5 (Zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00080 PE=4 SV=1)

HSP 1 Score: 567.8 bits (1462), Expect = 3.0e-158
Identity = 278/348 (79.89%), Postives = 299/348 (85.92%), Query Frame = 0


Query: 1   MSFNDIRGSVIPPPLHPYGAS-DATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENL 60
           MSFND+RGSVIPPPLH YG++ DA+GCWSQ+PRND FD QSQFE Q PP+KRARNSEEN 
Sbjct: 1   MSFNDMRGSVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60

Query: 61  S--------------RVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMR 120
           S                 N PVNKGI+NIFFKTRMCAKFKLGLCRNGA+CNFAHG EDMR
Sbjct: 61  SSPISYSNPSLNSRGHPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGI+EDDQSV+NWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTVTPLMNGND-SSYSEPSRAVSCSASASDSLRGNGN---AFWK 240
           RDDSGRFRESSAISIGTT TPLMNG+D SSY EPSRA SC  S SD+LR NGN   +FWK
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLMNGSDSSSYIEPSRATSC--SVSDALRANGNVRPSFWK 240

Query: 241 TKLCTKWEVTGHCPFGDKCHFAHGQSELQLSLGREGEVSNPALNINPVVVAMEASPSLAA 300
           TKLCTKWE+TGHCPFGDKCHFAHGQSELQL +GREGEVS  ALN+ P++VAMEAS SL  
Sbjct: 241 TKLCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTT 300

Query: 301 SV-ATSPLPEGQAKPCLLKWKGPKKINRIYADWLDDLPLSPTSASKLE 329
           SV  +S LPEGQAKP LLKWKGPKKINRIYADWLDDLPLSP+S SK+E
Sbjct: 301 SVLPSSALPEGQAKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKME 346

[Close]

BLAST of CmoCh12G012510 vs. ExPASy TrEMBL
Match: A0A1S3C7N3 (zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LOC103497405 PE=4 SV=1)

HSP 1 Score: 567.8 bits (1462), Expect = 3.0e-158
Identity = 278/348 (79.89%), Postives = 299/348 (85.92%), Query Frame = 0


Query: 1   MSFNDIRGSVIPPPLHPYGAS-DATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENL 60
           MSFND+RGSVIPPPLH YG++ DA+GCWSQ+PRND FD QSQFE Q PP+KRARNSEEN 
Sbjct: 1   MSFNDMRGSVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60

Query: 61  S--------------RVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMR 120
           S                 N PVNKGI+NIFFKTRMCAKFKLGLCRNGA+CNFAHG EDMR
Sbjct: 61  SSPISYSNPSLNSRGHPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGI+EDDQSV+NWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTVTPLMNGND-SSYSEPSRAVSCSASASDSLRGNGN---AFWK 240
           RDDSGRFRESSAISIGTT TPLMNG+D SSY EPSRA SC  S SD+LR NGN   +FWK
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLMNGSDSSSYIEPSRATSC--SVSDALRANGNVRPSFWK 240

Query: 241 TKLCTKWEVTGHCPFGDKCHFAHGQSELQLSLGREGEVSNPALNINPVVVAMEASPSLAA 300
           TKLCTKWE+TGHCPFGDKCHFAHGQSELQL +GREGEVS  ALN+ P++VAMEAS SL  
Sbjct: 241 TKLCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTT 300

Query: 301 SV-ATSPLPEGQAKPCLLKWKGPKKINRIYADWLDDLPLSPTSASKLE 329
           SV  +S LPEGQAKP LLKWKGPKKINRIYADWLDDLPLSP+S SK+E
Sbjct: 301 SVLPSSALPEGQAKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKME 346

[Close]

BLAST of CmoCh12G012510 vs. TAIR 10
Match: AT3G19360.1 (Zinc finger (CCCH-type) family protein )

HSP 1 Score: 289.3 bits (739), Expect = 4.0e-78
Identity = 165/345 (47.83%), Postives = 203/345 (58.84%), Query Frame = 0


Query: 33  NDLFDTQSQFEPQ---LPPFKRARNSEENLSRVQNG------------------PVNKGI 92
           + L ++QSQ +P     P  KR R  ++NL    +                   PVNKG 
Sbjct: 41  HSLSESQSQSQPSQQLQPALKRPRLVDDNLFNPASSFPQPSSSNPWMVPSLNPPPVNKGT 100

Query: 93  NNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVG------------IRE 152
            NIF+KTRMCAKF+ G CRNG  CNFAHG ED+RQPP NWQEIVG             RE
Sbjct: 101 ANIFYKTRMCAKFRAGTCRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERERERE 160

Query: 153 DDQS--------VSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGR 212
            ++          +NW DDQKII +MKLCRKF  GEECPYGDRCNF+HED +KFR+DSG+
Sbjct: 161 RERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGK 220

Query: 213 FRESSAISIGTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRG-NGNAFWKTKLCTKWEV 272
            RESS IS+G T     +   S+  E +R  S    A  +  G     +WKT+LC K+++
Sbjct: 221 LRESSVISVGATAADQPSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDI 280

Query: 273 TGHCPFGDKCHFAHGQSELQLSLGR-EGEVSNPALNIN--PVVVAMEA---SPSLAASVA 329
           TG CPFGDKCHFAHGQ+EL  S+GR EGE  N   ++N   VV A EA    P    +  
Sbjct: 281 TGQCPFGDKCHFAHGQAELHNSVGRVEGEAMNAVASVNKQAVVPANEAFAMKPITQVTAD 340

[Close]

BLAST of CmoCh12G012510 vs. TAIR 10
Match: AT1G32360.1 (Zinc finger (CCCH-type) family protein )

HSP 1 Score: 176.8 bits (447), Expect = 2.9e-44
Identity = 116/360 (32.22%), Postives = 162/360 (45.00%), Query Frame = 0


Query: 22  DATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENLSRVQNGPVN---KGINNIFFKT 81
           D    W+  P N   D         PP K+ R S  + S       +   K I  +FFKT
Sbjct: 41  DYNRAWAMNPDNTSGDNNG------PPNKKTRGSPSSSSATTTSAASNRTKAIGKMFFKT 100

Query: 82  RMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIREDDQSVSNWNDDQKIIQ--- 141
           ++C KF+ G C    NCNFAH  E++R+PPPNWQEIV   E+++S         +++   
Sbjct: 101 KLCCKFRAGTCPYITNCNFAHTVEELRRPPPNWQEIVAAHEEERSGGMGTPTVSVVEIPR 160

Query: 142 -------------------KMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESS 201
                              K + C+KFY  E CPYG+ C FLH       D++ R RES 
Sbjct: 161 EEFQIPSLVSSTAESGRSFKGRHCKKFYTEEGCPYGESCTFLH-------DEASRNRESV 220

Query: 202 AISIGTTVTPLMNGNDSSYSEPSRAVSCSASASDSL-------RGNGNAF-------WKT 261
           AIS+G    P   G+         +V    S+S+ +        G+G+         WKT
Sbjct: 221 AISLG----PGGYGSGGGGGSGGGSVGGGGSSSNVVVLGGGGGSGSGSGIQILKPSNWKT 280

Query: 262 KLCTKWEVTGHCPFGDKCHFAHGQSELQL-------SLGREGEVSNPALN---------- 318
           ++C KWE+TG+CPFG KCHFAHG +EL           G++G   NP             
Sbjct: 281 RICNKWEITGYCPFGAKCHFAHGAAELHRFGGGLVEEEGKDGVSPNPDTKQTVQNPKGLS 340

[Close]

BLAST of CmoCh12G012510 vs. TAIR 10
Match: AT2G35430.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 109.4 bits (272), Expect = 5.6e-24
Identity = 81/283 (28.62%), Postives = 113/283 (39.93%), Query Frame = 0


Query: 57  ENLSRVQNGPVNKGINNIFFKTRMCAKFKLGLC-RNGANCNFAHGAEDMR---QPPPNWQ 116
           E+ S+      +  I   FFKT++C KF+ G C  + ++C+FAH AE++R    PPPNWQ
Sbjct: 53  ESPSKKTRSSSSSEIGKSFFKTKLCFKFRAGTCPYSASSCHFAHSAEELRLPPPPPPNWQ 112

Query: 117 EIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRF 176
           E V                                                    ++ R 
Sbjct: 113 ETV---------------------------------------------------TEASRN 172

Query: 177 RESSAISIGTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRGNGNAFWKTKLCTKWEVTG 236
           RES A+S+G        GN                 + +L+      WKT++C KW+ TG
Sbjct: 173 RESFAVSLGP------RGN----------------VAQTLKSPN---WKTRICNKWQTTG 232

Query: 237 HCPFGDKCHFAHGQSELQ------------------LSLGREGEVSNPALNINPVVVAME 296
           +CPFG  CHFAHG SEL                   L   + G+V      ++P V    
Sbjct: 233 YCPFGSHCHFAHGPSELHTFGGGLVEGECKIGTSATLDTKQRGQVDTVTSLVSPGV---- 251

Query: 297 ASPSLAASVATSPLPEGQAKPCLLKWKGPKKINRIYADWLDDL 318
              S   S A +  P G       KWKGP KI+R+Y DW+DD+
Sbjct: 293 --SSQRTSSAVTQKPNGVRTQ--RKWKGPDKISRVYGDWIDDI 251

[Close]

BLAST of CmoCh12G012510 vs. TAIR 10
Match: AT1G68200.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 47.4 bits (111), Expect = 2.6e-05
Identity = 30/107 (28.04%), Postives = 48/107 (44.86%), Query Frame = 0


Query: 77  KTRMCAKF-KLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIREDDQSVSNWNDDQKIIQ 136
           KT +C K+ + G C  G +C FAHG +++R           IR                 
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELRPV---------IRHPR-------------Y 283

Query: 137 KMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGT 183
           K ++CR    G+ CPYG RC+F H    + +  +  F+  S++ + T
Sbjct: 284 KTEVCRMVLAGDNCPYGHRCHFRHSLSEQEKLVAAGFKPKSSLKLIT 308

[Close]

BLAST of CmoCh12G012510 vs. TAIR 10
Match: AT1G68200.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 47.4 bits (111), Expect = 2.6e-05
Identity = 30/107 (28.04%), Postives = 48/107 (44.86%), Query Frame = 0


Query: 77  KTRMCAKF-KLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIREDDQSVSNWNDDQKIIQ 136
           KT +C K+ + G C  G +C FAHG +++R           IR                 
Sbjct: 223 KTELCNKWQETGTCPYGDHCQFAHGIKELRPV---------IRHPR-------------Y 282

Query: 137 KMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGT 183
           K ++CR    G+ CPYG RC+F H    + +  +  F+  S++ + T
Sbjct: 283 KTEVCRMVLAGDNCPYGHRCHFRHSLSEQEKLVAAGFKPKSSLKLIT 307

The following BLAST results are available for this feature:

BLAST of CmoCh12G012510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LT81	5.6e-77	47.83	Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q84UQ3	4.3e-45	33.96	Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica OX...	[more]
Q9LQM3	4.0e-43	32.22	Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q5PP65	7.9e-23	28.62	Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q7XPK1	1.6e-10	32.46	Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of CmoCh12G012510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FBA3	1.6e-196	100.00	zinc finger CCCH domain-containing protein 39-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1HLD8	8.7e-190	96.97	zinc finger CCCH domain-containing protein 39-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1G2M8	8.5e-161	81.50	zinc finger CCCH domain-containing protein 39-like OS=Cucurbita moschata OX=3662...	[more]
A0A5A7V7E5	3.0e-158	79.89	Zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo var. makuwa O...	[more]
A0A1S3C7N3	3.0e-158	79.89	zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of CmoCh12G012510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19360.1	4.0e-78	47.83	Zinc finger (CCCH-type) family protein	[more]
AT1G32360.1	2.9e-44	32.22	Zinc finger (CCCH-type) family protein	[more]
AT2G35430.1	5.6e-24	28.62	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G68200.1	2.6e-05	28.04	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G68200.2	2.6e-05	28.04	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 219..246 e-value: 1.7E-7 score: 40.9 coord: 134..161 e-value: 4.1E-5 score: 33.0 coord: 75..101 e-value: 0.0031 score: 26.7
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 220..246 e-value: 7.7E-11 score: 41.6 coord: 76..100 e-value: 7.8E-5 score: 22.5 coord: 135..159 e-value: 1.3E-7 score: 31.3
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 75..102 score: 13.929295
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 134..162 score: 15.403383
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 219..247 score: 16.088787
None	No IPR available	GENE3D	4.10.1000.10		coord: 215..251 e-value: 2.9E-15 score: 57.4 coord: 134..163 e-value: 2.5E-7 score: 31.9 coord: 69..106 e-value: 2.8E-10 score: 41.4
None	No IPR available	PANTHER	PTHR12547:SF121	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39	coord: 1..318
None	No IPR available	PANTHER	PTHR12547	CCCH ZINC FINGER/TIS11-RELATED	coord: 1..318
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 218..250
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 73..106
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 134..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G012510.1	CmoCh12G012510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding