CmoCh12G012370 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G012370
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Cobyrinic acid A,C-diamide synthase
Location	Cmo_Chr12: 11011126 .. 11014040 (+)
RNA-Seq Expression	CmoCh12G012370
Synteny	CmoCh12G012370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCTTAAAAACCGCAAATTTGATTTGTCTTCGAAGAAAAGAAGCGAATTCAGGATCATGGGCTGCAATCTCTTGTCTTCTTCTCGATTTTTCTCTTGCCCGAGTGAGTTTCGTAATTTCTCAGCCCAGATTTATTGTTAAATTCATGCTTTGTTCTTCAGTGTTTTTTTAAGGGAGATGGGTTTTCCTTGTGCCTTTACAAATTCTGACATTTGGTTCTTTAGTCTAAATTTCAAATTTGCAGTAATGGGATTGATTTTTGTGCTAAAAGTTGGTGCATTAATTGTGTGTTTGATCAGTTAACGAAGTGGATGGTTCTCTAAGGAATTTGAGAAGCTCATTTTATGGTGCCGATAAAGTGTTTGACAAAAGTCCTCTGAGAAGAAACAGAAAAGGCAATGGTGGTAGCTTGTCTGTGGTGGCCTCAGTGGTTTTCTTCCTCACCCTTCTTCATTTACTTTCAATGTCTATTGTGGCCTTTTCTCTAAGAAGGAAAAAGAAAGCTAACTTTTGGGTTTCACAGCTTGGAAGGAGGGTCAAGGGCAGCCGAGAGACTGTAATACCTGATCCAGATTACAGAATTCCGATAGTCTTACTTGGTGGGTACTAAGAATTCTTTGCCTGTAAGTCTTGGCTTACACTTTTTTCGAAGTTCAGACGTTTAAAGAGCAAAACCATTATTGAAAATTGATGGTGTTTCTGGTTATTCCTCATATGTCATGCCAAATCGGCCACCTTAGCAAGTAAAAATACATATAGTTTCAAAATCACTACTCAAATATGTTTGGACAACAATATATTTTCAAACTTAAGCTCACATGATTTACTATGGGATTCTACCAAAAACAATTTATATCAACGAGGATTTGTCCTTTTTCTACTAAGATTTGATGTAGAACTATGTTTGCATCTCTAACAAACTAACGTTTGAACCTACATTTTATAGTTCACTGTTATTTTTCTGAGCAATTTCTCCTTCCCCTTAATCTTAAGCACATCATAATTGTAACAGGTGCTGCTGGTGGGTTAGCTTATAGTGAAAATTTGATAGCAGCTGTCCCTGTTGGACTTCTTGGGCTACTGCTACTGGTTCAGGTAATAATAAAAAACAATAGATCTTCATGAAAGAAACTTTCATTGACAGGGTTTTAAGATGTATTGTGAGATCCCACATTGGCTGGAGAGGAGAACGAAACATTCCTTATGAGGGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAACCATGAGGCTGACAACGATATGTAACGAGTCAAAGCAGACAATATCTGCTAGCGGTGGACTCGGGCTGTTACAAATGGTATCAAAGCCAGACATCGAGCGTTGTGCCAGTGAGGGCGCTGACCCCAAGGAGGGGTGGATTGTGAAATCCCACATCGGTTGGAGAGAAGAACGAAACATTCCTTATGTGGGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAACCATGAGGCTGACAACGATACGTAACGAGCCAAAACAATATCTGCTAGCAGTGGGCTTGAGCTGTTACATGTATCGAGATGCCCTCAAATTTTACCCTCAGAAGAATATTTGCTGCAAAGTTTTTCTGGACGATGCAAGTTTCTTTATAAGCTATTGAAGATGCGTGTATGTTCTTCGAAGTACCAGTTGATGGTTTTTTCTTCGTTCTTCCAGGCTACTCGTGTAAGATTTGTCTTTGGCAATGACGCATTGGTATGTCCACTTAATTTTGCGAAATATTTCTTTATTGTTGTATCAACTATGGGATCTGGAAACATATATCTTCGCTTTGCATTTGGTCACGGATTTTAAATTTTGTTTATGATCCTCTTGAGATCAGCCCTGTGTTCTATGATTTTAGGAGGTAAAAATTGGAGATCAGCTTGAGGAGTCAGGTGAAAATGCGTTTGTGGGCGGAAAGAACCGTTGGAAGTAGGTGATTTTACACACCCGAATGAATCATGCATGTAAGATGAATTGAATCCATGCTATTTTATTGCAGATATTCAACTTTTGTGAATTGGGAATTATGGTGGCCAAGTTTCCCCATTCTGGTGTACTTTAAAGAGACTCAAACAAAGCCAGAAGGCCAAGTGCACTTCTTCCCAGTGATATTTGTAAGTTCTAAGTTCTACTGGATGCATGGTTTTGTTGAGGATTATTGGGAGTGAGTCCCACCTTGATTAATTTAGTGGAAGATCATGGGTTTACAAGTGGAGAATACTATCTCCATTGGTACGAGGCCTTTTGGGAAAGCCCAAAGCAAAGCCACGAGAGGTTATGCTCAAAGTGGACACTATCGTTCCATTGTGGAGAGTCGTAATTCTTAATAGGGTTTTGTTATCTTCTAATGGGAAGTTTTGTTAACTACAATTTTTCTTTAATGATCAGAATGGGAAGCAACTGTATGATGTCATGGTTGAAAGAGCTGGTCCTTCAAAAACTAGCGGACCAAAAGAATCATAAACAACACCCTTTTTCCATCAAACATGATCAGGTAATACTAACCTGACATTTGTAAAGTTTATATGATGAAATGAGAACTTTGATACTCCAATCCTTTTGATTAGTCCGAACAGAATAGACACTTACAAATTTACCTCTACCGAAATTTTCTTAGTTTACTCTTTTTTATTGTCAGGCACATCAGCATCATTTAAGTAAATTTTATCGTGTAAATGAAGTACGTACTACAGGAGTACTAGAAACTTCGATCCAGTATAGCTCAAGTTCTTGACATGAACCATTTGTATATAAATATACTCACAAGATCTCTCTTATTTTTGGATCCCTTTAGGGAATGGATGATTGGTGTACCTCTTATTAATTATAATCTACATTAAATGAATGGTTGAATTCAGTCAGATCCACAAAGGAATTGTTCTGCTCAACAAAATACAGTCAC

mRNA sequence

CCTCTTAAAAACCGCAAATTTGATTTGTCTTCGAAGAAAAGAAGCGAATTCAGGATCATGGGCTGCAATCTCTTGTCTTCTTCTCGATTTTTCTCTTGCCCGATTAACGAAGTGGATGGTTCTCTAAGGAATTTGAGAAGCTCATTTTATGGTGCCGATAAAGTGTTTGACAAAAGTCCTCTGAGAAGAAACAGAAAAGGCAATGGTGGTAGCTTGTCTGTGGTGGCCTCAGTGCTTGGAAGGAGGGTCAAGGGCAGCCGAGAGACTGTAATACCTGATCCAGATTACAGAATTCCGATAGTCTTACTTGGTGCTGCTGGTGGGTTAGCTTATAGTGAAAATTTGATAGCAGCTGTCCCTGTTGGACTTCTTGGGCTACTGCTACTGGTTCAGGCTACTCGTGTAAGATTTGTCTTTGGCAATGACGCATTGGAGGTAAAAATTGGAGATCAGCTTGAGGAGTCAGGTGAAAATGCGTTTGTGGGCGGAAAGAACCGTTGGAAATATTCAACTTTTGTGAATTGGGAATTATGGTGGCCAAGTTTCCCCATTCTGGTGTACTTTAAAGAGACTCAAACAAAGCCAGAAGGCCAAGTGCACTTCTTCCCAGTGATATTTGTAAGTTCTAAGTTCTACTGGATGCATGGTTTTGTTGAGGATTATTGGGAAATGGGAAGCAACTGTATGATGTCATGGTTGAAAGAGCTGGTCCTTCAAAAACTAGCGGACCAAAAGAATCATAAACAACACCCTTTTTCCATCAAACATGATCAGGCACATCAGCATCATTTAAGTAAATTTTATCGTGTAAATGAAGTACGTACTACAGGAGTACTAGAAACTTCGATCCAGTATAGCTCAAGTTCTTGACATGAACCATTTGTATATAAATATACTCACAAGATCTCTCTTATTTTTGGATCCCTTTAGGGAATGGATGATTGGTGTACCTCTTATTAATTATAATCTACATTAAATGAATGGTTGAATTCAGTCAGATCCACAAAGGAATTGTTCTGCTCAACAAAATACAGTCAC

Coding sequence (CDS)

ATGGGCTGCAATCTCTTGTCTTCTTCTCGATTTTTCTCTTGCCCGATTAACGAAGTGGATGGTTCTCTAAGGAATTTGAGAAGCTCATTTTATGGTGCCGATAAAGTGTTTGACAAAAGTCCTCTGAGAAGAAACAGAAAAGGCAATGGTGGTAGCTTGTCTGTGGTGGCCTCAGTGCTTGGAAGGAGGGTCAAGGGCAGCCGAGAGACTGTAATACCTGATCCAGATTACAGAATTCCGATAGTCTTACTTGGTGCTGCTGGTGGGTTAGCTTATAGTGAAAATTTGATAGCAGCTGTCCCTGTTGGACTTCTTGGGCTACTGCTACTGGTTCAGGCTACTCGTGTAAGATTTGTCTTTGGCAATGACGCATTGGAGGTAAAAATTGGAGATCAGCTTGAGGAGTCAGGTGAAAATGCGTTTGTGGGCGGAAAGAACCGTTGGAAATATTCAACTTTTGTGAATTGGGAATTATGGTGGCCAAGTTTCCCCATTCTGGTGTACTTTAAAGAGACTCAAACAAAGCCAGAAGGCCAAGTGCACTTCTTCCCAGTGATATTTGTAAGTTCTAAGTTCTACTGGATGCATGGTTTTGTTGAGGATTATTGGGAAATGGGAAGCAACTGTATGATGTCATGGTTGAAAGAGCTGGTCCTTCAAAAACTAGCGGACCAAAAGAATCATAAACAACACCCTTTTTCCATCAAACATGATCAGGCACATCAGCATCATTTAAGTAAATTTTATCGTGTAAATGAAGTACGTACTACAGGAGTACTAGAAACTTCGATCCAGTATAGCTCAAGTTCTTGA

Protein sequence

MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRNRKGNGGSLSVVASVLGRRVKGSRETVIPDPDYRIPIVLLGAAGGLAYSENLIAAVPVGLLGLLLLVQATRVRFVFGNDALEVKIGDQLEESGENAFVGGKNRWKYSTFVNWELWWPSFPILVYFKETQTKPEGQVHFFPVIFVSSKFYWMHGFVEDYWEMGSNCMMSWLKELVLQKLADQKNHKQHPFSIKHDQAHQHHLSKFYRVNEVRTTGVLETSIQYSSSS

Homology

[Close]

BLAST of CmoCh12G012370 vs. ExPASy TrEMBL
Match: A0A6J1FDH2 (uncharacterized protein LOC111444372 OS=Cucurbita moschata OX=3662 GN=LOC111444372 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 7.3e-102
Identity = 188/193 (97.41%), Postives = 189/193 (97.93%), Query Frame = 0


Query: 1   MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRNRKGNGGSLSVVASVL 60
           MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRNRKGNGGSLSVVASVL
Sbjct: 15  MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRNRKGNGGSLSVVASVL 74

Query: 61  GRRVKGSRETVIPDPDYRIPIVLLGAAGGLAYSENLIAAVPVGLLGLLLLVQATRVRFVF 120
           GRRVKGSRETVIPDPDYRIPIVLLGAAGGLAYSENLIAAVPVGLLGLLLLVQATRVRFVF
Sbjct: 75  GRRVKGSRETVIPDPDYRIPIVLLGAAGGLAYSENLIAAVPVGLLGLLLLVQATRVRFVF 134

Query: 121 GNDALEVKIGDQLEESGENAFVGGKNRWKYSTFVNWELWWPSFPILVYFKETQTKPEGQV 180
           GNDALEVKIGDQLEESGENAFVGGKNRWKYSTFVNWELWWPSFPILVYFKETQTKPEGQV
Sbjct: 135 GNDALEVKIGDQLEESGENAFVGGKNRWKYSTFVNWELWWPSFPILVYFKETQTKPEGQV 194

Query: 181 HFFPVIFVSSKFY 194
           HFFPVIF   + Y
Sbjct: 195 HFFPVIFNGKQLY 207

[Close]

BLAST of CmoCh12G012370 vs. ExPASy TrEMBL
Match: A0A6J1HLM9 (uncharacterized protein LOC111465663 OS=Cucurbita maxima OX=3661 GN=LOC111465663 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 6.4e-98
Identity = 181/193 (93.78%), Postives = 185/193 (95.85%), Query Frame = 0


Query: 1   MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRNRKGNGGSLSVVASVL 60
           MGCNLLSSSRFFSCPI EVDGSLRNLRS+FYGADKV+ KSPLRRN KGNGGSLSVVASV 
Sbjct: 1   MGCNLLSSSRFFSCPIKEVDGSLRNLRSTFYGADKVYGKSPLRRNIKGNGGSLSVVASVF 60

Query: 61  GRRVKGSRETVIPDPDYRIPIVLLGAAGGLAYSENLIAAVPVGLLGLLLLVQATRVRFVF 120
           GRRVKGSRETVIPDPDYRIPIVLLGAAGGLAY+ENLIAAVPVGLLGLLLLVQATRVRFVF
Sbjct: 61  GRRVKGSRETVIPDPDYRIPIVLLGAAGGLAYNENLIAAVPVGLLGLLLLVQATRVRFVF 120

Query: 121 GNDALEVKIGDQLEESGENAFVGGKNRWKYSTFVNWELWWPSFPILVYFKETQTKPEGQV 180
           GNDALEVKIGDQLEESGENAFVGGKNRWKYSTFVNWELWWPSFPILVYFKETQTKPEGQV
Sbjct: 121 GNDALEVKIGDQLEESGENAFVGGKNRWKYSTFVNWELWWPSFPILVYFKETQTKPEGQV 180

Query: 181 HFFPVIFVSSKFY 194
           HFFPVIF   + Y
Sbjct: 181 HFFPVIFNGKQLY 193

[Close]

BLAST of CmoCh12G012370 vs. ExPASy TrEMBL
Match: A0A6J1CN08 (uncharacterized protein LOC111012982 OS=Momordica charantia OX=3673 GN=LOC111012982 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 2.1e-88
Identity = 163/193 (84.46%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 1   MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRNRKGNGGSLSVVASVL 60
           MGC L S+SRFFSCPI EVDGSLRN RSSFYG D ++DKSPLRRN KG+GG  SVVASV+
Sbjct: 1   MGCTLFSASRFFSCPIKEVDGSLRNSRSSFYGGDILYDKSPLRRNIKGSGGGFSVVASVI 60

Query: 61  GRRVKGSRETVIPDPDYRIPIVLLGAAGGLAYSENLIAAVPVGLLGLLLLVQATRVRFVF 120
           GRRVKG RETVIPDPDYRIP+VLLGAAGGLAY++NL++AVPVGLLGLLLLVQATRVRFVF
Sbjct: 61  GRRVKG-RETVIPDPDYRIPVVLLGAAGGLAYTDNLLSAVPVGLLGLLLLVQATRVRFVF 120

Query: 121 GNDALEVKIGDQLEESGENAFVGGKNRWKYSTFVNWELWWPSFPILVYFKETQTKPEGQV 180
            ++ALEVKIGDQLE+SGENAFVGGKNRWKYSTFVNWELWWP+FPILVYFKETQTKPEGQV
Sbjct: 121 DDEALEVKIGDQLEDSGENAFVGGKNRWKYSTFVNWELWWPNFPILVYFKETQTKPEGQV 180

Query: 181 HFFPVIFVSSKFY 194
           HFFPVIF   + Y
Sbjct: 181 HFFPVIFNGKQLY 192

[Close]

BLAST of CmoCh12G012370 vs. ExPASy TrEMBL
Match: A0A0A0LIY3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006230 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 1.2e-83
Identity = 159/193 (82.38%), Postives = 173/193 (89.64%), Query Frame = 0


Query: 1   MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRNRKGNGGSLSVVASVL 60
           MGC L SS R FS PI EVDGSLRNLRSS++GA  V++KS LRRN K + GS SVVASVL
Sbjct: 1   MGCTLFSSPRVFSSPIKEVDGSLRNLRSSYFGAHIVYNKSLLRRNMKCSSGSFSVVASVL 60

Query: 61  GRRVKGSRETVIPDPDYRIPIVLLGAAGGLAYSENLIAAVPVGLLGLLLLVQATRVRFVF 120
           G+RVKG RETVIPDPDYRIPIVLLGA GGLAY++NL+AAVP+GLLGLLLLVQATRV+FVF
Sbjct: 61  GKRVKG-RETVIPDPDYRIPIVLLGATGGLAYTDNLLAAVPIGLLGLLLLVQATRVKFVF 120

Query: 121 GNDALEVKIGDQLEESGENAFVGGKNRWKYSTFVNWELWWPSFPILVYFKETQTKPEGQV 180
            N+ALEVKIGDQLE+SGENAFVGGKNRWKYSTFVNWELWWPSFPILVYFKETQTKPEGQV
Sbjct: 121 DNEALEVKIGDQLEDSGENAFVGGKNRWKYSTFVNWELWWPSFPILVYFKETQTKPEGQV 180

Query: 181 HFFPVIFVSSKFY 194
           HFFPVIF   + Y
Sbjct: 181 HFFPVIFNGKQLY 192

[Close]

BLAST of CmoCh12G012370 vs. ExPASy TrEMBL
Match: A0A1S3C602 (uncharacterized protein LOC103497257 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497257 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 6.4e-82
Identity = 156/193 (80.83%), Postives = 171/193 (88.60%), Query Frame = 0


Query: 1   MGCNLLSSSRFFSCPINEVDGSLRNLRSSFYGADKVFDKSPLRRNRKGNGGSLSVVASVL 60
           MGC L SS RF S PI EVDGSLRNLRSSF+GA  +++KS LRRN K   GS S+VAS+ 
Sbjct: 1   MGCTLFSSPRFLSSPIKEVDGSLRNLRSSFFGAHIMYNKSLLRRNMKCCSGSFSLVASLF 60

Query: 61  GRRVKGSRETVIPDPDYRIPIVLLGAAGGLAYSENLIAAVPVGLLGLLLLVQATRVRFVF 120
           G+RVKG RETVIPDPDYRIPIVLLGAAGGLAY++NL+AAVP+GLLGLLLLVQATRVRFVF
Sbjct: 61  GKRVKG-RETVIPDPDYRIPIVLLGAAGGLAYTDNLLAAVPIGLLGLLLLVQATRVRFVF 120

Query: 121 GNDALEVKIGDQLEESGENAFVGGKNRWKYSTFVNWELWWPSFPILVYFKETQTKPEGQV 180
            N+ALEVKIGD+L +SGENAFVGGKNRWKYSTFVNWELWWPSFPILVYFKETQTKPEGQV
Sbjct: 121 NNEALEVKIGDELVDSGENAFVGGKNRWKYSTFVNWELWWPSFPILVYFKETQTKPEGQV 180

Query: 181 HFFPVIFVSSKFY 194
           HFFPVIF   + Y
Sbjct: 181 HFFPVIFNGKQLY 192

The following BLAST results are available for this feature:

BLAST of CmoCh12G012370 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh12G012370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FDH2	7.3e-102	97.41	uncharacterized protein LOC111444372 OS=Cucurbita moschata OX=3662 GN=LOC1114443...	[more]
A0A6J1HLM9	6.4e-98	93.78	uncharacterized protein LOC111465663 OS=Cucurbita maxima OX=3661 GN=LOC111465663...	[more]
A0A6J1CN08	2.1e-88	84.46	uncharacterized protein LOC111012982 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A0A0LIY3	1.2e-83	82.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006230 PE=4 SV=1	[more]
A0A1S3C602	6.4e-82	80.83	uncharacterized protein LOC103497257 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of CmoCh12G012370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021467	Protein of unknown function DUF3119	PFAM	PF11317	DUF3119	coord: 72..190 e-value: 4.4E-42 score: 143.3
IPR021467	Protein of unknown function DUF3119	PANTHER	PTHR35550	FAMILY NOT NAMED	coord: 4..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G012370.1	CmoCh12G012370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane