CmoCh12G012300 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G012300
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	methyl-CpG-binding domain-containing protein 11-like isoform X1
Location	Cmo_Chr12: 10968524 .. 10970710 (-)
RNA-Seq Expression	CmoCh12G012300
Synteny	CmoCh12G012300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGTCATTACTAAATTTGTCGCTGTAAATCCATTTCTCTCCTCTGTTTTAGTTGTGTGCAGCTAAGGAAGAAACCCAGAAACGCCAAATCGCGAATCCAAGTAACCCATTATTTTCTCTACCTTTTTCGAGAAGTTCTTTGTTCGGGAGCTATTTTTAGTGAATTTTATCATCATTGCTTCTTGTGGTTAGGTCATAAATGGCGGAATCAGTGGAGAAAGACACTTCGAATGAGGAGGTTCTGTCCTTCGAACTCCCTGCCCCTCCTGGCTGGAAGAAAAAGGTGTTCATCTCACTTCGATTCCTTTTCTGGATCTTCAGTTCTTGTTGAATTGCTTATTTTCTTGCTCAATTTTGCTTTTACCGCTCAATTCTCAACTCGGATTTTGTTGTTCCTGGATTTTAGGGTTTCTTTGGTGAGAATTCACTGCTTGTAGTATCTAGGGTTTTTTCTGGAAGGTTGAATTATCGAATTTCTTGCTTAATCTATCTTTTCGCTTGGATTTCCAGTCTTCTTCGACAGAAATCTCTGGAAATTGTTGGTCTCTAGTTTCTATTTGACTTTGCTTTGACATCGCTTTGACGTCGCTATGCTGCTTCGTGATGAGTTCAATTTGTGTTATGATGATTTTTTTTTTTGCTTGAATTACTTGGAGCTGTGGACTAATTTTTGTTCCCTTCTCCTTTCTGGTGTGAGAGATAGTGAGCGATTATGTTATCTGGGGAGGATTAGGGCTGCTAACATTGATAATGATGTTAATAAATAAAAATTATTGAACAGTGCGTGCTCTGCCTGGATTTGCCTTGCTCCAACAAGTGAGGATATACATGTGTGTGTGCATATTTTCTATTCAATCAGTTGACTATATTGTGCACTCAATACCAGCTGCTGAAATTTATTTGCTTGGATTTTTCACAATTTAAATGTGAGATCTCACATTGGTCTTTATAAGAGTGGGGAAACCACTCCTTAGTAGACGCGTTTTAAAATCGTGAGGCTGATAATATCTGCTAGCGGTGGGTTTGGGCTGTTACAAATGATATCAGAACCAGACACCGGGCGATGTGCTAGCTAGGAGAGTAAGTTTCGAAGGGGGTGGACACCAGGCGGTGTGCCGCCAAGGACGCTGGGGATCTCACATCGATTGGAGAACGGAACGAGTGTCAGTGAGGACGTTGGGCCCCGAAGGGGGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAATATTCTTTATAAGAGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAACCTTGAGAGGAAGCCTAAAAGGGAAAGCCCAAAGAGGACAATATCTACTTGCTGTGGGCTTGGGCCGTTGTAGGAACGTCTAAGGATAACGTTTAGATATTGGATATCTATAGTTGTTTTTATATATAAGTTGTGGTTGTGCTATGATCAAACTTGATTCTTGGCTTATAGAGCTTGTCTTTTTTTTTTTTTTTTTTGGGTAAGCTGTAGATGTTTGGCTCTATTATGGAAGGAGGGACATAAAAGGGGCTTATGGATTCAAGACGAAATAGAGGGGAAAATGAGATTTTAGGCATATTTTTGTCTTGAGGAACTGAAACTACTTGGGATTTTATCATTAGATATGGTAAATTTATCGGTGAGGTCTGGAATGGTTGACACGTTGGTTGATTTGATAGGCGTCTAATATACTTCCTTTATTGTAGGAAGGTCCTTAATGAGTTTTGTTAGTTGTACGTATGAATCAATCTGTAACTTCTGTTCTATTCTAGTATGTGTTTAAGACCTGATCCTGTTGCTTTCATGTTGCTTTCAAGTAGTTCAAAACATATATTTGTAGAAGGCGTCGGATTGGTTGTAGAGGGGAACAAAACATTCCTTATAATGGTGTGGAAACGTCTCCCTAGCAGATGTGTTTTAAAATCGTGAGGCTGATGACGATACATAAAGGGTCAAAGTGGACAATATCTCCTAGCGGTGGGTTTGGGCTGTTACAGTGATCATATGAAATTTCCTGTCATTTTGAGTAATATCTAAATCAAAATATATTATCGTTATCAAATAAGTTCGATTGTCCAGCAAAACTCGATACTTATGGAAAGAAGAGGAAGACATAAGCAAGGTGACCGGAGTGAAGTTCAACAGTTGGATGTGGGAGCCCGTCATAGTTGGTCAATGGGATAA

mRNA sequence

CCGTCATTACTAAATTTGTCGCTGTAAATCCATTTCTCTCCTCTGTTTTAGTTGTGTGCAGCTAAGGAAGAAACCCAGAAACGCCAAATCGCGAATCCAAGTCATAAATGGCGGAATCAGTGGAGAAAGACACTTCGAATGAGGAGGTTCTGTCCTTCGAACTCCCTGCCCCTCCTGGCTGGAAGAAAAAGCAAAACTCGATACTTATGGAAAGAAGAGGAAGACATAAGCAAGGTGACCGGAGTGAAGTTCAACAGTTGGATGTGGGAGCCCGTCATAGTTGGTCAATGGGATAA

Coding sequence (CDS)

ATGGCGGAATCAGTGGAGAAAGACACTTCGAATGAGGAGGTTCTGTCCTTCGAACTCCCTGCCCCTCCTGGCTGGAAGAAAAAGCAAAACTCGATACTTATGGAAAGAAGAGGAAGACATAAGCAAGGTGACCGGAGTGAAGTTCAACAGTTGGATGTGGGAGCCCGTCATAGTTGGTCAATGGGATAA

Protein sequence

MAESVEKDTSNEEVLSFELPAPPGWKKKQNSILMERRGRHKQGDRSEVQQLDVGARHSWSMG

Homology

[Close]

BLAST of CmoCh12G012300 vs. ExPASy TrEMBL
Match: A0A6J1FCB1 (methyl-CpG-binding domain-containing protein 11-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444100 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.8e-06
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1  MAESVEKDTSNEEVLSFELPAPPGWKKK 29
          MAESVEKDTSNEEVLSFELPAPPGWKKK
Sbjct: 1  MAESVEKDTSNEEVLSFELPAPPGWKKK 28

[Close]

BLAST of CmoCh12G012300 vs. ExPASy TrEMBL
Match: A0A6J1HLG2 (methyl-CpG-binding domain-containing protein 11-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465620 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.5e-06
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1  MAESVEKDTSNEEVLSFELPAPPGWKKK 29
          MAESVEKDT+NEEVLSFELPAPPGWKKK
Sbjct: 1  MAESVEKDTANEEVLSFELPAPPGWKKK 28

[Close]

BLAST of CmoCh12G012300 vs. ExPASy TrEMBL
Match: A0A6J1CQ83 (methyl-CpG-binding domain-containing protein 11-like OS=Momordica charantia OX=3673 GN=LOC111013157 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.1e-04
Identity = 23/28 (82.14%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 1  MAESVEKDTSNEEVLSFELPAPPGWKKK 29
          MA SV+KD++NEEV+SFELPAPPGWKKK
Sbjct: 1  MAASVQKDSANEEVVSFELPAPPGWKKK 28

The following BLAST results are available for this feature:

BLAST of CmoCh12G012300 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh12G012300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FCB1	3.8e-06	100.00	methyl-CpG-binding domain-containing protein 11-like isoform X1 OS=Cucurbita mos...	[more]
A0A6J1HLG2	8.5e-06	96.43	methyl-CpG-binding domain-containing protein 11-like isoform X1 OS=Cucurbita max...	[more]
A0A6J1CQ83	6.1e-04	82.14	methyl-CpG-binding domain-containing protein 11-like OS=Momordica charantia OX=3...	[more]

BLAST of CmoCh12G012300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G012300.1	CmoCh12G012300.1	mRNA