CmoCh12G012230 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G012230
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	MYB transcription factor
Location	Cmo_Chr12: 10915267 .. 10916265 (-)
RNA-Seq Expression	CmoCh12G012230
Synteny	CmoCh12G012230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAAAGTAAAGCGATGAAGCAACAGGCAAAGAAAAATTTATGGAAACCAGAAGAAGATTTGATCCTCAGAAACTATGTGGAAACTCATGGTGAAGGGAATTGGGCAACTGTCTCCCAGGAATCAGGTAAAAGAAAAATTACCTCAAAACTATCTATTATCGATCTACGCACAGACATTTCTATGTCGGCTCTTATTCATCTTTCACATAACTCTAACACAGACAGTGAGACAAAGATATCCGGTTTTTTTTTTCATTTATGTGGTGCATGTGTGTATGTGTTCCTAACCTGGTCTCTCAGGTTTGATGCGAGGTGGGAAAAGCTGCAGACTAAGATGGAAGAATTACCTCCGTCCCAATATAAAGCGCGGGGGCATGTCCAAAGAGGAAGAGGACCTAATTATCCGTATGCATAAACTTTTAGGCAACAGGTCGGTTTGTATCGAATTAATCTCCGAAGCTTAATCAATACTTAATAGTAAAAAGAGTAAACTGACTGAATGTTTGGATATTTTGATGGTTAAACTTCTTCGATCAGATGGTCACTGATTGCTGGTCGGCTTCCTGGTCGAACTGATAATGAGGTTAAGAACTACTGGAATACCCATTTGAACAAGAATGGCCTGCAAGATAAAAGAAAAGTTAATGAATCAAGCAGCTGCAAGAAAAAGGATGAGGACGACGGGAATAATAAGAAGCAGAAGAAAGTTATCAACCAGACTAGCTATCCTCAACCGCAAATGTGCAGTGACAATTGGGCAAATCAGGCACATGATATACAGAGAAGGAACCAGGAAGAGAACAGAGAAGTTACAGATCTTTGGAATATGGATGACATAACAAGTTCTCATTATAATATAAACTGTCCAATGGTACCTGCAAATAACGCGACTTTTAACTTCGACGATGAGCCTCACTTTAACCACCTTGATCCCTTCTTCCTGATTGAAGCATTTGGATGCAGTAGTGTTGATGCATCACTGGAGAACATGTGA

mRNA sequence

ATGGAGGAAAGTAAAGCGATGAAGCAACAGGCAAAGAAAAATTTATGGAAACCAGAAGAAGATTTGATCCTCAGAAACTATGTGGAAACTCATGGTGAAGGGAATTGGGCAACTGTCTCCCAGGAATCAGGTTTGATGCGAGGTGGGAAAAGCTGCAGACTAAGATGGAAGAATTACCTCCGTCCCAATATAAAGCGCGGGGGCATGTCCAAAGAGGAAGAGGACCTAATTATCCGTATGCATAAACTTTTAGGCAACAGATGGTCACTGATTGCTGGTCGGCTTCCTGGTCGAACTGATAATGAGGTTAAGAACTACTGGAATACCCATTTGAACAAGAATGGCCTGCAAGATAAAAGAAAAGTTAATGAATCAAGCAGCTGCAAGAAAAAGGATGAGGACGACGGGAATAATAAGAAGCAGAAGAAAGTTATCAACCAGACTAGCTATCCTCAACCGCAAATGTGCAGTGACAATTGGGCAAATCAGGCACATGATATACAGAGAAGGAACCAGGAAGAGAACAGAGAAGTTACAGATCTTTGGAATATGGATGACATAACAAGTTCTCATTATAATATAAACTGTCCAATGGTACCTGCAAATAACGCGACTTTTAACTTCGACGATGAGCCTCACTTTAACCACCTTGATCCCTTCTTCCTGATTGAAGCATTTGGATGCAGTAGTGTTGATGCATCACTGGAGAACATGTGA

Coding sequence (CDS)

ATGGAGGAAAGTAAAGCGATGAAGCAACAGGCAAAGAAAAATTTATGGAAACCAGAAGAAGATTTGATCCTCAGAAACTATGTGGAAACTCATGGTGAAGGGAATTGGGCAACTGTCTCCCAGGAATCAGGTTTGATGCGAGGTGGGAAAAGCTGCAGACTAAGATGGAAGAATTACCTCCGTCCCAATATAAAGCGCGGGGGCATGTCCAAAGAGGAAGAGGACCTAATTATCCGTATGCATAAACTTTTAGGCAACAGATGGTCACTGATTGCTGGTCGGCTTCCTGGTCGAACTGATAATGAGGTTAAGAACTACTGGAATACCCATTTGAACAAGAATGGCCTGCAAGATAAAAGAAAAGTTAATGAATCAAGCAGCTGCAAGAAAAAGGATGAGGACGACGGGAATAATAAGAAGCAGAAGAAAGTTATCAACCAGACTAGCTATCCTCAACCGCAAATGTGCAGTGACAATTGGGCAAATCAGGCACATGATATACAGAGAAGGAACCAGGAAGAGAACAGAGAAGTTACAGATCTTTGGAATATGGATGACATAACAAGTTCTCATTATAATATAAACTGTCCAATGGTACCTGCAAATAACGCGACTTTTAACTTCGACGATGAGCCTCACTTTAACCACCTTGATCCCTTCTTCCTGATTGAAGCATTTGGATGCAGTAGTGTTGATGCATCACTGGAGAACATGTGA

Protein sequence

MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYLRPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKRKVNESSSCKKKDEDDGNNKKQKKVINQTSYPQPQMCSDNWANQAHDIQRRNQEENREVTDLWNMDDITSSHYNINCPMVPANNATFNFDDEPHFNHLDPFFLIEAFGCSSVDASLENM

Homology

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BLAST of CmoCh12G012230 vs. ExPASy Swiss-Prot
Match: Q9LTF7 (Transcription factor MYB82 OS=Arabidopsis thaliana OX=3702 GN=MYB82 PE=1 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.2e-49
Identity = 91/118 (77.12%), Postives = 101/118 (85.59%), Query Frame = 0


Query: 8   KQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYLRPNIKRG 67
           K   K+ LWKPEED+IL++YVETHGEGNWA +S+ SGL RGGKSCRLRWKNYLRPNIKRG
Sbjct: 9   KSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKNYLRPNIKRG 68

Query: 68  GMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKRKVNES 126
            MS +E+DLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK     ++   ES
Sbjct: 69  SMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKKPNSRRQNAPES 126

[Close]

BLAST of CmoCh12G012230 vs. ExPASy Swiss-Prot
Match: Q9FJA2 (Transcription factor TT2 OS=Arabidopsis thaliana OX=3702 GN=TT2 PE=1 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.7e-38
Identity = 69/106 (65.09%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 8   KQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYLRPNIKRG 67
           +++  +  W   ED ILR+Y+ THGEG W+T+  ++GL R GKSCRLRWKNYLRP IKRG
Sbjct: 11  REELNRGAWTDHEDKILRDYITTHGEGKWSTLPNQAGLKRCGKSCRLRWKNYLRPGIKRG 70

Query: 68  GMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 114
            +S +EE+LIIR+H LLGNRWSLIAGRLPGRTDNE+KN+WN++L K
Sbjct: 71  NISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRK 116

[Close]

BLAST of CmoCh12G012230 vs. ExPASy Swiss-Prot
Match: Q96276 (Transcription factor MYB23 OS=Arabidopsis thaliana OX=3702 GN=MYB23 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.2e-38
Identity = 73/112 (65.18%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 8   KQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYLRPNIKRG 67
           + + KK LW  EED IL +YV THG+G+W  +++++GL R GKSCRLRW NYL PN+ RG
Sbjct: 9   EHEYKKGLWTVEEDKILMDYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVNRG 68

Query: 68  GMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKN-GLQD 119
             + +EEDLIIR+HKLLGNRWSLIA R+PGRTDN+VKNYWNTHL+K  GL D
Sbjct: 69  NFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGLGD 120

[Close]

BLAST of CmoCh12G012230 vs. ExPASy Swiss-Prot
Match: A0A4D6Q4S0 (Transcription factor MYB1 OS=Crocosmia x crocosmiiflora OX=1053288 GN=MYB2 PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.4e-37
Identity = 79/148 (53.38%), Postives = 102/148 (68.92%), Query Frame = 0


Query: 8   KQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYLRPNIKRG 67
           K+   +  W   ED +L++Y+ THGEG W  + + +GL R GKSCRLRW NYLRP+IKRG
Sbjct: 9   KEGLNRGAWSAREDKVLKDYINTHGEGKWRDLPRRAGLKRCGKSCRLRWLNYLRPDIKRG 68

Query: 68  GMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKRKVNESSS 127
            +S +EE+LIIR+HKLLGNRWSLIAGRLPGRTDNE+KNYWNT+L+K       KVN  + 
Sbjct: 69  NISYDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTYLSK-------KVNSQT- 128

Query: 128 CKKKDEDDGNNKKQKKVINQTSYPQPQM 156
              + E DG+    KK   +    +PQ+
Sbjct: 129 --HQHEIDGDQVPLKKTKEEEVSEKPQV 146

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BLAST of CmoCh12G012230 vs. ExPASy Swiss-Prot
Match: Q9SEI0 (Transcription factor WER OS=Arabidopsis thaliana OX=3702 GN=WER PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.1e-37
Identity = 90/195 (46.15%), Postives = 120/195 (61.54%), Query Frame = 0


Query: 12  KKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYLRPNIKRGGMSK 71
           KK LW  EED IL +YV+ HG+G+W  +++++GL R GKSCRLRW NYL PN+KRG  ++
Sbjct: 17  KKGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVKRGNFTE 76

Query: 72  EEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKN-GLQDKRKVNESSSCKK 131
           +EEDLIIR+HKLLGNRWSLIA R+PGRTDN+VKNYWNTHL+K  G++D          +K
Sbjct: 77  QEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGIKD----------QK 136

Query: 132 KDEDDGNNKKQKKVINQTSYPQPQMCS---DNWANQAHDIQRRNQ-----------EENR 191
             + +G+   Q  + N T   +    S   DN      +IQ  +Q           E+  
Sbjct: 137 TKQSNGDIVYQINLPNPTETSEETKISNIVDNNNILGDEIQEDHQGSNYLSSLWVHEDEF 196

[Close]

BLAST of CmoCh12G012230 vs. ExPASy TrEMBL
Match: A0A6J1FGK0 (transcription factor WER-like OS=Cucurbita moschata OX=3662 GN=LOC111443992 PE=4 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 1.8e-136
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0


Query: 1   MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60
           MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL
Sbjct: 1   MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60

Query: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120
           RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR
Sbjct: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120

Query: 121 KVNESSSCKKKDEDDGNNKKQKKVINQTSYPQPQMCSDNWANQAHDIQRRNQEENREVTD 180
           KVNESSSCKKKDEDDGNNKKQKKVINQTSYPQPQMCSDNWANQAHDIQRRNQEENREVTD
Sbjct: 121 KVNESSSCKKKDEDDGNNKKQKKVINQTSYPQPQMCSDNWANQAHDIQRRNQEENREVTD 180

Query: 181 LWNMDDITSSHYNINCPMVPANNATFNFDDEPHFNHLDPFFLIEAFGCSSVDASLENM 239
           LWNMDDITSSHYNINCPMVPANNATFNFDDEPHFNHLDPFFLIEAFGCSSVDASLENM
Sbjct: 181 LWNMDDITSSHYNINCPMVPANNATFNFDDEPHFNHLDPFFLIEAFGCSSVDASLENM 238

[Close]

BLAST of CmoCh12G012230 vs. ExPASy TrEMBL
Match: A0A6J1HMX7 (transcription factor WER-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465651 PE=4 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 9.5e-130
Identity = 230/238 (96.64%), Postives = 235/238 (98.74%), Query Frame = 0


Query: 1   MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60
           MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL
Sbjct: 1   MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60

Query: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120
           RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR
Sbjct: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120

Query: 121 KVNESSSCKKKDEDDGNNKKQKKVINQTSYPQPQMCSDNWANQAHDIQRRNQEENREVTD 180
           KVNES+SCKK DEDDGNNKKQKKVINQTSYPQPQMCSDN ANQAHDIQRR+QEENREVTD
Sbjct: 121 KVNESNSCKKMDEDDGNNKKQKKVINQTSYPQPQMCSDNGANQAHDIQRRSQEENREVTD 180

Query: 181 LWNMDDITSSHYNINCPMVPANNATFNFDDEPHFNHLDPFFLIEAFGCSSVDASLENM 239
           LWNMDDIT S+YNINCPMVPANNATFNFDDEP++NHLDPFFLIEAFGCSSVDASLENM
Sbjct: 181 LWNMDDIT-SYYNINCPMVPANNATFNFDDEPYYNHLDPFFLIEAFGCSSVDASLENM 237

[Close]

BLAST of CmoCh12G012230 vs. ExPASy TrEMBL
Match: A0A5D3BGT2 (Transcription factor WER-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00730 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 1.3e-115
Identity = 209/241 (86.72%), Postives = 219/241 (90.87%), Query Frame = 0


Query: 1   MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60
           MEESKAMKQQ KKNLWKPEED ILR+YVETHGEGNWATVSQESGLMRG KSCRLRWKNYL
Sbjct: 1   MEESKAMKQQPKKNLWKPEEDFILRSYVETHGEGNWATVSQESGLMRGAKSCRLRWKNYL 60

Query: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120
           RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR
Sbjct: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120

Query: 121 KVNESSSCKKKDE---DDGNNKKQKKVINQTSYPQPQMCSDNWANQAHDIQRRNQEENRE 180
           K N S+SCKK D+   DDGNNKKQKKVINQT YPQP +  DN A+ AHDIQRRNQEENRE
Sbjct: 121 KANNSNSCKKNDDNNSDDGNNKKQKKVINQTCYPQPPLYRDNGADLAHDIQRRNQEENRE 180

Query: 181 VTDLWNMDDITSSHYNINCPMVPANNATFNFDDEPHFNHLDPFFLIEAFGCSSVDASLEN 239
             +  NMDDITSSHYNIN PM+PANN TFNFDDEP+F+HLDPFFL EAFGCSSVDASL+N
Sbjct: 181 KQNPSNMDDITSSHYNINSPMIPANNTTFNFDDEPYFDHLDPFFLFEAFGCSSVDASLDN 240

[Close]

BLAST of CmoCh12G012230 vs. ExPASy TrEMBL
Match: A0A6J1G3P0 (transcription factor MYB82 OS=Cucurbita moschata OX=3662 GN=LOC111450489 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 1.3e-115
Identity = 209/241 (86.72%), Postives = 220/241 (91.29%), Query Frame = 0


Query: 1   MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60
           MEESK MKQQ KKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL
Sbjct: 1   MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60

Query: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120
           RPNIKRG MSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR
Sbjct: 61  RPNIKRGEMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120

Query: 121 KVNESSSCKKKD---EDDGNNKKQKKVINQTSYPQPQMCSDNWANQAHDIQRRNQEENRE 180
           K N+S+S KK D   +DD NNKKQKKVINQT YPQP +C DN  N AHD QRRNQEE RE
Sbjct: 121 KANDSNSHKKNDDDNDDDVNNKKQKKVINQTGYPQPPICIDNGINLAHDTQRRNQEEKRE 180

Query: 181 VTDLWNMDDITSSHYNINCPMVPANNATFNFDDEPHFNHLDPFFLIEAFGCSSVDASLEN 239
           VT+ WNMDDITSSHYNIN P+VPAN+ATFNFDDEP+F+HLDPFFL+EAFGCSSV ASL+N
Sbjct: 181 VTEPWNMDDITSSHYNINSPIVPANDATFNFDDEPYFDHLDPFFLLEAFGCSSVHASLDN 240

[Close]

BLAST of CmoCh12G012230 vs. ExPASy TrEMBL
Match: A0A1S3C427 (transcription factor WER-like OS=Cucumis melo OX=3656 GN=LOC103496778 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 1.3e-115
Identity = 209/241 (86.72%), Postives = 219/241 (90.87%), Query Frame = 0


Query: 1   MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60
           MEESKAMKQQ KKNLWKPEED ILR+YVETHGEGNWATVSQESGLMRG KSCRLRWKNYL
Sbjct: 1   MEESKAMKQQPKKNLWKPEEDFILRSYVETHGEGNWATVSQESGLMRGAKSCRLRWKNYL 60

Query: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120
           RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR
Sbjct: 61  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 120

Query: 121 KVNESSSCKKKDE---DDGNNKKQKKVINQTSYPQPQMCSDNWANQAHDIQRRNQEENRE 180
           K N S+SCKK D+   DDGNNKKQKKVINQT YPQP +  DN A+ AHDIQRRNQEENRE
Sbjct: 121 KANNSNSCKKNDDNNSDDGNNKKQKKVINQTCYPQPPLYRDNGADLAHDIQRRNQEENRE 180

Query: 181 VTDLWNMDDITSSHYNINCPMVPANNATFNFDDEPHFNHLDPFFLIEAFGCSSVDASLEN 239
             +  NMDDITSSHYNIN PM+PANN TFNFDDEP+F+HLDPFFL EAFGCSSVDASL+N
Sbjct: 181 KQNPSNMDDITSSHYNINSPMIPANNTTFNFDDEPYFDHLDPFFLFEAFGCSSVDASLDN 240

[Close]

BLAST of CmoCh12G012230 vs. TAIR 10
Match: AT5G52600.1 (myb domain protein 82 )

HSP 1 Score: 198.0 bits (502), Expect = 8.7e-51
Identity = 91/118 (77.12%), Postives = 101/118 (85.59%), Query Frame = 0


Query: 8   KQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYLRPNIKRG 67
           K   K+ LWKPEED+IL++YVETHGEGNWA +S+ SGL RGGKSCRLRWKNYLRPNIKRG
Sbjct: 9   KSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKNYLRPNIKRG 68

Query: 68  GMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKRKVNES 126
            MS +E+DLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK     ++   ES
Sbjct: 69  SMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKKPNSRRQNAPES 126

[Close]

BLAST of CmoCh12G012230 vs. TAIR 10
Match: AT5G35550.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-39
Identity = 69/106 (65.09%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 8   KQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYLRPNIKRG 67
           +++  +  W   ED ILR+Y+ THGEG W+T+  ++GL R GKSCRLRWKNYLRP IKRG
Sbjct: 11  REELNRGAWTDHEDKILRDYITTHGEGKWSTLPNQAGLKRCGKSCRLRWKNYLRPGIKRG 70

Query: 68  GMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 114
            +S +EE+LIIR+H LLGNRWSLIAGRLPGRTDNE+KN+WN++L K
Sbjct: 71  NISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRK 116

[Close]

BLAST of CmoCh12G012230 vs. TAIR 10
Match: AT5G40330.1 (myb domain protein 23 )

HSP 1 Score: 160.6 bits (405), Expect = 1.5e-39
Identity = 73/112 (65.18%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 8   KQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYLRPNIKRG 67
           + + KK LW  EED IL +YV THG+G+W  +++++GL R GKSCRLRW NYL PN+ RG
Sbjct: 9   EHEYKKGLWTVEEDKILMDYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVNRG 68

Query: 68  GMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKN-GLQD 119
             + +EEDLIIR+HKLLGNRWSLIA R+PGRTDN+VKNYWNTHL+K  GL D
Sbjct: 69  NFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGLGD 120

[Close]

BLAST of CmoCh12G012230 vs. TAIR 10
Match: AT5G14750.1 (myb domain protein 66 )

HSP 1 Score: 156.4 bits (394), Expect = 2.9e-38
Identity = 90/195 (46.15%), Postives = 120/195 (61.54%), Query Frame = 0


Query: 12  KKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYLRPNIKRGGMSK 71
           KK LW  EED IL +YV+ HG+G+W  +++++GL R GKSCRLRW NYL PN+KRG  ++
Sbjct: 17  KKGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVKRGNFTE 76

Query: 72  EEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKN-GLQDKRKVNESSSCKK 131
           +EEDLIIR+HKLLGNRWSLIA R+PGRTDN+VKNYWNTHL+K  G++D          +K
Sbjct: 77  QEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGIKD----------QK 136

Query: 132 KDEDDGNNKKQKKVINQTSYPQPQMCS---DNWANQAHDIQRRNQ-----------EENR 191
             + +G+   Q  + N T   +    S   DN      +IQ  +Q           E+  
Sbjct: 137 TKQSNGDIVYQINLPNPTETSEETKISNIVDNNNILGDEIQEDHQGSNYLSSLWVHEDEF 196

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BLAST of CmoCh12G012230 vs. TAIR 10
Match: AT3G27920.1 (myb domain protein 0 )

HSP 1 Score: 155.6 bits (392), Expect = 5.0e-38
Identity = 76/127 (59.84%), Postives = 93/127 (73.23%), Query Frame = 0


Query: 9   QQAKKNLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYLRPNIKRGG 68
           Q+ KK LW  EED IL +YV  HG G W  + +++GL R GKSCRLRW NYL PN+ +G 
Sbjct: 12  QEYKKGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGN 71

Query: 69  MSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKRKVNESSSC 128
            +++EEDLIIR+HKLLGNRWSLIA R+PGRTDN+VKNYWNTHL+K  + D      SS+ 
Sbjct: 72  FTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLVGD-----YSSAV 131

Query: 129 KKKDEDD 136
           K   EDD
Sbjct: 132 KTTGEDD 133

The following BLAST results are available for this feature:

BLAST of CmoCh12G012230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LTF7	1.2e-49	77.12	Transcription factor MYB82 OS=Arabidopsis thaliana OX=3702 GN=MYB82 PE=1 SV=1	[more]
Q9FJA2	1.7e-38	65.09	Transcription factor TT2 OS=Arabidopsis thaliana OX=3702 GN=TT2 PE=1 SV=1	[more]
Q96276	2.2e-38	65.18	Transcription factor MYB23 OS=Arabidopsis thaliana OX=3702 GN=MYB23 PE=1 SV=1	[more]
A0A4D6Q4S0	2.4e-37	53.38	Transcription factor MYB1 OS=Crocosmia x crocosmiiflora OX=1053288 GN=MYB2 PE=2 ...	[more]
Q9SEI0	4.1e-37	46.15	Transcription factor WER OS=Arabidopsis thaliana OX=3702 GN=WER PE=1 SV=1	[more]

BLAST of CmoCh12G012230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FGK0	1.8e-136	100.00	transcription factor WER-like OS=Cucurbita moschata OX=3662 GN=LOC111443992 PE=4...	[more]
A0A6J1HMX7	9.5e-130	96.64	transcription factor WER-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11146...	[more]
A0A5D3BGT2	1.3e-115	86.72	Transcription factor WER-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A6J1G3P0	1.3e-115	86.72	transcription factor MYB82 OS=Cucurbita moschata OX=3662 GN=LOC111450489 PE=4 SV...	[more]
A0A1S3C427	1.3e-115	86.72	transcription factor WER-like OS=Cucumis melo OX=3656 GN=LOC103496778 PE=4 SV=1	[more]

BLAST of CmoCh12G012230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52600.1	8.7e-51	77.12	myb domain protein 82	[more]
AT5G35550.1	1.2e-39	65.09	Duplicated homeodomain-like superfamily protein	[more]
AT5G40330.1	1.5e-39	65.18	myb domain protein 23	[more]
AT5G14750.1	2.9e-38	46.15	myb domain protein 66	[more]
AT3G27920.1	5.0e-38	59.84	myb domain protein 0	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 157..177
None	No IPR available	GENE3D	1.10.10.60		coord: 4..66 e-value: 3.0E-17 score: 64.2
None	No IPR available	GENE3D	1.10.10.60		coord: 69..148 e-value: 2.3E-20 score: 74.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..156
None	No IPR available	PANTHER	PTHR47999	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	coord: 5..225
None	No IPR available	PANTHER	PTHR47999:SF21	TUBER-SPECIFIC AND SUCROSE-RESPONSIVE ELEMENT BINDING FACTOR	coord: 5..225
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 12..62 e-value: 5.3E-12 score: 55.9 coord: 65..113 e-value: 1.8E-16 score: 70.7
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 61..111 score: 10.51063
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 8..60 score: 10.41773
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 16..60 e-value: 1.3716E-9 score: 50.2666
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 69..111 e-value: 9.23458E-12 score: 56.4298
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 66..111 e-value: 4.2E-14 score: 52.5 coord: 14..60 e-value: 6.8E-13 score: 48.6
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 61..115 score: 23.929272
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 8..60 score: 16.439093
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 11..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G012230.1	CmoCh12G012230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000976	transcription cis-regulatory region binding
molecular_function	GO:0022857	transmembrane transporter activity