CmoCh12G011250 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G011250
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	40S ribosomal protein S24
Location	Cmo_Chr12: 10264913 .. 10266422 (-)
RNA-Seq Expression	CmoCh12G011250
Synteny	CmoCh12G011250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTGCCATCCAGTCTTTTTATCATCCCGACTCAGGTTAAGAGCTGCCGTTTCTCTGCGCCTTCGCCCTTCCAAGAGCTTCAAGCTTTCCATCCTCTTTGGGGCACATCCAGTCATGGCGGACAAGGCAGTCACTATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTCTCCAGGAAGCAATTCGTAAGTTTCTCAGATCGCACACCTTCGTTCTTGCTTTCCGCATTCCTGTTCTTTTAGGCCTTGATGTTGTGTGATCCCGTGGCGTTTGATTCTTGTGTGGCGATGTTAACTTGTTTTTTTATTTCGTTTTTGGTTTTTGAGTTTGGAGTTTGTTAGTTCGTGGATTCTGGTGTGGTACTGAAGTGGATGAGTTGCATTTGTTTGACGCTGTAAAGGGTTCTCTTATGTTTAATCGAAAACCTTAATGTCTTAAATGAATCTGAAGTTTTTCGTTTCTTTATTACTTGGAGCTTAGGGTATTTAGTGCTTGCCACTTTGACGACCGTGGTTTCTTTAGGGCTGGTGATTTTTGTTCCTTGGTAGCTCAGAGACTCCTGTTTGTTTAATATTTTGATGGGGGTTGGAAGAGATTTTGAAGTCGTTTATAACCTGTTTGTCCCATGTTTATTTCAGGTCATTGATGTTCTTCACCCAGGCAGACCCAATGTCTCAAAGGTAAATCCATTTTCGATTCAATTTCCTTATTCTTTTTGGTTGAATTTATGTTATTTTACTTCAGTAATTGTCTTTCATATGTGCAAAGTTCTTTAGAATACAACATGAATCTCATCAATTACTTCTATCGGGTACCTCTTCTGTCTTGAACATTATAACTAGTACTAATTTTTATACACTCGTTGCTTATTTCATGCTCCTTTTGGTAATTTCCGAAGTTTCATTGAAATGGTGACATCTAAACTTTTCTGTAAAGCTTATGAAATTAAGGCCGTATTGTTCTGGCATTCATGATGCTTAATTCTTTTGCATTTTGGCATATGTTGCTCATCATGTGATATGTTTCTATATCTCGCTCTTAAGGCTGAGCTAAAGGAGAAGTTGGGCAGAATCTACGACGTGAAAGACCCAAATGCCATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGAAAATCTACCGGGTTCGGTTTGATCTATGACTCTGTTGAGAATGCCAAGAAGTATGAGCCAAAGTACAGGCTGATCAGGGTAATTTACATTCTCCCTCTAAACCAAAATTCAATAATCAAACTCGACATTACTCAAACTCAACCGTTTTTCTCGTTTCAGAATGGACTCGACACCAAGGTAGAGAAGTCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCCAAGAAAATCCGTGGAGTTAAGAAGGTAAGTAAAAACATTCATAGCTAGTCGACGAGATCTCGAATGATGAAACATTACTATTTACCACTGGTTGATGTCTTTTTACAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAGAAATGA

mRNA sequence

GTTTTGCCATCCAGTCTTTTTATCATCCCGACTCAGGTTAAGAGCTGCCGTTTCTCTGCGCCTTCGCCCTTCCAAGAGCTTCAAGCTTTCCATCCTCTTTGGGGCACATCCAGTCATGGCGGACAAGGCAGTCACTATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTCTCCAGGAAGCAATTCGTCATTGATGTTCTTCACCCAGGCAGACCCAATGTCTCAAAGGCTGAGCTAAAGGAGAAGTTGGGCAGAATCTACGACGTGAAAGACCCAAATGCCATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGAAAATCTACCGGGTTCGGTTTGATCTATGACTCTGTTGAGAATGCCAAGAAGTATGAGCCAAAGTACAGGCTGATCAGGAATGGACTCGACACCAAGGTAGAGAAGTCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCCAAGAAAATCCGTGGAGTTAAGAAGTCGACGAGATCTCGAATGATGAAACATTACTATTTACCACTGGTTGATGTCTTTTTACAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAGAAATGA

Coding sequence (CDS)

ATGGCGGACAAGGCAGTCACTATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTCTCCAGGAAGCAATTCGTCATTGATGTTCTTCACCCAGGCAGACCCAATGTCTCAAAGGCTGAGCTAAAGGAGAAGTTGGGCAGAATCTACGACGTGAAAGACCCAAATGCCATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGAAAATCTACCGGGTTCGGTTTGATCTATGACTCTGTTGAGAATGCCAAGAAGTATGAGCCAAAGTACAGGCTGATCAGGAATGGACTCGACACCAAGGTAGAGAAGTCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCCAAGAAAATCCGTGGAGTTAAGAAGTCGACGAGATCTCGAATGATGAAACATTACTATTTACCACTGGTTGATGTCTTTTTACAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAGAAATGA

Protein sequence

MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK

Homology

[Close]

BLAST of CmoCh12G011250 vs. ExPASy Swiss-Prot
Match: Q9SS17 (40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.8e-58
Identity = 113/125 (90.40%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKL R+Y+VKDPNAIFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKS 126
           GVKK+
Sbjct: 121 GVKKT 125

[Close]

BLAST of CmoCh12G011250 vs. ExPASy Swiss-Prot
Match: Q8LC83 (40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2)

HSP 1 Score: 221.9 bits (564), Expect = 5.2e-57
Identity = 110/125 (88.00%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELKEKL R+Y+VKDPNAIF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKS 126
           GVKK+
Sbjct: 121 GVKKT 125

[Close]

BLAST of CmoCh12G011250 vs. ExPASy Swiss-Prot
Match: Q962Q6 (40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.4e-38
Identity = 81/125 (64.80%), Postives = 100/125 (80.00%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           M +   TIRTRKFMTNRLL+RKQ V DVLHPG+P VSK E++EKL ++Y V  P+ +FVF
Sbjct: 1   MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
            F+T+FGGGKSTGF LIYD+++ AKK+EPK+RL R+GL  K   +RKQ KERKNR KK+R
Sbjct: 61  GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 120

Query: 121 GVKKS 126
           G KKS
Sbjct: 121 GTKKS 124

[Close]

BLAST of CmoCh12G011250 vs. ExPASy Swiss-Prot
Match: Q56JU9 (40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2)

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-37
Identity = 81/120 (67.50%), Postives = 96/120 (80.00%), Query Frame = 0


Query: 6   VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTH 65
           VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E++EKL ++Y    P+ IFVF FRTH
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTH 64

Query: 66  FGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKS 125
           FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K+
Sbjct: 65  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 123

[Close]

BLAST of CmoCh12G011250 vs. ExPASy Swiss-Prot
Match: P62847 (40S ribosomal protein S24 OS=Homo sapiens OX=9606 GN=RPS24 PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-37
Identity = 81/120 (67.50%), Postives = 96/120 (80.00%), Query Frame = 0


Query: 6   VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTH 65
           VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E++EKL ++Y    P+ IFVF FRTH
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTH 64

Query: 66  FGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKS 125
           FGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K+
Sbjct: 65  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 123

[Close]

BLAST of CmoCh12G011250 vs. ExPASy TrEMBL
Match: A0A6J1HN66 (40S ribosomal protein S24 OS=Cucurbita maxima OX=3661 GN=LOC111465719 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.7e-64
Identity = 137/157 (87.26%), Postives = 137/157 (87.26%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK 158
           GVKK                    TKASDAAKAGKKK
Sbjct: 121 GVKK--------------------TKASDAAKAGKKK 137

[Close]

BLAST of CmoCh12G011250 vs. ExPASy TrEMBL
Match: A0A6J1FGN1 (40S ribosomal protein S24 OS=Cucurbita moschata OX=3662 GN=LOC111444017 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.7e-64
Identity = 137/157 (87.26%), Postives = 137/157 (87.26%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK 158
           GVKK                    TKASDAAKAGKKK
Sbjct: 121 GVKK--------------------TKASDAAKAGKKK 137

[Close]

BLAST of CmoCh12G011250 vs. ExPASy TrEMBL
Match: A0A0A0LFK1 (40S ribosomal protein S24 OS=Cucumis sativus OX=3659 GN=Csa_2G012120 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 7.8e-64
Identity = 136/157 (86.62%), Postives = 136/157 (86.62%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK 158
           GVKK                    TKASDAAK GKKK
Sbjct: 121 GVKK--------------------TKASDAAKGGKKK 137

[Close]

BLAST of CmoCh12G011250 vs. ExPASy TrEMBL
Match: A0A6J1KJ42 (40S ribosomal protein S24 OS=Cucurbita maxima OX=3661 GN=LOC111493687 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.3e-63
Identity = 135/157 (85.99%), Postives = 137/157 (87.26%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPN+IFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNSIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK 158
           GVKK                    TKASD+AKAGKKK
Sbjct: 121 GVKK--------------------TKASDSAKAGKKK 137

[Close]

BLAST of CmoCh12G011250 vs. ExPASy TrEMBL
Match: A0A6J1CN14 (40S ribosomal protein S24 OS=Momordica charantia OX=3673 GN=LOC111013098 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.3e-63
Identity = 136/157 (86.62%), Postives = 136/157 (86.62%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKL RIYDVKDPNAIFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK 158
           GVKK                    TKASDAAKAGKKK
Sbjct: 121 GVKK--------------------TKASDAAKAGKKK 137

[Close]

BLAST of CmoCh12G011250 vs. TAIR 10
Match: AT3G04920.1 (Ribosomal protein S24e family protein )

HSP 1 Score: 226.1 bits (575), Expect = 2.0e-59
Identity = 113/125 (90.40%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKL R+Y+VKDPNAIFVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKS 126
           GVKK+
Sbjct: 121 GVKKT 125

[Close]

BLAST of CmoCh12G011250 vs. TAIR 10
Match: AT5G28060.1 (Ribosomal protein S24e family protein )

HSP 1 Score: 221.9 bits (564), Expect = 3.7e-58
Identity = 110/125 (88.00%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVF 60
           MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELKEKL R+Y+VKDPNAIF F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 120
           KFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 121 GVKKS 126
           GVKK+
Sbjct: 121 GVKKT 125

The following BLAST results are available for this feature:

BLAST of CmoCh12G011250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SS17	2.8e-58	90.40	40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1	[more]
Q8LC83	5.2e-57	88.00	40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2	[more]
Q962Q6	1.4e-38	64.80	40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1	[more]
Q56JU9	1.2e-37	67.50	40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2	[more]
P62847	1.2e-37	67.50	40S ribosomal protein S24 OS=Homo sapiens OX=9606 GN=RPS24 PE=1 SV=1	[more]

BLAST of CmoCh12G011250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HN66	2.7e-64	87.26	40S ribosomal protein S24 OS=Cucurbita maxima OX=3661 GN=LOC111465719 PE=3 SV=1	[more]
A0A6J1FGN1	2.7e-64	87.26	40S ribosomal protein S24 OS=Cucurbita moschata OX=3662 GN=LOC111444017 PE=3 SV=...	[more]
A0A0A0LFK1	7.8e-64	86.62	40S ribosomal protein S24 OS=Cucumis sativus OX=3659 GN=Csa_2G012120 PE=3 SV=1	[more]
A0A6J1KJ42	1.3e-63	85.99	40S ribosomal protein S24 OS=Cucurbita maxima OX=3661 GN=LOC111493687 PE=3 SV=1	[more]
A0A6J1CN14	1.3e-63	86.62	40S ribosomal protein S24 OS=Momordica charantia OX=3673 GN=LOC111013098 PE=3 SV...	[more]

BLAST of CmoCh12G011250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04920.1	2.0e-59	90.40	Ribosomal protein S24e family protein	[more]
AT5G28060.1	3.7e-58	88.00	Ribosomal protein S24e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001976	Ribosomal protein S24e	PFAM	PF01282	Ribosomal_S24e	coord: 25..103 e-value: 5.9E-35 score: 119.1
IPR001976	Ribosomal protein S24e	PANTHER	PTHR10496	40S RIBOSOMAL PROTEIN S24	coord: 1..132
IPR001976	Ribosomal protein S24e	HAMAP	MF_00545	Ribosomal_S24e	coord: 4..106 score: 19.458813
None	No IPR available	GENE3D	3.30.70.3370		coord: 1..132 e-value: 1.1E-57 score: 195.3
None	No IPR available	PANTHER	PTHR10496:SF18	40S RIBOSOMAL PROTEIN S24	coord: 1..132
IPR018098	Ribosomal S24e conserved site	PROSITE	PS00529	RIBOSOMAL_S24E	coord: 66..88
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 6..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G011250.1	CmoCh12G011250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome