CmoCh12G009700 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G009700
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	S-acyltransferase
Location	Cmo_Chr12: 9059860 .. 9060560 (+)
RNA-Seq Expression	CmoCh12G009700
Synteny	CmoCh12G009700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAACCTTTAGCAAGCCGAAGACCACAATCCCTTGATAGCAACCCATCATCAACTCTTCCATTGTCGACAATGTTGCTCCGGTACCGTAATCTGGTGAATTCTTCAACCTTTCCCTCAGTTTCAAACTCAGAAATTTAACCGATTGTGATATACAACCAATCATGGGATACTATAATCTGGTATGTTCTTGATCCATGGGGAGATCGCTCAGGGACTGGGTGGGGGATTGAGTCAGTTACCAAGCATGTCACCATGGTGAAGCGCGCTAAGGGAGCAGTTAGTAAATTTGAAAACCCTCGAATCTCTTTTTTTTTTTACCAATTACGTTATGTTTGAGTTTGATTTCCTCAACACAGAGGAGCCATGGGGAGGTAGAAGATAATAGAAGGCGAGGGAATAAGCGGGTGTGACTTCCATCTAATCTACCTATGCAACACTTGACAAATATTCCAGGAAAAGCTGTTGAAAAAGGTTTCTCTGGCACATCAACCAGCCTTGGTCCTCTTCAGCTTGAAGCACGCAGTGGTTTCCACACAAGCAGAGCAATGTCGAGCTCCACCATGGCCGCCTCTTGTTCGGAGAGCAGTTTGGGCTCGCTTGACATCCATCCGATCAGAATATCCTCCTCAGGAGCTGAAGAGTCTAAGAGACTCACTGGCTCAAAAGGGACTTCCACTGTCAAGGTCGACTATTGA

mRNA sequence

ATGGTGAAACCTTTAGCAAGCCGAAGACCACAATCCCTTGATAGCAACCCATCATCAACTCTTCCATTGTCGACAATGTTGCTCCGGTACCGGACTGGGTGGGGGATTGAGTCAGTTACCAAGCATGTCACCATGGTGAAGCGCGCTAAGGGAGCAGTTAAGGAGCCATGGGGAGGAAAAGCTGTTGAAAAAGGTTTCTCTGGCACATCAACCAGCCTTGGTCCTCTTCAGCTTGAAGCACGCAGTGGTTTCCACACAAGCAGAGCAATGTCGAGCTCCACCATGGCCGCCTCTTGTTCGGAGAGCAGTTTGGGCTCGCTTGACATCCATCCGATCAGAATATCCTCCTCAGGAGCTGAAGAGTCTAAGAGACTCACTGGCTCAAAAGGGACTTCCACTGTCAAGGTCGACTATTGA

Coding sequence (CDS)

ATGGTGAAACCTTTAGCAAGCCGAAGACCACAATCCCTTGATAGCAACCCATCATCAACTCTTCCATTGTCGACAATGTTGCTCCGGTACCGGACTGGGTGGGGGATTGAGTCAGTTACCAAGCATGTCACCATGGTGAAGCGCGCTAAGGGAGCAGTTAAGGAGCCATGGGGAGGAAAAGCTGTTGAAAAAGGTTTCTCTGGCACATCAACCAGCCTTGGTCCTCTTCAGCTTGAAGCACGCAGTGGTTTCCACACAAGCAGAGCAATGTCGAGCTCCACCATGGCCGCCTCTTGTTCGGAGAGCAGTTTGGGCTCGCTTGACATCCATCCGATCAGAATATCCTCCTCAGGAGCTGAAGAGTCTAAGAGACTCACTGGCTCAAAAGGGACTTCCACTGTCAAGGTCGACTATTGA

Protein sequence

MVKPLASRRPQSLDSNPSSTLPLSTMLLRYRTGWGIESVTKHVTMVKRAKGAVKEPWGGKAVEKGFSGTSTSLGPLQLEARSGFHTSRAMSSSTMAASCSESSLGSLDIHPIRISSSGAEESKRLTGSKGTSTVKVDY

Homology

[Close]

BLAST of CmoCh12G009700 vs. ExPASy Swiss-Prot
Match: Q9C533 (Probable protein S-acyltransferase 22 OS=Arabidopsis thaliana OX=3702 GN=PAT22 PE=2 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-07
Identity = 37/63 (58.73%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 67  SGTSTSLGPLQLEARSGFHTSRAMSSS--TMAASCSESSLGSLDIHPIRISSSGAEESKR 126
           + TS+ L PLQLEARS F TSRAMS S   M  S  ESSL S DIHP R+SS  AE++ +
Sbjct: 480 TSTSSGLAPLQLEARSAFQTSRAMSGSGNVMVTSSPESSLDSHDIHPFRVSSE-AEDAAQ 539

Query: 127 LTG 128
           L G
Sbjct: 540 LNG 541

[Close]

BLAST of CmoCh12G009700 vs. ExPASy TrEMBL
Match: A0A6J1HZG7 (S-acyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111467639 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.5e-21
Identity = 62/69 (89.86%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 59  GKAVEKGFSGTSTSLGPLQLEARSGFHTSRAMSSSTMAASCSESSLGSLDIHPIRISSSG 118
           GKAVEKGFSGTSTSLGPLQLEARS F TSRAMSSSTMAAS  ESSLGS DIHP RISSSG
Sbjct: 464 GKAVEKGFSGTSTSLGPLQLEARSAFQTSRAMSSSTMAASSPESSLGSPDIHPFRISSSG 523

Query: 119 AEESKRLTG 128
           AEESKR+TG
Sbjct: 524 AEESKRVTG 532

[Close]

BLAST of CmoCh12G009700 vs. ExPASy TrEMBL
Match: A0A6J1G1J6 (S-acyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111449823 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.5e-21
Identity = 62/69 (89.86%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 59  GKAVEKGFSGTSTSLGPLQLEARSGFHTSRAMSSSTMAASCSESSLGSLDIHPIRISSSG 118
           GKAVEKGFSGTSTSLGPLQLEARS F TSRAMSSSTMAAS  ESSLGS DIHP RISSSG
Sbjct: 464 GKAVEKGFSGTSTSLGPLQLEARSAFQTSRAMSSSTMAASSPESSLGSPDIHPFRISSSG 523

Query: 119 AEESKRLTG 128
           AEESKR+TG
Sbjct: 524 AEESKRVTG 532

[Close]

BLAST of CmoCh12G009700 vs. ExPASy TrEMBL
Match: A0A5D3D2V6 (S-acyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00090 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.0e-19
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 60  KAVEKGFSGTSTSLGPLQLEARSGFHTSRAMSSSTMAASCSESSLGSLDIHPIRISSSGA 119
           KAVEKGFSGTSTSLGPLQLEARS F TSRAMSSSTM AS  ESSL S DIHP RISSSGA
Sbjct: 484 KAVEKGFSGTSTSLGPLQLEARSAFQTSRAMSSSTMVASSPESSLDSPDIHPFRISSSGA 543

Query: 120 EESKRLTG 128
           EESKRLTG
Sbjct: 544 EESKRLTG 551

[Close]

BLAST of CmoCh12G009700 vs. ExPASy TrEMBL
Match: A0A6J1J896 (S-acyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111482637 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.0e-19
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 60  KAVEKGFSGTSTSLGPLQLEARSGFHTSRAMSSSTMAASCSESSLGSLDIHPIRISSSGA 119
           KAVEKGFSGTSTSLGPLQLEARS F TSRAMSSSTM AS  ESSL S DIHP RISSSGA
Sbjct: 484 KAVEKGFSGTSTSLGPLQLEARSAFQTSRAMSSSTMVASSPESSLDSPDIHPFRISSSGA 543

Query: 120 EESKRLTG 128
           EESKRLTG
Sbjct: 544 EESKRLTG 551

[Close]

BLAST of CmoCh12G009700 vs. ExPASy TrEMBL
Match: A0A0A0KQQ8 (S-acyltransferase OS=Cucumis sativus OX=3659 GN=Csa_5G606460 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.0e-19
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 60  KAVEKGFSGTSTSLGPLQLEARSGFHTSRAMSSSTMAASCSESSLGSLDIHPIRISSSGA 119
           KAVEKGFSGTSTSLGPLQLEARS F TSRAMSSSTM AS  ESSL S DIHP RISSSGA
Sbjct: 484 KAVEKGFSGTSTSLGPLQLEARSAFQTSRAMSSSTMVASSPESSLDSPDIHPFRISSSGA 543

Query: 120 EESKRLTG 128
           EESKRLTG
Sbjct: 544 EESKRLTG 551

[Close]

BLAST of CmoCh12G009700 vs. TAIR 10
Match: AT1G69420.2 (DHHC-type zinc finger family protein )

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-08
Identity = 37/63 (58.73%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 67  SGTSTSLGPLQLEARSGFHTSRAMSSS--TMAASCSESSLGSLDIHPIRISSSGAEESKR 126
           + TS+ L PLQLEARS F TSRAMS S   M  S  ESSL S DIHP R+SS  AE++ +
Sbjct: 480 TSTSSGLAPLQLEARSAFQTSRAMSGSGNVMVTSSPESSLDSHDIHPFRVSSE-AEDAAQ 539

Query: 127 LTG 128
           L G
Sbjct: 540 LNG 541

[Close]

BLAST of CmoCh12G009700 vs. TAIR 10
Match: AT1G69420.1 (DHHC-type zinc finger family protein )

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-08
Identity = 37/63 (58.73%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 67  SGTSTSLGPLQLEARSGFHTSRAMSSS--TMAASCSESSLGSLDIHPIRISSSGAEESKR 126
           + TS+ L PLQLEARS F TSRAMS S   M  S  ESSL S DIHP R+SS  AE++ +
Sbjct: 480 TSTSSGLAPLQLEARSAFQTSRAMSGSGNVMVTSSPESSLDSHDIHPFRVSSE-AEDAAQ 539

Query: 127 LTG 128
           L G
Sbjct: 540 LNG 541

The following BLAST results are available for this feature:

BLAST of CmoCh12G009700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C533	1.5e-07	58.73	Probable protein S-acyltransferase 22 OS=Arabidopsis thaliana OX=3702 GN=PAT22 P...	[more]

BLAST of CmoCh12G009700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HZG7	2.5e-21	89.86	S-acyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111467639 PE=3 SV=1	[more]
A0A6J1G1J6	2.5e-21	89.86	S-acyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111449823 PE=3 SV=1	[more]
A0A5D3D2V6	1.0e-19	88.24	S-acyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G0...	[more]
A0A6J1J896	1.0e-19	88.24	S-acyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111482637 PE=3 SV=1	[more]
A0A0A0KQQ8	1.0e-19	88.24	S-acyltransferase OS=Cucumis sativus OX=3659 GN=Csa_5G606460 PE=3 SV=1	[more]

BLAST of CmoCh12G009700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G69420.2	1.1e-08	58.73	DHHC-type zinc finger family protein	[more]
AT1G69420.1	1.1e-08	58.73	DHHC-type zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G009700.1	CmoCh12G009700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0018230	peptidyl-L-cysteine S-palmitoylation
biological_process	GO:0006612	protein targeting to membrane
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0019706	protein-cysteine S-palmitoyltransferase activity