CmoCh12G009060 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G009060
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	60S acidic ribosomal protein P3
Location	Cmo_Chr12: 8320700 .. 8326529 (+)
RNA-Seq Expression	CmoCh12G009060
Synteny	CmoCh12G009060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAATCCAAGCAGAGAAGCACCCAGATCCAGTCCCAGGGTCAGAATGATACAAACAACACTGTTTCCCACTTTTCACAGCGCACAAGAGAGAGAGAGAGAGAAAAAAAGACTTTGGGGGAGAGAGAAAGTAAAGTGTTGAGGTGAAGAAGAGAGAAAAAAACAAGTATAGAAATGTAGAGAGAGAGAGAAAGAGAAAGAGACCCAAAAAAGTAGTTGTATTGAAAATGAGAGGCAAGGCGAGGCATGGCAAGGCGTGCTGATCACTAACTGCAACAGAAGGAGGAGCCCAAACAAGCAGAAATGAACTGGAATCTTAATAATCAATTAATTAAAATTACTTCCTTTTCTTTTATGGGGATTTCTTATGTGACAGATAGATTTATTCTATAAACAAATTTAATTCTCAAGCATTTATATTAATCATTCACCAACTTTCAGCCCAGAAAGAACTTGTTTCCATTATTTATCCATCATTTTCGGACAACCCTGTTTGTGTAATTCAATTTAATTGAACTCCATAGAATAGAATCATAGTCCAAAGATTTTTTTTTTTTTTTTTCTCTCCAAAATTAATGACTTGGGTTTGGTTTTTATAGGTTAAAAGGGCACGGAAGGCACGAAAGGCACGAAAGGAGGAACGTAATCGTCCCGTTTTGCTTGATTACAAGCTTAGTCTCAGGTTCGGTTTATTTGATATTTAAACAAATATGTGATAACTATATAAACTTTCAAAAAAAAAATGTAATTTTTTGGTTTGATATGGGATTGAGTTCTGAAAAATGACAAAAGTTTAGGAACTTTTCATTTTATATTTAAACAAAATACTTAAAAAAAAAAAATCTACCATTTAACATGAAATTGAAAGTTCCAAAAAAGACTATTAATTCTGCAATAAAATCGTTCATATCCGGTAATGCAAGGGAAGCCATCGATAAGATACTAAAAGTCGTGAATATTTTTTGGAATTGGAATAGCCATTCCGCTCATTTCTCTCATCGAGATAAACAAGACGTATTCTATCATACCTTGTTCCCGCCAGGAAAAAAAGTGCAGCGCCCGTAAATCCATGAGAGATTATTTGTAGAATAGCTCCATTGTGTCCCGCATCGCTTCCTATAATTATGGAACCCATATGGGAGACGAAGGAGTAAGTGTTGAAGGAGGCTTCTCGTGACCATTTCTCCAGAGGTTTCACATCAATTGAGAGAGTATTCTTTGAATATAAACTCGTGACCATTTCTTAAATAGCCGATGTGGGACTTTTATCATCCAATACCTCCTCTCGAACAAAGTACACCTCTCCTTAATCGAATTCTTTTGGAGTCTTAGTTATTTTTTACCATGCCTTCGAGGAGGTTTGACTACTTTTCTTTTGGAGTTTTTTCCTCACATTTGAGGATTTACCAATTTATTGGCACGACTAAGTTTAGGGCATGGTATAAGTATACGATATTGAAGAATAAAAATATAGTAAAAATGAGATCTAGTATAGTATTTGTCGGTTTTTTTTAAAAAAAAAAAAAAAAAAGTCAAAGCATGCATGAAAAGCACGTAATTATTTTAGAGAAGCTTATATTTTAAGACAATTAATTATATGGTGACATTGATTGAATAATTCAAATTATGCATATGAAATGTGATAATTTAAATTATAATTAAAAAAAAAAGATTCCATAAAGCTCTATAATGAGAAATGAATTATTTATTTATTTATTTATTTTGAAAAGGATGGAGGGCAATTAAGGAAAATGGGCCAAATTGATTTTTGAAAAGCAAATGAATAATCAACCTCAATAATGCATATGGTCATACAGCTCAATTTGTTTTTTCATCCCCAAATAAAATAATGCTTCATTTATATAATATATTTAAAATAATATGAAATTTATTTAATTTCTAAAAAAATATTCAATTTCATTCTCCAACAGATCATCAAACGTGGAACAAACGACTCCAAAAGAAAAAGGAGTCTAGGCTCCTCGAAGACATAGTAAAAAATGATTAAGACTCCATAAACAAAGGGAGTCAAGCCTCGGTTATGGGCATACTCGTTCGAGGGGAGGTGTTGGATGAAAGTCCCACGTCGACTATTTTAGAGAATGATCATGGGTTTATAATAAAAGAATACTATCTCCATTAGTATGAGACCTAAAGCCAGGAGAGCATATGCTAAAAGTGGACAATATCATACCATTGTGGAGAGTTGTGTTCATCTAACATGACATTATTATTTTATTTCTTTTCCTACGTTTTTCTTCTCTACTTTAAAGTATCTGACATTAAATTTTTTAATTAAAAAAAAAGGCGATTAAATAAAAAATTATTAAATTTTAGTTTAGTCAAATTGGAGGGAGGAAGTCAAAAAGATTGAATTTCAAACTCAAAGAGGTAGCCCAAAGTCTATAAGCTAAATCCAATAGTATCTATAAGAAAATTCCCTAAGCTCTCGAACACCGAACACTTTTTGAATATTGAAATTTTTCGGTCTGAAGATTCAATCTCAAGAACAAGCTACAATGTAACAACTCGAATTTCTAGGACCTCTGTTTAGGGTCATTATTACATCCCTACGATTTTCATTTGGAGACTATTTTCGTTAGCGTTTTCAGCTGTGTGTAGAGCCTCCTCCTCCACCTATCGTCAACTAGAAGGAGACCTTGTGGGAATGAATTCGATCTCTCCAATTCTCTCTTTTGTCACACCCTAGTGCATTTGATAAGTCAAAGGAGTTGCCCCCACGAATCGGGTTCTTGTCATTGTCGTTCACCACCCTTTTATTCCTCATTACAAGTTGTGTTATGTTGAGTTACTGCTTCGTCACTATCGTTTCTGTTGAAAAAGTAGAATGAAAACGTCAAATTTAGACACGAGAGAAAAAAATCGATCTTAGTTTAGACTAGTTTAACTCAATTTACCTTTGTTTGGTCTAGCTCGGCCTAGTTTCTATCCAGTTTGTGACATTCATCCCATCTCCAGTTGGTTTTCCTTGTATTTTAGATTGATCTAGTGGTTTTCTTTAGGTTTTGAGTCCGTTCCAGAATTATTTAAGCCTCTTCTAATAGGATATTTGAGCTATAAAAGTCGTACATGAAAACGAGAGGTAAAGTGAACTTAGTGCTATAACGCCCCAAGAATAGGATTTAGAATCCAAATTTCACAACGCTGGGCCCCGACATTCCCCTACGACATGACTACTTATCCTTTTTAGGCTTTCCCGAGTTCTCTTTCGGGCTTCCCCTCAAGTCTCCATACCCTTGTAAGGAGTGTTTTGTTCTCCTCCCAACCAACCAATGTGGGAGGTCACAATCCACCCCCTCACTGGCACTCTCTCCTCTCTCCTATCGATGTGGGACCCCCGCCAAATCCACCCCCCTTTGAGGCTAGTGTCCTTATTGGCACACCGTCTCGTGTGTACCCCCTTTGGGGAACAGCCTCCTCGCTGGCACATAGTTCGGTGTCTGGCTCTGATACCATTTGTAACGGCCCAGATCCAGCCTCCTCGCTGGCACATAGTTCGGTGTCTAGCTCTGATATTTGTAACGGCCCAGATCCACCGCTAGCAGATATTGTCCTTTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGGCTTTAAAACGCATTTGCTAGGGGAAGATTTCCACACGCTTATAAAGGGTGTTTTGTTCTCCTCCCAACCAATGTGGGACATCACACCAAACCACATACTATTGGGAGACACATCGCTCTAATACTATTTCTAGCACCCCATGTTCATGATACTGATTATGATTCAAAATTCGGGTTCGACACTTGATGACTCCAACATTGCCTTACATCCTTTATGACATAGTCACGTTACTTATTTCTCGCTTTTAAGAGTGAATACTATCCCCACGAACCAACACATGTCCTTTAAGCATGCACTGGTTAGAGGCAAATTCGAATCTAAATTCTTGTTCCAATCCTATTATATAGAACGATCGAGTTAAGCCAAAGTACAAACTCTGTACATAAAATCCTATATGAGTTCCTTTGAAGAGGTTTCCACAACCTTGGATCCAATGTTCGAGTCATAACAAGTAAGATATCGTGGTGATCCGAGAGTAGACTCGCCAAAATTATTCTCTATTATTTGCGGGGATTTATTTGCTTAACTTTGATACGAGACTAATATTTTCTATAATTTAGTATTTTAAAAGATTTTTGGAGCCTATTAAGTATAAAATAAAACAATTTTTCTTTCCCAAAAGGGCAAGACTCAATCGAAAGTAACAAAACCTCAGGAGGGTAAAACAGTCATTTCAAACAAAAACCCTAATTTGTGGTCTCGCTAGGGCTTCCTCTCCTCAAAATAAAAACCAAACACCAATACGGAGAACGGCCGCTAGTCCTACGCTCTATCTTTCTTCTTCGCAATTTGCTTCGATCAAAATTCACGTTCGAAGATCAAACAATGGGAGTTTTCACCTTCGTTTGTCGGAAATCCGGTGGCGAGTGGACCGCCAATCAGTACTCAGGCGACCTTGAAGGTTCCGCCGCTTCAACCTATGATCTCCAGAGGAAGCTCGTTGCGTCTGCTCTCTCTGTCGATTCCTCCGGTTGCGTTCAGTCCTCATTCTCTTACGTTTCTCCCAGCTCGGCCGTTTTTCAGGTATTCTTCTTTTTCTCTGCTGGATATTCGCTGAAATAGGCGAAAACTTGTCGAGATTATCAATACATGTTCTGTTTTACCCGTTTGTCTAGTGGATTCTTCGAATGTATTTGATTTTATTGCTTGATTGTTCTCGATCTCACGCACTTACTCTTTAATGTTTGATTTTGTTAATCTCAGTATTTAACTGATTGTGTTTTTTTCCGTCGATTTGCAATGACGGGATTATCTTTACCTAGTTTTTTCCTTTTTGATGTGCGAGTGTTACTTTAAGTTCGATCTGTAGGGTAATATTGTTCATTTGCGAATATGGATTTTGATTATATAATCCACTAATATGAATTTGTTCAACCAGCAGACCTCCGAATTCTTTCTCAATATATGAACACATTTTGCATTTTGAATCATTTCATTGCTGGCAATCGTATTTCTAGTATGTTCATTGCTGAGTTTCTTGATTGGTTACAAGTTATCTGCATTCACCCTAACCTTTACATTGAATTTAAACTTCTTTGAATAAGAAAATCTGATATTGTGTGATTCCTTGTTGGGAAGCTTTCTTGCAAAGTATTTAGAAAAGCTTGGTTTAAGTGAAGGGTCCTTTGAATGAACTCTATTTTTGATATCTCCTGAAGTATCTGACTGCATTCCTCCCTGTTATTGCCTACCATACGCCTACCCTAAACCTTATTTTTTTCAGGTGATCATTGGTGGTGCTAGTGGCGGTGGTATCATTAGTGGTGGAGCAGCGGCAGCCGCCCCTGCTGGAGGAGCTGCACCAGCTGCAGAAGCCCCAGCTCCAGCGAAGGAGGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCTTTTCACTTTTTGATTAATTGGTATAATTACTTGTTATTGTTTATCAATCTCATAATTTTTAGCTCTAAAATCTTCTCTTCAGGATATTATGTCTATGCACTTACTTGAATTTGCCAGTTCATTAGCTGTTCTTGTTAAGGACATGGAATTTTGCTACTGATCTTTGTTAAATGGTTGAGAATTAGATGTGTTCTTTCTGATTACCTTCCCTTCGATTTATTTTTCGGTAAGTAGAGATGTCTATATAGCCCGTGGAGTCTGAATTTTGTGAGTACCTATTATCATACTTCACTTAACCAAGATTGTGGGCTAACCCGCCTTATAACCATCCTACCCGGTTCCTTGGCC

mRNA sequence

ATGGAAAATCCAAGCAGAGAAGCACCCAGATCCAGTCCCAGGGTTAAAAGGGCACGGAAGGCACGAAAGGCACGAAAGGAGGAACGGCTTCCTCTCCTCAAAATAAAAACCAAACACCAATACGGAGAACGGCCGCTAGTCCTACGCTCTATCTTTCTTCTTCGCAATTTGCTTCGATCAAAATTCACGTTCGAAGATCAAACAATGGGAGTTTTCACCTTCGTTTGTCGGAAATCCGGTGGCGAGTGGACCGCCAATCAGTACTCAGGCGACCTTGAAGGTTCCGCCGCTTCAACCTATGATCTCCAGAGGAAGCTCGTTGCGTCTGCTCTCTCTGTCGATTCCTCCGGTTGCGTTCAGTCCTCATTCTCTTACGTTTCTCCCAGCTCGGCCGTTTTTCAGGTGATCATTGGTGGTGCTAGTGGCGGTGGTATCATTAGTGGTGGAGCAGCGGCAGCCGCCCCTGCTGGAGGAGCTGCACCAGCTGCAGAAGCCCCAGCTCCAGCGAAGGAGGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCTTTTCACTTTTTGATTAATTGGTATAATTACTTGTTATTGTTTATCAATCTCATAATTTTTAGCTCTAAAATCTTCTCTTCAGGATATTATGTCTATGCACTTACTTGAATTTGCCAGTTCATTAGCTGTTCTTGTTAAGGACATGGAATTTTGCTACTGATCTTTGTTAAATGGTTGAGAATTAGATGTGTTCTTTCTGATTACCTTCCCTTCGATTTATTTTTCGGTAAGTAGAGATGTCTATATAGCCCGTGGAGTCTGAATTTTGTGAGTACCTATTATCATACTTCACTTAACCAAGATTGTGGGCTAACCCGCCTTATAACCATCCTACCCGGTTCCTTGGCC

Coding sequence (CDS)

ATGGAAAATCCAAGCAGAGAAGCACCCAGATCCAGTCCCAGGGTTAAAAGGGCACGGAAGGCACGAAAGGCACGAAAGGAGGAACGGCTTCCTCTCCTCAAAATAAAAACCAAACACCAATACGGAGAACGGCCGCTAGTCCTACGCTCTATCTTTCTTCTTCGCAATTTGCTTCGATCAAAATTCACGTTCGAAGATCAAACAATGGGAGTTTTCACCTTCGTTTGTCGGAAATCCGGTGGCGAGTGGACCGCCAATCAGTACTCAGGCGACCTTGAAGGTTCCGCCGCTTCAACCTATGATCTCCAGAGGAAGCTCGTTGCGTCTGCTCTCTCTGTCGATTCCTCCGGTTGCGTTCAGTCCTCATTCTCTTACGTTTCTCCCAGCTCGGCCGTTTTTCAGGTGATCATTGGTGGTGCTAGTGGCGGTGGTATCATTAGTGGTGGAGCAGCGGCAGCCGCCCCTGCTGGAGGAGCTGCACCAGCTGCAGAAGCCCCAGCTCCAGCGAAGGAGGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCTTTTCACTTTTTGATTAA

Protein sequence

MENPSREAPRSSPRVKRARKARKARKEERLPLLKIKTKHQYGERPLVLRSIFLLRNLLRSKFTFEDQTMGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLFD

Homology

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BLAST of CmoCh12G009060 vs. ExPASy Swiss-Prot
Match: P56724 (60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0701400 PE=3 SV=3)

HSP 1 Score: 131.7 bits (330), Expect = 8.5e-30
Identity = 80/120 (66.67%), Postives = 90/120 (75.00%), Query Frame = 0


Query: 69  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSP 128
           MGV+TFVCR SG EWTA Q  G+LE SAA+ Y+LQR+LVA+A + DS+  VQSSFS VSP
Sbjct: 1   MGVYTFVCRSSGDEWTAKQLKGELEASAATPYELQRRLVAAASAADSAAGVQSSFSMVSP 60

Query: 129 SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLFD 188
           SSAVFQVIIG   GG  I GGAAA A +GGAA  A      KEE KEES +DDLGFSLFD
Sbjct: 61  SSAVFQVIIGAVGGGAAIGGGAAAGAASGGAAAEAPKAEEKKEEEKEES-EDDLGFSLFD 119

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BLAST of CmoCh12G009060 vs. ExPASy Swiss-Prot
Match: Q9LVC9 (60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 5.5e-29
Identity = 73/119 (61.34%), Postives = 86/119 (72.27%), Query Frame = 0


Query: 69  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSP 128
           MGVF+FVC+  GGEWTA Q+ GDLE SA+STYDLQRKLV +ALS DSSG VQSSFS VSP
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 129 SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLF 188
           +SAVF V+IGG  GGG  +GG AAA   GG   AA      K++ + E ++ D GF LF
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEEEGDFGFDLF 119

[Close]

BLAST of CmoCh12G009060 vs. ExPASy Swiss-Prot
Match: O24413 (60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3)

HSP 1 Score: 125.6 bits (314), Expect = 6.1e-28
Identity = 74/121 (61.16%), Postives = 92/121 (76.03%), Query Frame = 0


Query: 69  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSP 128
           MGV+TFVCR +GGEWTA Q+SG++E SAA+ Y+LQR+LVA+A + DS   VQSSFS V+P
Sbjct: 1   MGVYTFVCRNNGGEWTAKQHSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTP 60

Query: 129 SSAVFQVIIGGASGGG-IISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLF 188
           SSAVFQVI+G   GG  ++SGG    A A G A AAEAP   K+E ++E  DDD+GFSLF
Sbjct: 61  SSAVFQVIVGAVGGGAMMVSGGGGGGAAASGGA-AAEAPKEEKKEEEKEESDDDMGFSLF 120

[Close]

BLAST of CmoCh12G009060 vs. ExPASy Swiss-Prot
Match: Q9SVZ6 (60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.2e-27
Identity = 75/121 (61.98%), Postives = 91/121 (75.21%), Query Frame = 0


Query: 69  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSP 128
           MGVFTFVC+  GG W+A Q+ G+LE SA+STY+LQRKLV  +LS DSSG VQSSFS VSP
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 129 SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDD--DLGFSL 188
           +SAVFQVI+GG  GGG  +GGAA++   GGA  AA AP    E+ KEES+++  D GF L
Sbjct: 61  TSAVFQVIVGGGGGGGFSAGGAASS--GGGAGEAAAAP-KEDEKKKEESEEEEGDFGFDL 118

[Close]

BLAST of CmoCh12G009060 vs. ExPASy TrEMBL
Match: A0A6J1FI91 (60S acidic ribosomal protein P3 OS=Cucurbita moschata OX=3662 GN=LOC111444187 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.6e-53
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 69  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSP 128
           MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSP
Sbjct: 1   MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSP 60

Query: 129 SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLFD 188
           SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLFD
Sbjct: 61  SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLFD 120

[Close]

BLAST of CmoCh12G009060 vs. ExPASy TrEMBL
Match: A0A6J1HYA3 (60S acidic ribosomal protein P3-like OS=Cucurbita maxima OX=3661 GN=LOC111468587 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 2.2e-49
Identity = 116/120 (96.67%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 69  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSP 128
           MGVFTFVCRKSGGEWTANQYSG LEGSAASTYDLQRKLVASALSVDSSG VQSSFSYVSP
Sbjct: 1   MGVFTFVCRKSGGEWTANQYSGVLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60

Query: 129 SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLFD 188
           SSAVFQVIIGGASGGGIISGG AAAAPAGGAAPAAEAPA AKEEVKEESDDDDLGFSLFD
Sbjct: 61  SSAVFQVIIGGASGGGIISGGEAAAAPAGGAAPAAEAPAAAKEEVKEESDDDDLGFSLFD 120

[Close]

BLAST of CmoCh12G009060 vs. ExPASy TrEMBL
Match: A0A0A0LJB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060400 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.3e-41
Identity = 101/121 (83.47%), Postives = 109/121 (90.08%), Query Frame = 0


Query: 69  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSP 128
           MGVFTFVCR SGG+WTANQYSGDLEGSA STY+LQRKLV SALSVDSSG VQSSFS+++P
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 129 SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAP-AAEAPAPAKEEVKEESDDDDLGFSLF 188
           SSAVFQVI+GG SGGG  +GG AAAAPAGGAAP AAEAPA  KEEVKEESDD+DLG SLF
Sbjct: 61  SSAVFQVIVGGGSGGGFSAGGGAAAAPAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

[Close]

BLAST of CmoCh12G009060 vs. ExPASy TrEMBL
Match: A0A6J1KB28 (60S acidic ribosomal protein P3-2-like OS=Cucurbita maxima OX=3661 GN=LOC111492258 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.2e-41
Identity = 101/121 (83.47%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 69  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSP 128
           MGVFTF+CR SGG+WTANQYSGDLEGSA STYDLQR LV + LSVD SG VQSSFSYV+P
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 129 SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAP-AAEAPAPAKEEVKEESDDDDLGFSLF 188
           +SAVFQVIIGG+SGGG I GG AAAAPAGG AP AAEAPA  KEEVKEESDDDDLGFSLF
Sbjct: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120

[Close]

BLAST of CmoCh12G009060 vs. ExPASy TrEMBL
Match: A0A6J1ENN1 (60S acidic ribosomal protein P3-2-like OS=Cucurbita moschata OX=3662 GN=LOC111436268 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.2e-41
Identity = 101/121 (83.47%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 69  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSP 128
           MGVFTF+CR SGG+WTANQYSGDLEGSA STYDLQR LV + LSVD SG VQSSFSYV+P
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 129 SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAP-AAEAPAPAKEEVKEESDDDDLGFSLF 188
           +SAVFQVIIGG+SGGG I GG AAAAPAGG AP AAEAPA  KEEVKEESDDDDLGFSLF
Sbjct: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120

[Close]

BLAST of CmoCh12G009060 vs. TAIR 10
Match: AT5G57290.1 (60S acidic ribosomal protein family )

HSP 1 Score: 129.0 bits (323), Expect = 3.9e-30
Identity = 73/119 (61.34%), Postives = 86/119 (72.27%), Query Frame = 0


Query: 69  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSP 128
           MGVF+FVC+  GGEWTA Q+ GDLE SA+STYDLQRKLV +ALS DSSG VQSSFS VSP
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 129 SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLF 188
           +SAVF V+IGG  GGG  +GG AAA   GG   AA      K++ + E ++ D GF LF
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEEEGDFGFDLF 119

[Close]

BLAST of CmoCh12G009060 vs. TAIR 10
Match: AT5G57290.3 (60S acidic ribosomal protein family )

HSP 1 Score: 124.8 bits (312), Expect = 7.4e-29
Identity = 73/119 (61.34%), Postives = 86/119 (72.27%), Query Frame = 0


Query: 69  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSP 128
           MGVF+FVC+  GGEWTA Q+ GDLE SA+STYDLQRKLV +ALS DSSG VQSSFS VSP
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 129 SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLF 188
           +SAVF V+IGG  GGG  +GG AAA   GG   AA      K++ + E ++ D GF LF
Sbjct: 61  TSAVF-VVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEEEGDFGFDLF 118

[Close]

BLAST of CmoCh12G009060 vs. TAIR 10
Match: AT4G25890.1 (60S acidic ribosomal protein family )

HSP 1 Score: 122.5 bits (306), Expect = 3.7e-28
Identity = 75/121 (61.98%), Postives = 91/121 (75.21%), Query Frame = 0


Query: 69  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSP 128
           MGVFTFVC+  GG W+A Q+ G+LE SA+STY+LQRKLV  +LS DSSG VQSSFS VSP
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 129 SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDD--DLGFSL 188
           +SAVFQVI+GG  GGG  +GGAA++   GGA  AA AP    E+ KEES+++  D GF L
Sbjct: 61  TSAVFQVIVGGGGGGGFSAGGAASS--GGGAGEAAAAP-KEDEKKKEESEEEEGDFGFDL 118

[Close]

BLAST of CmoCh12G009060 vs. TAIR 10
Match: AT5G57290.2 (60S acidic ribosomal protein family )

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-25
Identity = 59/81 (72.84%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 69  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSP 128
           MGVF+FVC+  GGEWTA Q+ GDLE SA+STYDLQRKLV +ALS DSSG VQSSFS VSP
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 129 SSAVFQVIIGGASGGGIISGG 150
           +SAVF V+IGG  GGG  +GG
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGG 81

The following BLAST results are available for this feature:

BLAST of CmoCh12G009060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P56724	8.5e-30	66.67	60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06...	[more]
Q9LVC9	5.5e-29	61.34	60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 ...	[more]
O24413	6.1e-28	61.16	60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3	[more]
Q9SVZ6	5.2e-27	61.98	60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 ...	[more]

BLAST of CmoCh12G009060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FI91	2.6e-53	100.00	60S acidic ribosomal protein P3 OS=Cucurbita moschata OX=3662 GN=LOC111444187 PE...	[more]
A0A6J1HYA3	2.2e-49	96.67	60S acidic ribosomal protein P3-like OS=Cucurbita maxima OX=3661 GN=LOC111468587...	[more]
A0A0A0LJB2	1.3e-41	83.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060400 PE=4 SV=1	[more]
A0A6J1KB28	2.2e-41	83.47	60S acidic ribosomal protein P3-2-like OS=Cucurbita maxima OX=3661 GN=LOC1114922...	[more]
A0A6J1ENN1	2.2e-41	83.47	60S acidic ribosomal protein P3-2-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]

BLAST of CmoCh12G009060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57290.1	3.9e-30	61.34	60S acidic ribosomal protein family	[more]
AT5G57290.3	7.4e-29	61.34	60S acidic ribosomal protein family	[more]
AT4G25890.1	3.7e-28	61.98	60S acidic ribosomal protein family	[more]
AT5G57290.2	1.0e-25	72.84	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 138..187 e-value: 8.1E-11 score: 42.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR47207:SF2	60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED	coord: 69..188
IPR044252	60S acidic ribosomal protein P3-like	PANTHER	PTHR47207	60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED	coord: 69..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G009060.1	CmoCh12G009060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome