CmoCh12G008690 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G008690
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Germin-like protein
Location	Cmo_Chr12: 7925586 .. 7927614 (-)
RNA-Seq Expression	CmoCh12G008690
Synteny	CmoCh12G008690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCCTTTGCTCATACAATGCTGTCACACCATTATTCTATTCATATTCATTTCTTGGCTTCAATTATATATTAACTTCCCCATCCACCACCTACCATACCCATCACTTCCTCCATTTTCTCATACTCTTCTCTTCTCAACCATGAAGCTACCTCTCCCTGCTCTGTTTGCTGCACCTCTTGCCTTCTTATTTGCCGTCACCATCGCCGATCCCGACTTGCTTCAAGACGTTTGTGTTGCCGATCTTGCTTCAGGTACCTACTTCAAGTGTTCTAGCTCTGTTCTTTCAAGTTCTTAGGTCTCCCCAATTCTCTAACAGTTGCATAATCATTGGTTTCTAATTTGGGGTTCTGGGTTAAGGTTGTGTGGGTCTAGAGTTGTTTTTGTTTTCGTTCAAAATGTCTCGTACTAATAGAAATGTTGTCATGTTAGAAATGTGAACGATATTCAACGTGAAAGAATGAGATGTTGCACTCTCTTCGAATCGAAGTTGAATTCGAACTACATTTCAAACTTTGACAACATTGATATTGGAAAGTAAACAGAGGAAGAACACAAGATTCAATGATTCTTCTATGTTCTAATCCATGTGGAACAGTTTTCGCATCCCTAACCTGACAATATCAAGCAAAATCTGCAAGATTGAAAGATTCTCTTGTGTTCTAATCCATGTGGAACAGTTTTCACATCCCTAAGCTAACAATATTAAGCAAAATCTGCAAGATTCAATGATTCTCCTATGTTCTAATCCATGTGGAACAGTTTTTGCATCCTAACCTAACAATATCAAGCAAAATCTGCAAGATTCAATGATTCTCCTATGTTCTAATCCATGTGGAACAGTTTTTGCATCCTAACCTAACAATATCAAGCAAAATCTGCAAGATTCAAAGATTCTCCTGTGTTCTAATCCATGTGGAACAGTTTTTGCATCCCTAACCCGACAATATCAAGAAAAATCTGCAAGATTCAATGATTCTCCTATGTTCTAATCCATGTGGAACAGTTTTCGCATCCCTAACCTGACAATATCAAGCAAAATCTGCAAGATTCAATGATTCTCCTATGTTCTAATCCATGTGGAACAGTTTTCACATTTCTAACCTAACAATATCAAGCAAAATCATCAAGTTTAAGCTCAAACTAGGCAAGATCATAGCATTTCCAAACAGTTTATTTTTCCAGATGTTAACATTTGAATCAAAACAGGAATCAAAGTAAACGGATTCACCTGCAAGTCAAATTTCTCAGCGGACGATTTCTTCTTCAATGGATTGGCCAAACCAGGGCTAACAAACAACACCCAAGGCTCGCGAGTAACTGCCGCCAATGTCCAATTTATCCCCGGCCTGAACACGCTCGGCGTTTCCCTAGCGCGGATCGACTACGCCCCCGGTGGCTTGAATCCACCGCACACACACCCGCGCGCCACCGAGATTGTGTTCGTCATCGAAGGCCAACTCGACGTCGGCTTCATAACCACCGCGAATGTCCTCGTCTCGAAGACGATCAAGATGGGCGAGATCTTCGTGTTCCCCAAGGGATTGGTCCACTTCCAGAAGAACAATGGAAAGGTTCCAGCGGCAGTGATTGCAGCATTCAACAGTCAGTTGCCTGGTACTCAATCGATTGCGGCAACGCTTTTCGCCGCATCTCCGCCGGTGCCGGACAATGTGTTGACGAAGGCGTTTCAGATTGGAACTAAAGAGGTTAAGAAGATCAAATCGAGACTTGCGCCAAAATAAGAGAGGCAAATCAATGGCGGTTTCCGTGAATCGAAATCGAAATCGAAGATTGTGTTTGGATTTTGATTTTGATTTGATTTGATTTTGATTTGATTTGGTTGTTGTGTTGTGTTTGTATTGTGATTTGTATTATTGCATTTCTGGGTTCCTTTGTTTCACTCATAATTTGAATAAGAATTGAGATTTGGGGATTTGTTCTTCATTTCTCTCTCCCTTCATTATTTTGGAATCATTTTTTGATAATGTAGATTGTATAATATTTTTTATTAGAATCAATTTTCTTTTT

mRNA sequence

CCCCTTTGCTCATACAATGCTGTCACACCATTATTCTATTCATATTCATTTCTTGGCTTCAATTATATATTAACTTCCCCATCCACCACCTACCATACCCATCACTTCCTCCATTTTCTCATACTCTTCTCTTCTCAACCATGAAGCTACCTCTCCCTGCTCTGTTTGCTGCACCTCTTGCCTTCTTATTTGCCGTCACCATCGCCGATCCCGACTTGCTTCAAGACGTTTGTGTTGCCGATCTTGCTTCAGGAATCAAAGTAAACGGATTCACCTGCAAGTCAAATTTCTCAGCGGACGATTTCTTCTTCAATGGATTGGCCAAACCAGGGCTAACAAACAACACCCAAGGCTCGCGAGTAACTGCCGCCAATGTCCAATTTATCCCCGGCCTGAACACGCTCGGCGTTTCCCTAGCGCGGATCGACTACGCCCCCGGTGGCTTGAATCCACCGCACACACACCCGCGCGCCACCGAGATTGTGTTCGTCATCGAAGGCCAACTCGACGTCGGCTTCATAACCACCGCGAATGTCCTCGTCTCGAAGACGATCAAGATGGGCGAGATCTTCGTGTTCCCCAAGGGATTGGTCCACTTCCAGAAGAACAATGGAAAGGTTCCAGCGGCAGTGATTGCAGCATTCAACAGTCAGTTGCCTGGTACTCAATCGATTGCGGCAACGCTTTTCGCCGCATCTCCGCCGGTGCCGGACAATGTGTTGACGAAGGCGTTTCAGATTGGAACTAAAGAGGTTAAGAAGATCAAATCGAGACTTGCGCCAAAATAAGAGAGGCAAATCAATGGCGGTTTCCGTGAATCGAAATCGAAATCGAAGATTGTGTTTGGATTTTGATTTTGATTTGATTTGATTTTGATTTGATTTGGTTGTTGTGTTGTGTTTGTATTGTGATTTGTATTATTGCATTTCTGGGTTCCTTTGTTTCACTCATAATTTGAATAAGAATTGAGATTTGGGGATTTGTTCTTCATTTCTCTCTCCCTTCATTATTTTGGAATCATTTTTTGATAATGTAGATTGTATAATATTTTTTATTAGAATCAATTTTCTTTTT

Coding sequence (CDS)

ATGAAGCTACCTCTCCCTGCTCTGTTTGCTGCACCTCTTGCCTTCTTATTTGCCGTCACCATCGCCGATCCCGACTTGCTTCAAGACGTTTGTGTTGCCGATCTTGCTTCAGGAATCAAAGTAAACGGATTCACCTGCAAGTCAAATTTCTCAGCGGACGATTTCTTCTTCAATGGATTGGCCAAACCAGGGCTAACAAACAACACCCAAGGCTCGCGAGTAACTGCCGCCAATGTCCAATTTATCCCCGGCCTGAACACGCTCGGCGTTTCCCTAGCGCGGATCGACTACGCCCCCGGTGGCTTGAATCCACCGCACACACACCCGCGCGCCACCGAGATTGTGTTCGTCATCGAAGGCCAACTCGACGTCGGCTTCATAACCACCGCGAATGTCCTCGTCTCGAAGACGATCAAGATGGGCGAGATCTTCGTGTTCCCCAAGGGATTGGTCCACTTCCAGAAGAACAATGGAAAGGTTCCAGCGGCAGTGATTGCAGCATTCAACAGTCAGTTGCCTGGTACTCAATCGATTGCGGCAACGCTTTTCGCCGCATCTCCGCCGGTGCCGGACAATGTGTTGACGAAGGCGTTTCAGATTGGAACTAAAGAGGTTAAGAAGATCAAATCGAGACTTGCGCCAAAATAA

Protein sequence

MKLPLPALFAAPLAFLFAVTIADPDLLQDVCVADLASGIKVNGFTCKSNFSADDFFFNGLAKPGLTNNTQGSRVTAANVQFIPGLNTLGVSLARIDYAPGGLNPPHTHPRATEIVFVIEGQLDVGFITTANVLVSKTIKMGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSIAATLFAASPPVPDNVLTKAFQIGTKEVKKIKSRLAPK

Homology

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BLAST of CmoCh12G008690 vs. ExPASy Swiss-Prot
Match: Q6I544 (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0277500 PE=2 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 5.8e-83
Identity = 149/196 (76.02%), Postives = 170/196 (86.73%), Query Frame = 0


Query: 20  TIADPDLLQDVCVADLASGIKVNGFTCKSNFSADDFFFNGLAKPGLTNNTQGSRVTAANV 79
           T  DPDLLQD+CVADL S +KVNGF CK+  + DDF+F GLA  G TNNT GS VT ANV
Sbjct: 24  TAGDPDLLQDICVADLTSAVKVNGFACKAAVTEDDFYFKGLAAAGNTNNTYGSVVTGANV 83

Query: 80  QFIPGLNTLGVSLARIDYAPGGLNPPHTHPRATEIVFVIEGQLDVGFITTANVLVSKTIK 139
           + +PGLNTLGVS++RIDYAPGGLNPPHTHPRATE+VFV++G LDVGFITTAN L +KTI 
Sbjct: 84  EKLPGLNTLGVSMSRIDYAPGGLNPPHTHPRATEMVFVLQGTLDVGFITTANKLYTKTIS 143

Query: 140 MGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSIAATLFAASPPVPDNVLTKAFQ 199
            G++FVFP+GL+HFQKNNG  PAAVI+AFNSQLPGTQS+A TLFAASP VPD VLTKAFQ
Sbjct: 144 AGDVFVFPRGLLHFQKNNGDTPAAVISAFNSQLPGTQSLAMTLFAASPEVPDGVLTKAFQ 203

Query: 200 IGTKEVKKIKSRLAPK 216
           +GTKEV+KIKSRLAPK
Sbjct: 204 VGTKEVEKIKSRLAPK 219

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BLAST of CmoCh12G008690 vs. ExPASy Swiss-Prot
Match: Q9M263 (Germin-like protein subfamily 2 member 4 OS=Arabidopsis thaliana OX=3702 GN=GLP10 PE=2 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.3e-79
Identity = 149/210 (70.95%), Postives = 173/210 (82.38%), Query Frame = 0


Query: 9   FAAPLAFLFAVTIADPDLLQDVCVADLASGIKVNGFTCK--SNFSADDFFFNGLAKPGLT 68
           F   L+    V   DPD LQD+CVAD  SGIKVNGFTCK  SN +A DFFF G+ KP + 
Sbjct: 9   FFTLLSLNVIVLAYDPDTLQDLCVADRTSGIKVNGFTCKPESNITASDFFFAGIGKPAVV 68

Query: 69  NNTQGSRVTAANVQFIPGLNTLGVSLARIDYAPGGLNPPHTHPRATEIVFVIEGQLDVGF 128
           NNT GS VT ANV+ I GLNTLGVSLARIDYAPGGLNPPHTHPRATE++FV+EG+LDVGF
Sbjct: 69  NNTVGSAVTGANVEKIAGLNTLGVSLARIDYAPGGLNPPHTHPRATEVIFVLEGELDVGF 128

Query: 129 ITTANVLVSKTIKMGEIFVFPKGLVHFQKNNGKV-PAAVIAAFNSQLPGTQSIAATLFAA 188
           ITTAN L +KT+K GE+FVFP+GL+H+QKNN K  PA+VI+AFNSQLPGTQSIAATLF A
Sbjct: 129 ITTANKLFAKTVKKGEVFVFPRGLIHYQKNNDKAKPASVISAFNSQLPGTQSIAATLFTA 188

Query: 189 SPPVPDNVLTKAFQIGTKEVKKIKSRLAPK 216
           +P +PD+VLT  FQIGTKE++KIKS+ APK
Sbjct: 189 TPAIPDHVLTTTFQIGTKEIEKIKSKFAPK 218

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BLAST of CmoCh12G008690 vs. ExPASy Swiss-Prot
Match: Q9S8P4 (Rhicadhesin receptor OS=Pisum sativum OX=3888 GN=GER1 PE=1 SV=2)

HSP 1 Score: 296.6 bits (758), Expect = 2.3e-79
Identity = 159/217 (73.27%), Postives = 172/217 (79.26%), Query Frame = 0


Query: 1   MKLPLPALFAAPLAFLFAVTIADPDLLQDVCVADLASGIKVNGFTCK--SNFSADDFFFN 60
           MKL +  L    LA     T AD D LQD+CVAD AS I VNGF CK  SN +A+DFF N
Sbjct: 1   MKL-IAVLLLVVLATATTATAADADALQDLCVADYASVILVNGFACKPASNVTAEDFFSN 60

Query: 61  GLAKPGLTNNTQGSRVTAANVQFIPGLNTLGVSLARIDYAPGGLNPPHTHPRATEIVFVI 120
            L K G TNNT GS VT ANVQ IPGLNTLGVS+ARIDYAPGGLNPPHTHPRATE+VFV+
Sbjct: 61  LLVKQGATNNTFGSLVTGANVQRIPGLNTLGVSMARIDYAPGGLNPPHTHPRATEMVFVL 120

Query: 121 EGQLDVGFITTANVLVSKTIKMGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSI 180
           EGQLDVGFITT N L++KTI  GE FVFPKGLVHFQKNNG  PA VIA FNSQLPGT +I
Sbjct: 121 EGQLDVGFITTTNQLIAKTIAKGETFVFPKGLVHFQKNNGWEPATVIAGFNSQLPGTVNI 180

Query: 181 AATLFAASPPVPDNVLTKAFQIGTKEVKKIKSRLAPK 216
             TLF A+PPVPDNVLTKAFQIGTKEV+KIKS+ APK
Sbjct: 181 PLTLFNATPPVPDNVLTKAFQIGTKEVQKIKSKFAPK 216

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BLAST of CmoCh12G008690 vs. ExPASy Swiss-Prot
Match: Q9SPV5 (Nectarin-1 OS=Nicotiana plumbaginifolia OX=4092 GN=NEC1 PE=1 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 5.1e-79
Identity = 146/208 (70.19%), Postives = 175/208 (84.13%), Query Frame = 0


Query: 13  LAFLFAVTI------ADPDLLQDVCVADLASGIKVNGFTCKSNFSADDFFFNGLAKPGLT 72
           + FLFA++I      AD D+LQDVCVADL S +KVNGF CK+NF+A DF    ++KPG T
Sbjct: 18  ILFLFAISIDRYCFAADEDMLQDVCVADLHSKVKVNGFPCKTNFTAADFSSFAISKPGAT 77

Query: 73  NNTQGSRVTAANVQFIPGLNTLGVSLARIDYAPGGLNPPHTHPRATEIVFVIEGQLDVGF 132
           NN  GS+VT ANV+ +PGLNTLGVSLARIDYAPGG+NPPHTHPRA+E+VFV+EG+LDVGF
Sbjct: 78  NNKFGSKVTTANVEQVPGLNTLGVSLARIDYAPGGINPPHTHPRASEMVFVMEGELDVGF 137

Query: 133 ITTANVLVSKTIKMGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSIAATLFAAS 192
           ITTANVLVSK I  GE+FVFP+GLVHFQKNNGK+PAAV++AFNSQLPGTQSI  TLF AS
Sbjct: 138 ITTANVLVSKQITKGEVFVFPRGLVHFQKNNGKIPAAVVSAFNSQLPGTQSIPITLFGAS 197

Query: 193 PPVPDNVLTKAFQIGTKEVKKIKSRLAP 215
           P VPD+VL + FQI  ++V++IKS+ AP
Sbjct: 198 PTVPDDVLAQTFQINIEDVQQIKSKFAP 225

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BLAST of CmoCh12G008690 vs. ExPASy Swiss-Prot
Match: Q94EG3 (Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana sanderae OX=164110 GN=NECI PE=1 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 6.7e-79
Identity = 148/208 (71.15%), Postives = 175/208 (84.13%), Query Frame = 0


Query: 13  LAFLFAVTI------ADPDLLQDVCVADLASGIKVNGFTCKSNFSADDFFFNGLAKPGLT 72
           + FL A++I      AD D+LQDVCVADL S +KVNGF CK+NF+A DF    ++KPG T
Sbjct: 18  ILFLLAISIDRYCFAADEDMLQDVCVADLHSKVKVNGFPCKTNFTAADFSSLAISKPGAT 77

Query: 73  NNTQGSRVTAANVQFIPGLNTLGVSLARIDYAPGGLNPPHTHPRATEIVFVIEGQLDVGF 132
           NN  GS VT ANV+ +PGLNTLGVSLARIDYAPGG+NPPHTHPRA+E+VFV+EG+LDVGF
Sbjct: 78  NNKFGSVVTTANVEQVPGLNTLGVSLARIDYAPGGINPPHTHPRASEMVFVMEGELDVGF 137

Query: 133 ITTANVLVSKTIKMGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSIAATLFAAS 192
           ITTANVLVSK I  GE+FVFP+GLVHFQKNNG+VPAAVI+AFNSQLPGTQSI  TLF AS
Sbjct: 138 ITTANVLVSKKIIKGEVFVFPRGLVHFQKNNGEVPAAVISAFNSQLPGTQSIPITLFGAS 197

Query: 193 PPVPDNVLTKAFQIGTKEVKKIKSRLAP 215
           PPVPD+VL + FQI T++V++IKS+ AP
Sbjct: 198 PPVPDDVLAQTFQINTEDVQQIKSKFAP 225

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BLAST of CmoCh12G008690 vs. ExPASy TrEMBL
Match: A0A6J1FJ75 (Germin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111444388 PE=3 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 3.0e-114
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MKLPLPALFAAPLAFLFAVTIADPDLLQDVCVADLASGIKVNGFTCKSNFSADDFFFNGL 60
           MKLPLPALFAAPLAFLFAVTIADPDLLQDVCVADLASGIKVNGFTCKSNFSADDFFFNGL
Sbjct: 1   MKLPLPALFAAPLAFLFAVTIADPDLLQDVCVADLASGIKVNGFTCKSNFSADDFFFNGL 60

Query: 61  AKPGLTNNTQGSRVTAANVQFIPGLNTLGVSLARIDYAPGGLNPPHTHPRATEIVFVIEG 120
           AKPGLTNNTQGSRVTAANVQFIPGLNTLGVSLARIDYAPGGLNPPHTHPRATEIVFVIEG
Sbjct: 61  AKPGLTNNTQGSRVTAANVQFIPGLNTLGVSLARIDYAPGGLNPPHTHPRATEIVFVIEG 120

Query: 121 QLDVGFITTANVLVSKTIKMGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSIAA 180
           QLDVGFITTANVLVSKTIKMGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSIAA
Sbjct: 121 QLDVGFITTANVLVSKTIKMGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSIAA 180

Query: 181 TLFAASPPVPDNVLTKAFQIGTKEVKKIKSRLAPK 216
           TLFAASPPVPDNVLTKAFQIGTKEVKKIKSRLAPK
Sbjct: 181 TLFAASPPVPDNVLTKAFQIGTKEVKKIKSRLAPK 215

[Close]

BLAST of CmoCh12G008690 vs. ExPASy TrEMBL
Match: A0A6J1HYB9 (Germin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111468597 PE=3 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 3.4e-110
Identity = 209/215 (97.21%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 1   MKLPLPALFAAPLAFLFAVTIADPDLLQDVCVADLASGIKVNGFTCKSNFSADDFFFNGL 60
           MKLPLPALFAAPLAFLFAV IADPDLLQDVCVADL SGIKVNGFTCKSNFSADDFFFNGL
Sbjct: 1   MKLPLPALFAAPLAFLFAVAIADPDLLQDVCVADLTSGIKVNGFTCKSNFSADDFFFNGL 60

Query: 61  AKPGLTNNTQGSRVTAANVQFIPGLNTLGVSLARIDYAPGGLNPPHTHPRATEIVFVIEG 120
           AK GLTNNTQGSRVT ANVQ IPGLNTLGVSLARIDYAPGGLNPPHTHPRATEIVFVIEG
Sbjct: 61  AKAGLTNNTQGSRVTGANVQSIPGLNTLGVSLARIDYAPGGLNPPHTHPRATEIVFVIEG 120

Query: 121 QLDVGFITTANVLVSKTIKMGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSIAA 180
           QLDVGFITTANVLVSKTIK GEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSIAA
Sbjct: 121 QLDVGFITTANVLVSKTIKTGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSIAA 180

Query: 181 TLFAASPPVPDNVLTKAFQIGTKEVKKIKSRLAPK 216
           TLFAASPPVPDNVLTKAFQIGTKEVKKIKSRLAPK
Sbjct: 181 TLFAASPPVPDNVLTKAFQIGTKEVKKIKSRLAPK 215

[Close]

BLAST of CmoCh12G008690 vs. ExPASy TrEMBL
Match: A0A6J1G2M3 (Germin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111450261 PE=3 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 5.8e-102
Identity = 195/216 (90.28%), Postives = 205/216 (94.91%), Query Frame = 0


Query: 1   MKLPLPALFAAPLA-FLFAVTIADPDLLQDVCVADLASGIKVNGFTCKSNFSADDFFFNG 60
           MKLPLPALFAAPLA F FAV  ADPDLLQDVCVADLASGIKVNGFTCKSNFSA+DFFF+G
Sbjct: 3   MKLPLPALFAAPLAFFFFAVAAADPDLLQDVCVADLASGIKVNGFTCKSNFSANDFFFDG 62

Query: 61  LAKPGLTNNTQGSRVTAANVQFIPGLNTLGVSLARIDYAPGGLNPPHTHPRATEIVFVIE 120
           LAKPG TNN+ GSRVT ANVQ IPGLNTLGVSL+RIDYAP GLNPPHTHPRATEIVFV++
Sbjct: 63  LAKPGATNNSLGSRVTGANVQSIPGLNTLGVSLSRIDYAPDGLNPPHTHPRATEIVFVLD 122

Query: 121 GQLDVGFITTANVLVSKTIKMGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSIA 180
           G+LDVGFITTANVLVSK+IK GEIFVFPKGLVHFQKNNGKVPAAVI+AFNSQLPGTQSIA
Sbjct: 123 GELDVGFITTANVLVSKSIKKGEIFVFPKGLVHFQKNNGKVPAAVISAFNSQLPGTQSIA 182

Query: 181 ATLFAASPPVPDNVLTKAFQIGTKEVKKIKSRLAPK 216
           ATLFAASPPVPDNVLTKAFQI TKEVKKIKS+LAPK
Sbjct: 183 ATLFAASPPVPDNVLTKAFQIETKEVKKIKSKLAPK 218

[Close]

BLAST of CmoCh12G008690 vs. ExPASy TrEMBL
Match: A0A6J1KKN0 (Germin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111494017 PE=3 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 9.9e-102
Identity = 193/216 (89.35%), Postives = 204/216 (94.44%), Query Frame = 0


Query: 1   MKLPLPALFAAPLAFL-FAVTIADPDLLQDVCVADLASGIKVNGFTCKSNFSADDFFFNG 60
           MKLPLPALFAAP AF+ F V  ADPDLLQDVCVADLASGIKVNGF CKSNFSA+DFFF+G
Sbjct: 3   MKLPLPALFAAPFAFIFFTVAAADPDLLQDVCVADLASGIKVNGFACKSNFSANDFFFDG 62

Query: 61  LAKPGLTNNTQGSRVTAANVQFIPGLNTLGVSLARIDYAPGGLNPPHTHPRATEIVFVIE 120
           LAKPG TNN+ GSRVT ANVQ IPGLNTLGVSL+RIDYAP GLNPPHTHPRATEIVFV++
Sbjct: 63  LAKPGATNNSLGSRVTGANVQSIPGLNTLGVSLSRIDYAPDGLNPPHTHPRATEIVFVLD 122

Query: 121 GQLDVGFITTANVLVSKTIKMGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSIA 180
           G+LDVGFITTANVLVSKTIK GEIFVFPKGLVHFQKNNGKVPAAVI+AFNSQLPGTQSIA
Sbjct: 123 GELDVGFITTANVLVSKTIKKGEIFVFPKGLVHFQKNNGKVPAAVISAFNSQLPGTQSIA 182

Query: 181 ATLFAASPPVPDNVLTKAFQIGTKEVKKIKSRLAPK 216
           ATLFAASPP+PDNVLTKAFQIGTKEVKKIKS+LAPK
Sbjct: 183 ATLFAASPPMPDNVLTKAFQIGTKEVKKIKSKLAPK 218

[Close]

BLAST of CmoCh12G008690 vs. ExPASy TrEMBL
Match: A0A0A0LK24 (Germin-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G035370 PE=3 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 8.4e-101
Identity = 195/217 (89.86%), Postives = 200/217 (92.17%), Query Frame = 0


Query: 1   MKL-PLPALFAAPLA-FLFAVTIADPDLLQDVCVADLASGIKVNGFTCKSNFSADDFFFN 60
           MKL P  ALF A LA F F +T ADPDLLQDVCVADLASGIKVNGFTCKSNFSADDFFFN
Sbjct: 1   MKLHPFSALFTASLAFFFFVITAADPDLLQDVCVADLASGIKVNGFTCKSNFSADDFFFN 60

Query: 61  GLAKPGLTNNTQGSRVTAANVQFIPGLNTLGVSLARIDYAPGGLNPPHTHPRATEIVFVI 120
           GLAKPG TNNT GSRVT ANVQ IPGLNTLGVSLARIDYAPGGLNPPHTHPRATEIVFV+
Sbjct: 61  GLAKPGATNNTLGSRVTGANVQSIPGLNTLGVSLARIDYAPGGLNPPHTHPRATEIVFVL 120

Query: 121 EGQLDVGFITTANVLVSKTIKMGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSI 180
           EGQLDVGFITT NVLVSK+IK GEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQ PGTQSI
Sbjct: 121 EGQLDVGFITTGNVLVSKSIKKGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQFPGTQSI 180

Query: 181 AATLFAASPPVPDNVLTKAFQIGTKEVKKIKSRLAPK 216
           AA LFAASPPVPDNVLTKAFQ+GTKEV+KIKSRLAPK
Sbjct: 181 AAALFAASPPVPDNVLTKAFQVGTKEVEKIKSRLAPK 217

[Close]

BLAST of CmoCh12G008690 vs. TAIR 10
Match: AT3G62020.1 (germin-like protein 10 )

HSP 1 Score: 297.4 bits (760), Expect = 9.5e-81
Identity = 149/210 (70.95%), Postives = 173/210 (82.38%), Query Frame = 0


Query: 9   FAAPLAFLFAVTIADPDLLQDVCVADLASGIKVNGFTCK--SNFSADDFFFNGLAKPGLT 68
           F   L+    V   DPD LQD+CVAD  SGIKVNGFTCK  SN +A DFFF G+ KP + 
Sbjct: 9   FFTLLSLNVIVLAYDPDTLQDLCVADRTSGIKVNGFTCKPESNITASDFFFAGIGKPAVV 68

Query: 69  NNTQGSRVTAANVQFIPGLNTLGVSLARIDYAPGGLNPPHTHPRATEIVFVIEGQLDVGF 128
           NNT GS VT ANV+ I GLNTLGVSLARIDYAPGGLNPPHTHPRATE++FV+EG+LDVGF
Sbjct: 69  NNTVGSAVTGANVEKIAGLNTLGVSLARIDYAPGGLNPPHTHPRATEVIFVLEGELDVGF 128

Query: 129 ITTANVLVSKTIKMGEIFVFPKGLVHFQKNNGKV-PAAVIAAFNSQLPGTQSIAATLFAA 188
           ITTAN L +KT+K GE+FVFP+GL+H+QKNN K  PA+VI+AFNSQLPGTQSIAATLF A
Sbjct: 129 ITTANKLFAKTVKKGEVFVFPRGLIHYQKNNDKAKPASVISAFNSQLPGTQSIAATLFTA 188

Query: 189 SPPVPDNVLTKAFQIGTKEVKKIKSRLAPK 216
           +P +PD+VLT  FQIGTKE++KIKS+ APK
Sbjct: 189 TPAIPDHVLTTTFQIGTKEIEKIKSKFAPK 218

[Close]

BLAST of CmoCh12G008690 vs. TAIR 10
Match: AT1G09560.1 (germin-like protein 5 )

HSP 1 Score: 293.9 bits (751), Expect = 1.1e-79
Identity = 143/201 (71.14%), Postives = 168/201 (83.58%), Query Frame = 0


Query: 17  FAVTIADPDLLQDVCVADLASGIKVNGFTCK--SNFSADDFFFNGLAKPGLTNNTQGSRV 76
           F  + ADPD+LQD+CVADL SGIK+NGF CK  +  ++ DFF  GLAKPGLTNNT G+ V
Sbjct: 18  FISSSADPDMLQDLCVADLPSGIKINGFPCKDAATVTSADFFSQGLAKPGLTNNTFGALV 77

Query: 77  TAANVQFIPGLNTLGVSLARIDYAPGGLNPPHTHPRATEIVFVIEGQLDVGFITTANVLV 136
           T ANV  IPGLNTLGVSL+RIDYAPGGLNPPHTHPRATE+VFV+EG LDVGF+TTAN L+
Sbjct: 78  TGANVMTIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFVLEGTLDVGFLTTANKLI 137

Query: 137 SKTIKMGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSIAATLFAASPPVPDNVL 196
           S+++K G++F FPKGLVHFQKNNG VPA+VIAAFNSQLPGTQS+ ATLF ++PPVPDN+L
Sbjct: 138 SQSLKKGDVFAFPKGLVHFQKNNGDVPASVIAAFNSQLPGTQSLGATLFGSTPPVPDNIL 197

Query: 197 TKAFQIGTKEVKKIKSRLAPK 216
            +AFQ     VK IKS+  PK
Sbjct: 198 AQAFQTSPGTVKHIKSKFQPK 218

[Close]

BLAST of CmoCh12G008690 vs. TAIR 10
Match: AT1G02335.1 (germin-like protein subfamily 2 member 2 precursor )

HSP 1 Score: 283.9 bits (725), Expect = 1.1e-76
Identity = 140/217 (64.52%), Postives = 172/217 (79.26%), Query Frame = 0


Query: 1   MKLPLPALFAAPLAFLFAVTIADPDLLQDVCVADLASGIKVNGFTCKS--NFSADDFFFN 60
           M   +  + A     + ++   DPD LQD+CVAD + G K+NGF CK   N +  DFFF 
Sbjct: 2   MNSRISIIIALSCIMITSIRAYDPDALQDLCVADKSHGTKLNGFPCKETLNITESDFFFA 61

Query: 61  GLAKPGLTNNTQGSRVTAANVQFIPGLNTLGVSLARIDYAPGGLNPPHTHPRATEIVFVI 120
           G++KP + N+T GS VT ANV+ IPGLNTL VSLARIDYAPGGLNPPHTHPRATE+V+V+
Sbjct: 62  GISKPAVINSTMGSAVTGANVEKIPGLNTLSVSLARIDYAPGGLNPPHTHPRATEVVYVL 121

Query: 121 EGQLDVGFITTANVLVSKTIKMGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSI 180
           EG+L+VGFITTAN L +KTIK+GE+FVFP+GLVHFQKNNGK PA+V++AFNSQLPGT S+
Sbjct: 122 EGELEVGFITTANKLFTKTIKIGEVFVFPRGLVHFQKNNGKSPASVLSAFNSQLPGTASV 181

Query: 181 AATLFAASPPVPDNVLTKAFQIGTKEVKKIKSRLAPK 216
           AATLFAA P +P++VLTK FQ+G+K V KIK RLA K
Sbjct: 182 AATLFAAEPALPEDVLTKTFQVGSKMVDKIKERLATK 218

[Close]

BLAST of CmoCh12G008690 vs. TAIR 10
Match: AT3G62020.2 (germin-like protein 10 )

HSP 1 Score: 276.6 bits (706), Expect = 1.7e-74
Identity = 135/181 (74.59%), Postives = 157/181 (86.74%), Query Frame = 0


Query: 38  GIKVNGFTCK--SNFSADDFFFNGLAKPGLTNNTQGSRVTAANVQFIPGLNTLGVSLARI 97
           GIKVNGFTCK  SN +A DFFF G+ KP + NNT GS VT ANV+ I GLNTLGVSLARI
Sbjct: 9   GIKVNGFTCKPESNITASDFFFAGIGKPAVVNNTVGSAVTGANVEKIAGLNTLGVSLARI 68

Query: 98  DYAPGGLNPPHTHPRATEIVFVIEGQLDVGFITTANVLVSKTIKMGEIFVFPKGLVHFQK 157
           DYAPGGLNPPHTHPRATE++FV+EG+LDVGFITTAN L +KT+K GE+FVFP+GL+H+QK
Sbjct: 69  DYAPGGLNPPHTHPRATEVIFVLEGELDVGFITTANKLFAKTVKKGEVFVFPRGLIHYQK 128

Query: 158 NNGKV-PAAVIAAFNSQLPGTQSIAATLFAASPPVPDNVLTKAFQIGTKEVKKIKSRLAP 216
           NN K  PA+VI+AFNSQLPGTQSIAATLF A+P +PD+VLT  FQIGTKE++KIKS+ AP
Sbjct: 129 NNDKAKPASVISAFNSQLPGTQSIAATLFTATPAIPDHVLTTTFQIGTKEIEKIKSKFAP 188

[Close]

BLAST of CmoCh12G008690 vs. TAIR 10
Match: AT5G26700.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 247.3 bits (630), Expect = 1.1e-65
Identity = 119/199 (59.80%), Postives = 157/199 (78.89%), Query Frame = 0


Query: 19  VTIADPDLLQDVCVADLASGIKVNGFTCK--SNFSADDFFFNGLAKPGLTNNTQGSRVTA 78
           V +A  ++LQDVCVADL++ +KVNG+TCK  +  + +DF+F GLA    TN + GS VT 
Sbjct: 17  VAMASAEMLQDVCVADLSNAVKVNGYTCKDSTQITPEDFYFKGLANIAATNTSTGSVVTG 76

Query: 79  ANVQFIPGLNTLGVSLARIDYAPGGLNPPHTHPRATEIVFVIEGQLDVGFITTANVLVSK 138
           ANV+ +PGLNTLG+S++RIDYAP GLNPPH HPRA+EI+FV+EGQL VGF+TTA  L++K
Sbjct: 77  ANVEKLPGLNTLGLSMSRIDYAPNGLNPPHVHPRASEIIFVLEGQLYVGFVTTAGKLIAK 136

Query: 139 TIKMGEIFVFPKGLVHFQKNNGKVPAAVIAAFNSQLPGTQSIAATLFAASPPVPDNVLTK 198
            +  G++F FPKGL+HFQKN    PA+V+AAF+SQLPGTQS+ A+LF A   +PD++L K
Sbjct: 137 NLNKGDVFTFPKGLIHFQKNIANSPASVLAAFDSQLPGTQSLVASLFGA---LPDDILAK 196

Query: 199 AFQIGTKEVKKIKSRLAPK 216
           +FQ+  K+VKKIK R APK
Sbjct: 197 SFQLKHKQVKKIKLRYAPK 212

The following BLAST results are available for this feature:

BLAST of CmoCh12G008690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6I544	5.8e-83	76.02	Germin-like protein 5-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0277500...	[more]
Q9M263	1.3e-79	70.95	Germin-like protein subfamily 2 member 4 OS=Arabidopsis thaliana OX=3702 GN=GLP1...	[more]
Q9S8P4	2.3e-79	73.27	Rhicadhesin receptor OS=Pisum sativum OX=3888 GN=GER1 PE=1 SV=2	[more]
Q9SPV5	5.1e-79	70.19	Nectarin-1 OS=Nicotiana plumbaginifolia OX=4092 GN=NEC1 PE=1 SV=1	[more]
Q94EG3	6.7e-79	71.15	Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana sanderae OX=164110 GN=NECI PE=1...	[more]

BLAST of CmoCh12G008690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJ75	3.0e-114	100.00	Germin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111444388 PE=3 SV=1	[more]
A0A6J1HYB9	3.4e-110	97.21	Germin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111468597 PE=3 SV=1	[more]
A0A6J1G2M3	5.8e-102	90.28	Germin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111450261 PE=3 SV=1	[more]
A0A6J1KKN0	9.9e-102	89.35	Germin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111494017 PE=3 SV=1	[more]
A0A0A0LK24	8.4e-101	89.86	Germin-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G035370 PE=3 SV=1	[more]

BLAST of CmoCh12G008690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G62020.1	9.5e-81	70.95	germin-like protein 10	[more]
AT1G09560.1	1.1e-79	71.14	germin-like protein 5	[more]
AT1G02335.1	1.1e-76	64.52	germin-like protein subfamily 2 member 2 precursor	[more]
AT3G62020.2	1.7e-74	74.59	germin-like protein 10	[more]
AT5G26700.1	1.1e-65	59.80	RmlC-like cupins superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001929	Germin	PRINTS	PR00325	GERMIN	coord: 136..156 score: 55.26 coord: 169..184 score: 50.29 coord: 106..126 score: 63.79
IPR006045	Cupin 1	SMART	SM00835	Cupin_1_3	coord: 58..206 e-value: 1.6E-34 score: 130.7
IPR006045	Cupin 1	PFAM	PF00190	Cupin_1	coord: 59..206 e-value: 4.8E-48 score: 162.6
IPR014710	RmlC-like jelly roll fold	GENE3D	2.60.120.10	Jelly Rolls	coord: 22..214 e-value: 9.7E-81 score: 271.9
None	No IPR available	PANTHER	PTHR31238	GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3	coord: 14..213
None	No IPR available	PANTHER	PTHR31238:SF199	GERMIN-LIKE PROTEIN	coord: 14..213
None	No IPR available	CDD	cd02241	cupin_OxOx	coord: 23..212 e-value: 1.2933E-87 score: 254.828
IPR019780	Germin, manganese binding site	PROSITE	PS00725	GERMIN	coord: 101..114
IPR011051	RmlC-like cupin domain superfamily	SUPERFAMILY	51182	RmlC-like cupins	coord: 23..211

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G008690.1	CmoCh12G008690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010497	plasmodesmata-mediated intercellular transport
biological_process	GO:2000280	regulation of root development
cellular_component	GO:0048046	apoplast
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0030145	manganese ion binding