CmoCh12G007840 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G007840
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Photosystem II protein D1
Location	Cmo_Chr12: 6370345 .. 6371041 (+)
RNA-Seq Expression	CmoCh12G007840
Synteny	CmoCh12G007840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGAGGGAGAGTGGGAACTGAGTTTACGTATGGGCGTCCTTGGATTGCTGTTGCATATTCCGCTCCTGTTGCAGCTGCTACTGCTGGTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTGACGGAATCTCTGGTACTTTAAACTTCATGATTGTATTCCATTACAGGAGCACAGCATCCTTATGCACCCATTTCACATATTAGGTCTAGCTGGTGTATTGGCTTGGCTCCCTATTCAGCGCTATGCATGGTTCCTTGGTAACTTATATCTAGTTTGATCAGGGAAACCACAGAGAATGAATCCGCTAATTCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCATCGTAGCTCCCTTTTCATGGTTATTTTGGCCGATTGATCTTCCATACAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTCTAGTAGGTATCTGGTTCACTTAGGTATTAGCACTATGCCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGCGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTTAGATTCTTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTGATGCTCACAACTTCCCTCTAGACCTAGCTGCTCTTGAAGTTCCATCTATCTAG

mRNA sequence

ATGGGTGGAGGGAGAGTGGGAACTGAGTTTACGTATGGGCGTCCTTGGATTGCTGTTGCATATTCCGCTCCTGTTGCAGCTGCTACTGCTGGTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGAGCACAGCATCCTTATGCACCCATTTCACATATTAGGTCTAGCTGGTGTATTGGCTTGGCTCCCTATTCAGCGCTATGCATGCACTATGCCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGCGTAGTTGATAGTCAAGGTCGTATTCTTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTGATGCTCACAACTTCCCTCTAGACCTAGCTGCTCTTGAAGTTCCATCTATCTAG

Coding sequence (CDS)

ATGGGTGGAGGGAGAGTGGGAACTGAGTTTACGTATGGGCGTCCTTGGATTGCTGTTGCATATTCCGCTCCTGTTGCAGCTGCTACTGCTGGTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGAGCACAGCATCCTTATGCACCCATTTCACATATTAGGTCTAGCTGGTGTATTGGCTTGGCTCCCTATTCAGCGCTATGCATGCACTATGCCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGCGTAGTTGATAGTCAAGGTCGTATTCTTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTGATGCTCACAACTTCCCTCTAGACCTAGCTGCTCTTGAAGTTCCATCTATCTAG

Protein sequence

MGGGRVGTEFTYGRPWIAVAYSAPVAAATAGFLIYPIGQGSFSDGAQHPYAPISHIRSSWCIGLAPYSALCMHYAFQLKWFQFQPIRSVVDSQGRILNRANLGMEVMHERDAHNFPLDLAALEVPSI

Homology

[Close]

BLAST of CmoCh12G007840 vs. ExPASy Swiss-Prot
Match: A1E9Y8 (Photosystem II protein D1 OS=Agrostis stolonifera OX=63632 GN=psbA PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-20
Identity = 83/214 (38.79%), Postives = 93/214 (43.46%), Query Frame = 0


Query: 14  RPWIAVAYSAPVAAATAGFLIYPIGQGSFSDG---------------------AQHP--- 73
           RPWIAVAYSAPVAAATA FLIYPIGQGSFSDG                       HP   
Sbjct: 140 RPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHM 199

Query: 74  ------------------------------------------------------------ 128
                                                                       
Sbjct: 200 LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLI 259

[Close]

BLAST of CmoCh12G007840 vs. ExPASy Swiss-Prot
Match: A8Y9F0 (Photosystem II protein D1 OS=Lolium perenne OX=4522 GN=psbA PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-20
Identity = 82/214 (38.32%), Postives = 93/214 (43.46%), Query Frame = 0


Query: 14  RPWIAVAYSAPVAAATAGFLIYPIGQGSFSDG---------------------AQHP--- 73
           RPWIAVAYSAPVAAATA FLIYPIGQGSFSDG                       HP   
Sbjct: 140 RPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHM 199

Query: 74  ------------------------------------------------------------ 128
                                                                       
Sbjct: 200 LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLI 259

[Close]

BLAST of CmoCh12G007840 vs. ExPASy Swiss-Prot
Match: Q6ENJ7 (Photosystem II protein D1 OS=Oryza nivara OX=4536 GN=psbA PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-20
Identity = 82/214 (38.32%), Postives = 93/214 (43.46%), Query Frame = 0


Query: 14  RPWIAVAYSAPVAAATAGFLIYPIGQGSFSDG---------------------AQHP--- 73
           RPWIAVAYSAPVAAATA FLIYPIGQGSFSDG                       HP   
Sbjct: 140 RPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHM 199

Query: 74  ------------------------------------------------------------ 128
                                                                       
Sbjct: 200 LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 259

[Close]

BLAST of CmoCh12G007840 vs. ExPASy Swiss-Prot
Match: P0C432 (Photosystem II protein D1 OS=Oryza sativa OX=4530 GN=psbA PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-20
Identity = 82/214 (38.32%), Postives = 93/214 (43.46%), Query Frame = 0


Query: 14  RPWIAVAYSAPVAAATAGFLIYPIGQGSFSDG---------------------AQHP--- 73
           RPWIAVAYSAPVAAATA FLIYPIGQGSFSDG                       HP   
Sbjct: 140 RPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHM 199

Query: 74  ------------------------------------------------------------ 128
                                                                       
Sbjct: 200 LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 259

[Close]

BLAST of CmoCh12G007840 vs. ExPASy Swiss-Prot
Match: P0C433 (Photosystem II protein D1 OS=Oryza sativa subsp. indica OX=39946 GN=psbA PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-20
Identity = 82/214 (38.32%), Postives = 93/214 (43.46%), Query Frame = 0


Query: 14  RPWIAVAYSAPVAAATAGFLIYPIGQGSFSDG---------------------AQHP--- 73
           RPWIAVAYSAPVAAATA FLIYPIGQGSFSDG                       HP   
Sbjct: 140 RPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHM 199

Query: 74  ------------------------------------------------------------ 128
                                                                       
Sbjct: 200 LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 259

[Close]

BLAST of CmoCh12G007840 vs. ExPASy TrEMBL
Match: A0A5J5S5A0 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D03G091900v1 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 6.0e-22
Identity = 78/148 (52.70%), Postives = 89/148 (60.14%), Query Frame = 0


Query: 14  RPWIAVAYSAPVAAATAGFLIYPIGQGSFSDG-------------AQH--------PYAP 73
           RPWIAVAYSA VAAATA FLIYPIGQGS SDG             A H         YA 
Sbjct: 67  RPWIAVAYSALVAAATAVFLIYPIGQGSCSDGYRFDQEEETYNIVAAHGYFGRLIFQYAS 126

Query: 74  ISHIRS------SWCIGLAPYSALCMH-YAFQLKWFQFQPIRSVVDSQGR-------ILN 127
            ++ RS      +W +    ++AL +   AF L  F F   +SVVDSQGR       I+N
Sbjct: 127 FNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFN--QSVVDSQGRVINTWADIIN 186

[Close]

BLAST of CmoCh12G007840 vs. ExPASy TrEMBL
Match: A0A5N6NXY2 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_16300 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 7.8e-22
Identity = 74/142 (52.11%), Postives = 82/142 (57.75%), Query Frame = 0


Query: 14  RPWIAVAYSAPVAAATAGFLIYPIGQGSFSDGAQHPYAPISHIRSSWCIGL--------- 73
           RPWIAVAYSAPVAAATA FLIYPIGQGSFSDG      P+        + L         
Sbjct: 103 RPWIAVAYSAPVAAATAVFLIYPIGQGSFSDG-----MPLGISGKPQKMNLLMKVTDSVK 162

Query: 74  --APYSALCMH-----------YAFQLKWFQFQPIRSVVDSQGR-------ILNRANLGM 127
               Y+ +  H            AF L  F F   +SVVDSQGR       I+NRANL M
Sbjct: 163 KKKTYNIVAAHGIWFTALGISTMAFNLNGFNFN--QSVVDSQGRVINTWADIINRANLAM 222

[Close]

BLAST of CmoCh12G007840 vs. ExPASy TrEMBL
Match: A0A1R3KZE5 (Photosynthetic reaction centre, L/M OS=Corchorus olitorius OX=93759 GN=COLO4_03170 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.0e-21
Identity = 65/123 (52.85%), Postives = 78/123 (63.41%), Query Frame = 0


Query: 14  RPWIAVAYSAPVAAATAGFLIYPIGQGSFSD----GAQHPYAPISHIRSSWCIGLAPYSA 73
           RPWIAVAYSAPVAAATA FLIYPIGQGSFSD    G    +  +   ++   I + P+  
Sbjct: 106 RPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHM 165

Query: 74  LCMHYAFQ------LKWFQFQPIRSVVDSQGRILNRANLGMEVMHERDAHNFPLDLAALE 127
           L +   F         WF       V+++   I+NRANLGMEVMHER+AHNFPLDLAA+E
Sbjct: 166 LGVAGVFGGSLFSCYAWFLVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAIE 225

[Close]

BLAST of CmoCh12G007840 vs. ExPASy TrEMBL
Match: M8C7Y2 (32 kDa thylakoid membrane protein OS=Aegilops tauschii OX=37682 GN=F775_29963 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 6.6e-21
Identity = 85/190 (44.74%), Postives = 95/190 (50.00%), Query Frame = 0


Query: 3   GGRVGTEFTYG-RPWIAVAYSAPVAAATAGFLIYPIGQGSFSDG---------------- 62
           G   G  F  G RPWIAVAYSAPVAAATA FLIYPIGQGSFSDG                
Sbjct: 128 GREWGLSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQ 187

Query: 63  -----AQHPYAPI---------------------SHIRSS---------WCIGL--APYS 122
                  HP+  +                     S IR +         +  G     Y+
Sbjct: 188 AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYN 247

Query: 123 ALCMH----YAFQLKWFQFQPIRSVVDSQGR-------ILNRANLGMEVMHERDAHNFPL 128
            +  H     AF L  F F   +SVVDSQGR       I+NRANLGMEVMHER+AHNFPL
Sbjct: 248 IVAAHGISTMAFNLNGFNFN--QSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPL 307

[Close]

BLAST of CmoCh12G007840 vs. ExPASy TrEMBL
Match: A0A803MZP1 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 8.7e-21
Identity = 77/172 (44.77%), Postives = 90/172 (52.33%), Query Frame = 0


Query: 14  RPWIAVAYSAPVAAATAGFLIYPIGQGSFSDGAQH------------------------- 73
           RPWI+VAYSAPVAAATA FLIYPIGQGSFSD + H                         
Sbjct: 131 RPWISVAYSAPVAAATAVFLIYPIGQGSFSDVSMHGSLVTSSFIRETTENESANEGYRFG 190

Query: 74  --------------------PYAPISHIRS------SWCIGLAPYSALCMH-YAFQLKWF 127
                                YA  ++ RS      +W +    ++AL +   AF L  F
Sbjct: 191 QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGF 250

[Close]

BLAST of CmoCh12G007840 vs. TAIR 10
Match: ATCG00020.1 (photosystem II reaction center protein A )

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-20
Identity = 80/213 (37.56%), Postives = 91/213 (42.72%), Query Frame = 0


Query: 14  RPWIAVAYSAPVAAATAGFLIYPIGQGSFSDG---------------------AQHP--- 73
           RPWIAVAYSAPVAAATA FLIYPIGQGSFSDG                       HP   
Sbjct: 140 RPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHM 199

Query: 74  ------------------------------------------------------------ 127
                                                                       
Sbjct: 200 LGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLI 259

The following BLAST results are available for this feature:

BLAST of CmoCh12G007840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A1E9Y8	1.1e-20	38.79	Photosystem II protein D1 OS=Agrostis stolonifera OX=63632 GN=psbA PE=3 SV=1	[more]
A8Y9F0	1.9e-20	38.32	Photosystem II protein D1 OS=Lolium perenne OX=4522 GN=psbA PE=3 SV=1	[more]
Q6ENJ7	1.9e-20	38.32	Photosystem II protein D1 OS=Oryza nivara OX=4536 GN=psbA PE=3 SV=1	[more]
P0C432	1.9e-20	38.32	Photosystem II protein D1 OS=Oryza sativa OX=4530 GN=psbA PE=3 SV=1	[more]
P0C433	1.9e-20	38.32	Photosystem II protein D1 OS=Oryza sativa subsp. indica OX=39946 GN=psbA PE=3 SV...	[more]

BLAST of CmoCh12G007840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5J5S5A0	6.0e-22	52.70	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D03G091900v1 PE...	[more]
A0A5N6NXY2	7.8e-22	52.11	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_16300 PE=3 SV=1	[more]
A0A1R3KZE5	3.0e-21	52.85	Photosynthetic reaction centre, L/M OS=Corchorus olitorius OX=93759 GN=COLO4_031...	[more]
M8C7Y2	6.6e-21	44.74	32 kDa thylakoid membrane protein OS=Aegilops tauschii OX=37682 GN=F775_29963 PE...	[more]
A0A803MZP1	8.7e-21	44.77	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]

BLAST of CmoCh12G007840 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00020.1	1.5e-20	37.56	photosystem II reaction center protein A	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036854	Photosystem II protein D1/D2 superfamily	GENE3D	1.20.85.10		coord: 11..66 e-value: 3.0E-6 score: 29.0
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 14..124
IPR000484	Photosynthetic reaction centre, L/M	PFAM	PF00124	Photo_RC	coord: 14..48 e-value: 1.2E-8 score: 34.5
IPR000484	Photosynthetic reaction centre, L/M	PANTHER	PTHR33149	PHOTOSYSTEM II PROTEIN D1	coord: 14..46 coord: 66..126
None	No IPR available	PANTHER	PTHR33149:SF33	PHOTOSYSTEM II PROTEIN D1	coord: 14..46
None	No IPR available	PANTHER	PTHR33149:SF33	PHOTOSYSTEM II PROTEIN D1	coord: 66..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G007840.1	CmoCh12G007840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0005622	intracellular anatomical structure
cellular_component	GO:0016020	membrane
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity