CmoCh12G006050 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G006050
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	NADH-ubiquinone oxidoreductase chain 5
Location	Cmo_Chr12: 3775333 .. 3778471 (+)
RNA-Seq Expression	CmoCh12G006050
Synteny	CmoCh12G006050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGGAAGAACAACAAATAAGAGAAGGACCGAATTCAACGCTCCTGCTCTCTCTCTTTCTCTCAATTCCATTTCTCAATTCCTCCTTCACTTCGTCTCTCACTGTTTCAAATCCTCCGATCTCCACCGTCGCCCTACCTCCCCTGAGGCGAAGGAAACAAGGTCTCGGGGCGCTGCCATGATTACTCGGTCGAATCTGGTTGAGCAGTTGAGAGAATACCAGATTCGATCGAAGCACGAGTGGGCTTCCGTCTCCTTATTTTCATCTGCCTCCAACATTACTTCTTCCAGGTATTTCCAACCCCAATCTGTTAATTTCAACCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCCCCCCCCCCCCCTTTCGTTTCTGCTTTCGATTTCCTCGTCTCCCAGATTCGTAATTCTTTCTTTTATACCTACGTTTCTGATTCTGAGATTTTGATTCTTGGGATTCTGAATTTATGGCGTTGGTTTTGTTTTGCTTTGAATTGGGCTGGTTATGTTCGATGAAATAGGGTTTTGTTCTTTAAACGCTGAATTCATGATGGGATTTGGGATCATTGCAGACGTTGGCAAATTCTGTCCCCAATTTCTTTTATTTTGTATGAATTTATGGTGGTTTCTTCTCTCGATAAGCTTTGGAATTTTGTAAGATCGTTTTGGAAATGTTGGTTTCGTTTGTTCTGGGCAGTAATTTTAGGGAATAATAGTGTTCATGTGGAATTCGGTACTTGAAATGGGACTCTCGTAGATAAATTTCATCACAAGATGCATCATGTCATCCTCTGGATGTCAAGATAATTGCTTTGTCCAACGATGTGCTATGGTAATTGTTCAATTGAAGTTCCTTTATGCAAGTAATTAATTTTTCGTGAGCTTGGTCATGAGTGCCTTCAGCCATAGCCTGTAAATTTCTTGTACTCCTAGCTTAGCATCAAATCAGAAGTTCATGTTATGTAACTGGATATTGACAGATACTCCTGACTTCCGAAATAATTAAAATTATGACTATGAGTTTCTTTTGACAGAGCTCTGTCTTTATATCTTGCATTGATTGCTAATTGCGTTGTTCATGATGAAGGAATGTTGAAAATTGGGCCAAAATTCTCAGATTCTTCTATTAGGATTTCTGGTTCCTAAAAAGAAATCTATTGTATCTTAGTTTTAGCATCCAATTATCTATCTCTCGGGAGTAAAGTTCTAAGTTTCAAATTTCATGATCTTGGATATACGTTTTCTTGTACATTATTGTTAATTTGTCTAGCGAAAATTTGTAGACAAACTCTTGGTATTTTCTTTGGACATTGTTAATCCAACACCATAAAAATCTTGATATATTTTATCTAAGTTCGTAAAGAAAATGTTATGTCAGTGCATAAAATTGGACTTAGTTTGCAGTTTTTCTTTGAGTTAGTTGGTGATTGATTAAGAAGAATTTTCACTCATACCAACTGATGTATCTTTTCATCTTATGTACGATCTATTCAAATAGATATCCACAGGGTGGTCTGTGTGAGTGTCCATTACAACTTTTGTATTGTTCGGTTTATGTACGTTATGTTGGGATTCACTCTCCTGTTAAACGAACATGAATTAGATCCTAATTGTGGTTTATTATGTACGCACGATTTGTCATTTCTGATGATATGCATTTTGGTTCGTCTATTTGTTTATGCAGGGTGGATGTTGTCATTTTTGTAATATGGGAACTCATTATTCTAGCGTTCTTGGTCTTTTCGGCAGTGTCTTTATATTTTCGACATATGCAATTGGCTTCTATTTTAGTGTGCATTACGATGCTGTTACTTATATGCATGAAAGTTACCAAGCAAGTGAGATTGGCTAGGAAGAAGAAAAGAAGGATGCTTCTTCCATTGTCGATGTGAAAAGGTAACAACAGTGCAGAGACATACTAAAGTTTTATATGTTGTTTCCAAATGTCCCAAATTATGTTCACAAAAGTTAGATTTGGTCCTAAATTTGTTCTATTGGGATCTGTAATGAGCAGGAAAGCAGATTATTTGAAAAATGGAATGAGATATGGGTGAGTTGTTTAGGAGTTTGGCTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC

mRNA sequence

ATGAGGGGAAGAACAACAAATAAGAGAAGGACCGAATTCAACGCTCCTGCTCTCTCTCTTTCTCTCAATTCCATTTCTCAATTCCTCCTTCACTTCGTCTCTCACTGTTTCAAATCCTCCGATCTCCACCGTCGCCCTACCTCCCCTGAGGCGAAGGAAACAAGGTCTCGGGGCGCTGCCATGATTACTCGGTCGAATCTGGTTGAGCAGTTGAGAGAATACCAGATTCGATCGAAGCACGAGTGGGCTTCCGTCTCCTTATTTTCATCTGCCTCCAACATTACTTCTTCCAGGGTGGATGTTGTCATTTTTGTAATATGGGAACTCATTATTCTAGCGTTCTTGGTCTTTTCGGCAGTGTCTTTATATTTTCGACATATGCAATTGGCTTCTATTTTAGTGTGCATTACGATGCTGTTACTTATATGCATGAAAGTTACCAAGCAAGTGAGATTGGCTAGGAAGAAGAAAAGAAGGATGCTTCTTCCATTGTCGATGTGAAAAGGTAACAACAGTGCAGAGACATACTAAAGTTTTATATGTTGTTTCCAAATGTCCCAAATTATGTTCACAAAAGTTAGATTTGGTCCTAAATTTGTTCTATTGGGATCTGTAATGAGCAGGAAAGCAGATTATTTGAAAAATGGAATGAGATATGGGTGAGTTGTTTAGGAGTTTGGCTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC

Coding sequence (CDS)

ATGAGGGGAAGAACAACAAATAAGAGAAGGACCGAATTCAACGCTCCTGCTCTCTCTCTTTCTCTCAATTCCATTTCTCAATTCCTCCTTCACTTCGTCTCTCACTGTTTCAAATCCTCCGATCTCCACCGTCGCCCTACCTCCCCTGAGGCGAAGGAAACAAGGTCTCGGGGCGCTGCCATGATTACTCGGTCGAATCTGGTTGAGCAGTTGAGAGAATACCAGATTCGATCGAAGCACGAGTGGGCTTCCGTCTCCTTATTTTCATCTGCCTCCAACATTACTTCTTCCAGGGTGGATGTTGTCATTTTTGTAATATGGGAACTCATTATTCTAGCGTTCTTGGTCTTTTCGGCAGTGTCTTTATATTTTCGACATATGCAATTGGCTTCTATTTTAGTGTGCATTACGATGCTGTTACTTATATGCATGAAAGTTACCAAGCAAGTGAGATTGGCTAGGAAGAAGAAAAGAAGGATGCTTCTTCCATTGTCGATGTGA

Protein sequence

MRGRTTNKRRTEFNAPALSLSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRGAAMITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVFSAVSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM

Homology

[Close]

BLAST of CmoCh12G006050 vs. ExPASy TrEMBL
Match: A0A6J1GHS6 (uncharacterized protein LOC111454282 OS=Cucurbita moschata OX=3662 GN=LOC111454282 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.6e-78
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MRGRTTNKRRTEFNAPALSLSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRGAA 60
           MRGRTTNKRRTEFNAPALSLSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRGAA
Sbjct: 1   MRGRTTNKRRTEFNAPALSLSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRGAA 60

Query: 61  MITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVFSAV 120
           MITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVFSAV
Sbjct: 61  MITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVFSAV 120

Query: 121 SLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM 167
           SLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM
Sbjct: 121 SLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM 166

[Close]

BLAST of CmoCh12G006050 vs. ExPASy TrEMBL
Match: A0A1S3CMK7 (uncharacterized protein LOC103502637 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502637 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.3e-53
Identity = 127/149 (85.23%), Postives = 135/149 (90.60%), Query Frame = 0


Query: 20  LSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRG--AAMITRSNLVEQLREYQIR 79
           LSLNSISQFL+ F+  CF+SS LH   +S EAK+ RSRG  +AMITRSNLVEQLREYQIR
Sbjct: 2   LSLNSISQFLVRFLCRCFRSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQIR 61

Query: 80  SKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVFSAVSLYFRHMQLASILVCIT 139
           SKHEWASVS FSS SNITSSRVDVVIFVIWELIIL+FLVFSAVSLYFRHMQLA ILVCIT
Sbjct: 62  SKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCIT 121

Query: 140 MLLLICMKVTKQVRLARKKKRRMLLPLSM 167
           MLLL+CMKVTKQVRLARKKKRRMLLPLSM
Sbjct: 122 MLLLLCMKVTKQVRLARKKKRRMLLPLSM 150

[Close]

BLAST of CmoCh12G006050 vs. ExPASy TrEMBL
Match: A0A0A0KIH9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G358690 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.9e-53
Identity = 127/149 (85.23%), Postives = 134/149 (89.93%), Query Frame = 0


Query: 20  LSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRG--AAMITRSNLVEQLREYQIR 79
           LSLNSISQFL+ F+  CF SS LH   +S EAK+ RSRG  +AMITRSNLVEQLREYQIR
Sbjct: 2   LSLNSISQFLVSFLCRCFHSSILHLPSSSLEAKKRRSRGSASAMITRSNLVEQLREYQIR 61

Query: 80  SKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVFSAVSLYFRHMQLASILVCIT 139
           SKHEWASVS FSS SNITSSRVDVVIFVIWELIIL+FLVFSAVSLYFRHMQLA ILVCIT
Sbjct: 62  SKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLAFILVCIT 121

Query: 140 MLLLICMKVTKQVRLARKKKRRMLLPLSM 167
           MLLL+CMKVTKQVRLARKKKRRMLLPLSM
Sbjct: 122 MLLLLCMKVTKQVRLARKKKRRMLLPLSM 150

[Close]

BLAST of CmoCh12G006050 vs. ExPASy TrEMBL
Match: A0A6J1G568 (uncharacterized protein LOC111450786 OS=Cucurbita moschata OX=3662 GN=LOC111450786 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 3.1e-50
Identity = 118/147 (80.27%), Postives = 129/147 (87.76%), Query Frame = 0


Query: 20  LSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRGAAMITRSNLVEQLREYQIRSK 79
           LSLNSISQFL+ F+  C K   LHRRP    +++  SRGAAMITRSNLVEQLREYQIRSK
Sbjct: 2   LSLNSISQFLVPFICGCVKFPILHRRP----SEKPTSRGAAMITRSNLVEQLREYQIRSK 61

Query: 80  HEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVFSAVSLYFRHMQLASILVCITML 139
           H+WAS S FSS SNITSSRVDVVIFVIWELIIL+FLVFSAVSLYFRHMQL  +LVCITML
Sbjct: 62  HDWASASFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFVLVCITML 121

Query: 140 LLICMKVTKQVRLARKKKRRMLLPLSM 167
           L++CMKVTKQ+RLARKKKRRMLLPLSM
Sbjct: 122 LIVCMKVTKQMRLARKKKRRMLLPLSM 144

[Close]

BLAST of CmoCh12G006050 vs. ExPASy TrEMBL
Match: A0A6J1KBR2 (uncharacterized protein LOC111494024 OS=Cucurbita maxima OX=3661 GN=LOC111494024 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.2e-49
Identity = 116/147 (78.91%), Postives = 128/147 (87.07%), Query Frame = 0


Query: 20  LSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRGAAMITRSNLVEQLREYQIRSK 79
           LSLNSISQFL+ F+  C K    HRRP    +++  SRGAAMITRSNLVEQLREYQIRSK
Sbjct: 2   LSLNSISQFLVPFICGCVKFPIFHRRP----SEKPTSRGAAMITRSNLVEQLREYQIRSK 61

Query: 80  HEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVFSAVSLYFRHMQLASILVCITML 139
           H+WAS S FSS SNITSSRVDVVIFVIWELIIL+FLVFSAVSLYFRHMQL  +L+CITML
Sbjct: 62  HDWASASFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFVLICITML 121

Query: 140 LLICMKVTKQVRLARKKKRRMLLPLSM 167
           L++CMKVTKQ+RLARKKKRRMLLPLSM
Sbjct: 122 LIVCMKVTKQMRLARKKKRRMLLPLSM 144

[Close]

BLAST of CmoCh12G006050 vs. TAIR 10
Match: AT1G20460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76185.1); Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 166.4 bits (420), Expect = 2.0e-41
Identity = 91/106 (85.85%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 61  MITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVFSAV 120
           MITRSNL EQLREYQIRSKH+WASVS FSS SN +SSRVDVV+FVIWEL+ILAF VFSAV
Sbjct: 1   MITRSNLAEQLREYQIRSKHDWASVSFFSSTSNFSSSRVDVVVFVIWELVILAFFVFSAV 60

Query: 121 SLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM 167
           SLYF+ +QLA ILVC+T+LLLICMKVTKQVRLARKKKRRMLLPLSM
Sbjct: 61  SLYFKRLQLAFILVCVTLLLLICMKVTKQVRLARKKKRRMLLPLSM 106

[Close]

BLAST of CmoCh12G006050 vs. TAIR 10
Match: AT1G76185.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20460.1); Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 159.5 bits (402), Expect = 2.4e-39
Identity = 86/106 (81.13%), Postives = 98/106 (92.45%), Query Frame = 0


Query: 61  MITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVFSAV 120
           MITRSNL EQLREYQIRSKH+WASVS FSS SN +SSRVDVV+FVIWEL++LA +VFSAV
Sbjct: 1   MITRSNLAEQLREYQIRSKHDWASVSFFSSTSNFSSSRVDVVVFVIWELVMLALVVFSAV 60

Query: 121 SLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM 167
           SLYFR +QLA IL+C+T+LLL+CMK+TKQVR ARKKKRRMLLPLSM
Sbjct: 61  SLYFRRLQLAFILLCVTLLLLLCMKITKQVRHARKKKRRMLLPLSM 106

The following BLAST results are available for this feature:

BLAST of CmoCh12G006050 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh12G006050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GHS6	1.6e-78	100.00	uncharacterized protein LOC111454282 OS=Cucurbita moschata OX=3662 GN=LOC1114542...	[more]
A0A1S3CMK7	1.3e-53	85.23	uncharacterized protein LOC103502637 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KIH9	3.9e-53	85.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G358690 PE=4 SV=1	[more]
A0A6J1G568	3.1e-50	80.27	uncharacterized protein LOC111450786 OS=Cucurbita moschata OX=3662 GN=LOC1114507...	[more]
A0A6J1KBR2	1.2e-49	78.91	uncharacterized protein LOC111494024 OS=Cucurbita maxima OX=3661 GN=LOC111494024...	[more]

BLAST of CmoCh12G006050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20460.1	2.0e-41	85.85	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G76185.1	2.4e-39	81.13	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34936	EXPRESSED PROTEIN	coord: 61..166
None	No IPR available	PANTHER	PTHR34936:SF10	SUBFAMILY NOT NAMED	coord: 61..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G006050.1	CmoCh12G006050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane