CmoCh12G005630 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G005630
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr12: 3484486 .. 3486473 (+)
RNA-Seq Expression	CmoCh12G005630
Synteny	CmoCh12G005630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGAGAGACTAACCTTGTCCGGTGGGCCCTTAGCACCGCCAATGAGAATTTCCGCACTGTATTTGATGAATCAAAGGTGAGAAACAAGAGATATGATATTTTTGAGCCTGAAGGATATAAATGAAGTTGAAGAGATTTTGGCTATAAGGAATTACTTGCAGGATTCCTTTATTGACAAAATTGAGGATCCTCTCCTACCAATTACGCGTCCCATCATTCCAGGGGGAACATCTAAGACTGAAAGAATTTCTTCTTCAGGAGCATTGCCCTCTACTACAAGGTTATCTGCAAGAACATGTTAGACCAATATAAATAATCAATTGACACCATGCTAGACCAATATTTATGAAAGTTTTATTAAACTATGAGGGATGAAATTCCAACTTTTAAAATCACGAGGACTAAGTTCTATATGTAGACTAAATTTATAATCTAACCTAAATATTTTACAAATTTCTAACTATTATTGAAACATATTCTTTGGTTTTCAACTGTAAGGTCCATAGACTACTTTTCATTTGATGCAATTAAAACCTGGAGTATTTATGAAGGTTTTATTCCACCATTGGAACAAATTCTAAGCTTTAAAATCATAGGACTAAATTCTAACTTTCTCAAAGAGACCACATTTGTAGTTCAACCAAACATTTATAAATTTAAACATATTTGAAGTTCAGCAGATAGTTGGTGAGCCAACATTTCTCACATTGCTAAATAGGTTTTTAAGATTTTGAACCCAATATCAATTGTGAGATCATGACATAACAGAAGGCAGACAATATTGAAACATCACATAGAAAATTATTATGATGAAACGGATTAAAAAACTGTACAAGTTGAAAAGTTTGCAATGACAGTTAAAATCAACTTGACATACCAGAAGGTTCAATTTGCCATTATTCTCATTATATAGACTATGCATGGTAAGATGTGTTCTAAAAGAAAACCTGGAACAGAAGGGAGAGGAGGCCAGTCAGTATAATCATTATCACTGATGCAAAAACACCGACAGTACAAAGCACCACGCACTGCAAGGTACCACAGCGATTGTTGATTCAATTTCTCCATCATCTTGTGGTAGATGTAAAGAAGAAAGCGTACATCATCAGCAGCTGCACGGACCATCAGTTCAGACAATGGTCTATATGTCCAAAACAGAGGGTCCTGTAAAATATAAATTTAGAATTAAGGATTTATGCAAAGATAGGTATAAACTTGTGGAACAATTGATATCTCCAGTTTCCTGAAATGTAATGTAAAGAAACTACTTTAAGTTTAAAAGCATTTTATCAATATGACCAATCTTTAGGGAATTTCGTTTGTGTTTATGCCAAAAATCTGACAGCAAGTTTTCTGTTTTTAATGCCAACGTACACAGGTATAACATTATTCTAGATATAGGTTCCTGCAATTTATGATGGCCAAGTGGATGTATAGCATTCTCATAAGGGTCCTGCAATTTTTATTTTTTAATATGCACTAGATTTTATGTATTAAAAAACGTGCTGAAAATAATTGACAATTGTTTATAATATTCCATAAAATAATAATAATAATGCCAACAAAAAAAAAAAAAAAAAAAAAAAAAAGACCAGTATATTAATAATCCATAAAAGAAGACAATTGTTTATAGTATTCCATAAAATAATAATTGACTACAAATTTGTTATTTCTGAATAATAATTCTAAAATCATATATCTCATTCTAAGCACAATGTTAATATTATGGTCATCATAATATTATACCTGTATATTAATAATCTTAATTTCCAAGTCATTTTCGTCGACTAAAGACCTGAAATGTCTATTATACTTGTGCTACTCCAAAAGAAGGATATTACATTTAGGAATTAAGCACATTTGACCTATAAAGCACCACATAACGGAAAACAATGCAAAATTTATAGAACCATAGAACTTCTTGCTAGGATTCAAAATTCTACACAGCAATACAGCAATGACCAAACTAACCTGCCTAAGTAG

mRNA sequence

ATGAGAAGAGAGACTAACCTTGTCCGGTGGGCCCTTAGCACCGCCAATGAGAATTTCCGCACTGTATTTGATGAATCAAAGGATTCCTTTATTGACAAAATTGAGGATCCTCTCCTACCAATTACGCGTCCCATCATTCCAGGGGGAACATCTAAGACTGAAAGAATTTCTTCTTCAGGAGCATTGCCCTCTACTACAAGATGTAAAGAAGAAAGCGTACATCATCAGCAGCTGCACGGACCATCAGTTCAGACAATGTTTCCTGAAATGGAATTTCGTTTGTGTTTATGCCAAAAATCTGACAGCAAGTTTTCTGTTTTTAATGCCAACGTACACAGAACCATAGAACTTCTTGCTAGGATTCAAAATTCTACACAGCAATACAGCAATGACCAAACTAACCTGCCTAAGTAG

Coding sequence (CDS)

ATGAGAAGAGAGACTAACCTTGTCCGGTGGGCCCTTAGCACCGCCAATGAGAATTTCCGCACTGTATTTGATGAATCAAAGGATTCCTTTATTGACAAAATTGAGGATCCTCTCCTACCAATTACGCGTCCCATCATTCCAGGGGGAACATCTAAGACTGAAAGAATTTCTTCTTCAGGAGCATTGCCCTCTACTACAAGATGTAAAGAAGAAAGCGTACATCATCAGCAGCTGCACGGACCATCAGTTCAGACAATGTTTCCTGAAATGGAATTTCGTTTGTGTTTATGCCAAAAATCTGACAGCAAGTTTTCTGTTTTTAATGCCAACGTACACAGAACCATAGAACTTCTTGCTAGGATTCAAAATTCTACACAGCAATACAGCAATGACCAAACTAACCTGCCTAAGTAG

Protein sequence

MRRETNLVRWALSTANENFRTVFDESKDSFIDKIEDPLLPITRPIIPGGTSKTERISSSGALPSTTRCKEESVHHQQLHGPSVQTMFPEMEFRLCLCQKSDSKFSVFNANVHRTIELLARIQNSTQQYSNDQTNLPK

Homology

[Close]

BLAST of CmoCh12G005630 vs. ExPASy TrEMBL
Match: B7FFK9 (Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-04
Identity = 27/39 (69.23%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 27 KDSFIDKIEDPLLPITRPIIPGGTSKTERISSSGALPST 66
          +DS ID IE P  PI  PI PGGTS+TERISSSG  PST
Sbjct: 20 QDSLIDIIEAPFFPIMHPIFPGGTSRTERISSSGPFPST 58

[Close]

BLAST of CmoCh12G005630 vs. ExPASy TrEMBL
Match: A0A0A9EYN0 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.7e-04
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 27 KDSFIDKIEDPLLPITRPIIPGGTSKTERISSSG 61
          +DSF   I+DP LPITRPI PGGTSKT+RIS+SG
Sbjct: 32 QDSFTAFIDDPFLPITRPIFPGGTSKTDRISTSG 65

The following BLAST results are available for this feature:

BLAST of CmoCh12G005630 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh12G005630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
B7FFK9	1.2e-04	69.23	Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1	[more]
A0A0A9EYN0	4.7e-04	73.53	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]

BLAST of CmoCh12G005630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G005630.1	CmoCh12G005630.1	mRNA