CmoCh12G003500 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G003500
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Rac-like GTP-binding protein
Location	Cmo_Chr12: 2165845 .. 2168957 (-)
RNA-Seq Expression	CmoCh12G003500
Synteny	CmoCh12G003500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTATGTGTGGTAGAAGAGGAGGCGCTATAGGTGGCAGAAGGTGAGCAAGGCCGGCGAGCGCTTCAACCGCGATTCATTTCCTTTCCCCTTTCAAAATAACCCTTCTTCGCTTCTCTCTCTTTCTCTCTTTCTCTCTGTTCCTGCAATTCGGGATCTCTCCACGCTGCATTTTCCATTTCCCCTTTTCAAGAATTCAGATCCTACGTTCTCTTGATTCCAAACTCTTTCATGGAATACTGTTGATTTTCTCACTGTCTCGTTCTTTCTCTTCCGTTCCGTTCCGTTCTGTTCTGTCCTGTTTGGTCTCATGAACAATCGATTCTGAGCAACCAACCCACTGTAGTTTTCGGGTTACAGATCTGGTGCTTCGAGATGAGTGCGTCCAGGTTTATAAAGTGCGTTACGGTGGGCGATGGTGCTGTGGGTAAAACCTGTATGTTGATTTCTTATACGAGTAACACCTTTCCCACGGTGAGTTTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTATGAGATCATTCTCGCTTGCTTGTTGTTTTTTTGGTTTTGATGGATCTTGTGGAAGAACCATGGGATGAAGGAAATAACAATGTAGGATGCTTAAAGAGGGAATGTTCTTGATAATAGTTCCTTTGGCTGAGTTTATTTCATTGCGTTTTCTGATTCTTCATGATATGATTTCAATGGAGCAAAAAGAAGGATTGAATTCCTGTATTTCTTTTGTGAAGATTATTTTTATTTCCTGTTTATTCTTTTTAATGGCATTTTGAAGAGATTGGAAGACGATAGAACATGATTTTGAATATGAAAGTTGTTTGGTGTGTTCTTTCTTACCCGTGGTTGGAACTTATCGGGGATGAATTTGTTCTCGAGATGTGCGCTTTTGGAAATAATGCACCCGTTGAAATCATGCACTAGCAGACAATCTCCATCAATTGGAATTCTCTGACTGTCCTCGAACATAGCAATTTGTTCTTATCTTCTTTTGACCTTAATTTTGAACTTGATTTTCCCCCTTTCTCTCTTTTAGATGCTAAATCATATGGTATCTGGGGTTCTGAGTTCTTAATCGATGGTTTTCTTTACATTTGCGTAGTTTTGAAGTGTATATTATATCAAAACATTGACCAAGAACTCATTGAGCTTCAGAATTTTCATAGTTTTTACTCCATGAATCTTGATCTTTTGTAATATCCCATTAGCACTTTCATTTCTAATTTGCAGGACTACGTGCCCACCGTTTTTGACAATTTCAGTGCCAATGTGGTGGTTGATGGAAACACTGTCAACTTAGGATTATGGGATACTGCTGGTAACAACATGATGAGAGTTCTAGTTTCTCCACCCACCCAATAACCAAGTTCATCAAATTTTTAATGCATGGAAGGGATTTAAATTTATTGTTTTGAACAGGTCAAGAGGATTACAATAGATTAAGACCACTGAGTTATCGAGGTGCTGATGTTTTTATTCTTGCTTTCTCTCTCATAAGCAAGGCCAGCTATGAAAATGTTGCTAAGAAGGTAGCACGTTATGGATGACGTCAATTGTTAGCCTAATTAGCTGGATATGAATTGTTTATGCAAAAATTATGCCTTTGCTGATGAGATCTTTTGCATTTTCCCACAGTGGATTCCTGAGTTGAGACATTATGCACCTGGTGTTCCAATAGTTCTTGTTGGAACTAAACTTGGTAAGGATTATTTATTCATTTTTGAAGTTCAGTATTTATGTGAGATCCCACATCGGTTTGGGAGGAGAACGAAACATTCTTTACAAGGGTGTGGAAACCTCTCCATCGCAGACACGTTTCAAAGAAGACAATATCTGCTAATGGTGGGTTTGGACTGTTACAATTTAATTTAGCGATTGAGCAGAGGGATATATTTGGATACGAAGAACTTGGGCGTGGGCTGTTACACATCCATCATTGGTAGCTTTTTTTTGCACCGAGTGGAATGTGTGCACCCATACACAAGTTCTTTGTACATCTGCCAAAGGTTTCGATTATTTTTGTGTTGTCCATAAGTTTTTTTTAGCATAACTTAGTGATTAAGATATTTCTACTTCTCTCAAGAAAGAGAAGTCGTAGGTTTAAATCTCTTGGCTCTACTTCTGATGCGATATTTTGATAGAAGAAAATGGGAATAACGGTCTATGATTTTGTTCTTCTCGCGTGAGGATATTTTTCGCAATTTTGAAAACAAGAACAATTCTCACTGTAGTTTCGTTCTCAGATCTTCGGGATGACAAGCAATTCTTTGTAGACCACCCGGGTGCGGTGCCAATTTCTACTGTTCAGGTAAATAACTTGATATCTACCATTAGAAATCTTATTCTTTTCTTGCTTTTTAGAACCCCTTTTGACTGTTGCAATCTTACTTGGTTTAACTCTATTGGTGACCTTTTTTTTTTTCGTATGTGGGACATAGACTATTTTGGGAAAGTAGCTTGATTGGTTCGGTGGTGTATCGATAATTTTTCTGTTATTGAATGTAGGGAGAGGAGTTGACAAAAACAATTGGAGCCCCGGCATACATCGAATGTAGTTCAAAAACTCAGCAGGCATGACATTCATTCTGTGTTATTCGTCTGTGAGCATATTTTGTGAAGGAGTTGGTTTGATGGTTTGTTGGTTTGTTTGTTGCAGAATGTGAAAGCAGTGTTTGATGCAGCCATTAAAGTGGTGCTCCAGCCGCCCAAGTCAAAGAAGAAGAAGAAGAAGTCACAGAGTGTCTGTTCCATCTTATGATCGAAGAAGAAGAAGAACTGAACGAACCGACGACACTTCATAATGTACTCGCCTTTTTCTCAGCATATCTTTAATCCATGTCATTCCAAGGAAGCAGCGGGCGCGAATGATGGATCGTATCGTACGTATCGTATACGGCCCCAGGCTGACATTCCAAGATGCAAATACAACATATTTTGCAATCTGTTTGTTAGTAATGACCAACATTGCTAACCCCAATTTGTCTGTTTGAATTGTTCATGTATTCATGAGATACCTAAAAGAACTGCTCCCTGGGCATGAACATGCTTTGGTACTTAGTAACATATATTCTCTAATTCCATTCACATCCTCATATTTATGACTTCC

mRNA sequence

GGTATGTGTGGTAGAAGAGGAGGCGCTATAGGTGGCAGAAGGTGAGCAAGGCCGGCGAGCGCTTCAACCGCGATTCATTTCCTTTCCCCTTTCAAAATAACCCTTCTTCGCTTCTCTCTCTTTCTCTCTTTCTCTCTGTTCCTGCAATTCGGGATCTCTCCACGCTGCATTTTCCATTTCCCCTTTTCAAGAATTCAGATCCTACGTTCTCTTGATTCCAAACTCTTTCATGGAATACTGTTGATTTTCTCACTGTCTCGTTCTTTCTCTTCCGTTCCGTTCCGTTCTGTTCTGTCCTGTTTGGTCTCATGAACAATCGATTCTGAGCAACCAACCCACTGTAGTTTTCGGGTTACAGATCTGGTGCTTCGAGATGAGTGCGTCCAGGTTTATAAAGTGCGTTACGGTGGGCGATGGTGCTGTGGGTAAAACCTGTATGTTGATTTCTTATACGAGTAACACCTTTCCCACGGACTACGTGCCCACCGTTTTTGACAATTTCAGTGCCAATGTGGTGGTTGATGGAAACACTGTCAACTTAGGATTATGGGATACTGCTGGTCAAGAGGATTACAATAGATTAAGACCACTGAGTTATCGAGGTGCTGATGTTTTTATTCTTGCTTTCTCTCTCATAAGCAAGGCCAGCTATGAAAATGTTGCTAAGAAGTGGATTCCTGAGTTGAGACATTATGCACCTGGTGTTCCAATAGTTCTTGTTGGAACTAAACTTGATCTTCGGGATGACAAGCAATTCTTTGTAGACCACCCGGGTGCGGTGCCAATTTCTACTGTTCAGGGAGAGGAGTTGACAAAAACAATTGGAGCCCCGGCATACATCGAATGTAGTTCAAAAACTCAGCAGAATGTGAAAGCAGTGTTTGATGCAGCCATTAAAGTGGTGCTCCAGCCGCCCAAGTCAAAGAAGAAGAAGAAGAAGTCACAGAGTGTCTGTTCCATCTTATGATCGAAGAAGAAGAAGAACTGAACGAACCGACGACACTTCATAATGTACTCGCCTTTTTCTCAGCATATCTTTAATCCATGTCATTCCAAGGAAGCAGCGGGCGCGAATGATGGATCGTATCGTACGTATCGTATACGGCCCCAGGCTGACATTCCAAGATGCAAATACAACATATTTTGCAATCTGTTTGTTAGTAATGACCAACATTGCTAACCCCAATTTGTCTGTTTGAATTGTTCATGTATTCATGAGATACCTAAAAGAACTGCTCCCTGGGCATGAACATGCTTTGGTACTTAGTAACATATATTCTCTAATTCCATTCACATCCTCATATTTATGACTTCC

Coding sequence (CDS)

ATGAGTGCGTCCAGGTTTATAAAGTGCGTTACGGTGGGCGATGGTGCTGTGGGTAAAACCTGTATGTTGATTTCTTATACGAGTAACACCTTTCCCACGGACTACGTGCCCACCGTTTTTGACAATTTCAGTGCCAATGTGGTGGTTGATGGAAACACTGTCAACTTAGGATTATGGGATACTGCTGGTCAAGAGGATTACAATAGATTAAGACCACTGAGTTATCGAGGTGCTGATGTTTTTATTCTTGCTTTCTCTCTCATAAGCAAGGCCAGCTATGAAAATGTTGCTAAGAAGTGGATTCCTGAGTTGAGACATTATGCACCTGGTGTTCCAATAGTTCTTGTTGGAACTAAACTTGATCTTCGGGATGACAAGCAATTCTTTGTAGACCACCCGGGTGCGGTGCCAATTTCTACTGTTCAGGGAGAGGAGTTGACAAAAACAATTGGAGCCCCGGCATACATCGAATGTAGTTCAAAAACTCAGCAGAATGTGAAAGCAGTGTTTGATGCAGCCATTAAAGTGGTGCTCCAGCCGCCCAAGTCAAAGAAGAAGAAGAAGAAGTCACAGAGTGTCTGTTCCATCTTATGA

Protein sequence

MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKLDLRDDKQFFVDHPGAVPISTVQGEELTKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKSKKKKKKSQSVCSIL

Homology

[Close]

BLAST of CmoCh12G003500 vs. ExPASy Swiss-Prot
Match: Q6EP31 (Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=RAC5 PE=2 SV=2)

HSP 1 Score: 374.8 bits (961), Expect = 6.1e-103
Identity = 183/197 (92.89%), Postives = 190/197 (96.45%), Query Frame = 0


Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPELRHYAPGVPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFVDHPGAVPISTVQGEELTKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFFVDHPGAVPIST QGEEL K IGA AYIECSSKTQQN+KAVFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFVDHPGAVPISTAQGEELRKLIGAAAYIECSSKTQQNIKAVFDAAIKVVLQP 180

Query: 181 PKSKKKKKKSQSVCSIL 198
           PK KKKKKK+Q  C+IL
Sbjct: 181 PKQKKKKKKAQKGCAIL 197

[Close]

BLAST of CmoCh12G003500 vs. ExPASy Swiss-Prot
Match: Q39435 (Rac-like GTP-binding protein RHO1 OS=Beta vulgaris OX=161934 GN=RHO1 PE=2 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 1.8e-102
Identity = 182/197 (92.39%), Postives = 190/197 (96.45%), Query Frame = 0


Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query: 121 DLRDDKQFFVDHPGAVPISTVQGEELTKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFF+DHPGAVPI+T QGEEL K IGAPAYIECSSKTQQNVKAVFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 181 PKSKKKKKKSQSVCSIL 198
           PK+KKKK K+Q  CSIL
Sbjct: 181 PKTKKKKSKAQKACSIL 197

[Close]

BLAST of CmoCh12G003500 vs. ExPASy Swiss-Prot
Match: Q38912 (Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana OX=3702 GN=ARAC3 PE=1 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 6.7e-102
Identity = 180/198 (90.91%), Postives = 191/198 (96.46%), Query Frame = 0


Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANV+VDGNT+NLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSL+SKASYENV+KKW+PELRHYAPGVPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFVDHPGAVPISTVQGEELTKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFF +HPGAVPIST QGEEL K IGAPAYIECS+KTQQNVKAVFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDAAIKVVLQP 180

Query: 181 PKSKKKKK-KSQSVCSIL 198
           PK+KKKKK KSQ  CSIL
Sbjct: 181 PKNKKKKKRKSQKGCSIL 198

[Close]

BLAST of CmoCh12G003500 vs. ExPASy Swiss-Prot
Match: O04369 (Rac-like GTP-binding protein RAC1 OS=Lotus japonicus OX=34305 GN=RAC1 PE=2 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 1.1e-101
Identity = 180/197 (91.37%), Postives = 188/197 (95.43%), Query Frame = 0


Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN+AKKWIPELRHYAPGVPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFVDHPGAVPISTVQGEELTKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDK F  DHPGAVPI+T QGEEL K IGAPAYIECSSKTQQNVKAVFDAAIKVVLQP
Sbjct: 121 DLRDDKHFLADHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 181 PKSKKKKKKSQSVCSIL 198
           PK KKKK+++Q  CSIL
Sbjct: 181 PKQKKKKREAQKSCSIL 197

[Close]

BLAST of CmoCh12G003500 vs. ExPASy Swiss-Prot
Match: P92978 (Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana OX=3702 GN=ARAC11 PE=1 SV=2)

HSP 1 Score: 369.8 bits (948), Expect = 1.9e-101
Identity = 178/197 (90.36%), Postives = 189/197 (95.94%), Query Frame = 0


Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
           MSASRF+KCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct: 1   MSASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query: 121 DLRDDKQFFVDHPGAVPISTVQGEELTKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFF+DHPGAVPI+T QGEEL K IGAP YIECSSKTQ+NVKAVFDAAI+VVLQP
Sbjct: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFDAAIRVVLQP 180

Query: 181 PKSKKKKKKSQSVCSIL 198
           PK KKKK K+Q  CSIL
Sbjct: 181 PKQKKKKSKAQKACSIL 197

[Close]

BLAST of CmoCh12G003500 vs. ExPASy TrEMBL
Match: A0A6J1KP50 (rac-like GTP-binding protein 5 OS=Cucurbita maxima OX=3661 GN=LOC111496326 PE=3 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 5.5e-107
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL 120

Query: 121 DLRDDKQFFVDHPGAVPISTVQGEELTKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFFVDHPGAVPISTVQGEELTKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFVDHPGAVPISTVQGEELTKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 181 PKSKKKKKKSQSVCSIL 198
           PKSKKKKKKSQSVCSIL
Sbjct: 181 PKSKKKKKKSQSVCSIL 197

[Close]

BLAST of CmoCh12G003500 vs. ExPASy TrEMBL
Match: A0A6J1GID5 (rac-like GTP-binding protein 5 OS=Cucurbita moschata OX=3662 GN=LOC111454197 PE=3 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 5.5e-107
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL 120

Query: 121 DLRDDKQFFVDHPGAVPISTVQGEELTKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFFVDHPGAVPISTVQGEELTKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFVDHPGAVPISTVQGEELTKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 181 PKSKKKKKKSQSVCSIL 198
           PKSKKKKKKSQSVCSIL
Sbjct: 181 PKSKKKKKKSQSVCSIL 197

[Close]

BLAST of CmoCh12G003500 vs. ExPASy TrEMBL
Match: A0A6J1K5N0 (rac-like GTP-binding protein RHO1 OS=Cucurbita maxima OX=3661 GN=LOC111492507 PE=3 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 1.6e-106
Identity = 195/197 (98.98%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL 120

Query: 121 DLRDDKQFFVDHPGAVPISTVQGEELTKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFFVDHPGAVPI+TVQGEELTKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFVDHPGAVPITTVQGEELTKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 181 PKSKKKKKKSQSVCSIL 198
           PKSKKKKKKSQSVCS+L
Sbjct: 181 PKSKKKKKKSQSVCSVL 197

[Close]

BLAST of CmoCh12G003500 vs. ExPASy TrEMBL
Match: A0A6J1HBK6 (rac-like GTP-binding protein RHO1 OS=Cucurbita moschata OX=3662 GN=LOC111462525 PE=3 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 1.6e-106
Identity = 195/197 (98.98%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL 120

Query: 121 DLRDDKQFFVDHPGAVPISTVQGEELTKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFFVDHPGAVPI+TVQGEELTKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFVDHPGAVPITTVQGEELTKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 181 PKSKKKKKKSQSVCSIL 198
           PKSKKKKKKSQSVCS+L
Sbjct: 181 PKSKKKKKKSQSVCSVL 197

[Close]

BLAST of CmoCh12G003500 vs. ExPASy TrEMBL
Match: A0A0A0LMJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G345950 PE=3 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 2.6e-104
Identity = 192/197 (97.46%), Postives = 194/197 (98.48%), Query Frame = 0


Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL 120

Query: 121 DLRDDKQFFVDHPGAVPISTVQGEELTKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFFVDHPGAVPISTVQGEEL K IGAPAYIECSSKTQQNVK VFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFVDHPGAVPISTVQGEELRKVIGAPAYIECSSKTQQNVKGVFDAAIKVVLQP 180

Query: 181 PKSKKKKKKSQSVCSIL 198
           PKSKKKKKKSQ+VCSIL
Sbjct: 181 PKSKKKKKKSQNVCSIL 197

[Close]

BLAST of CmoCh12G003500 vs. TAIR 10
Match: AT4G35020.1 (RAC-like 3 )

HSP 1 Score: 371.3 bits (952), Expect = 4.8e-103
Identity = 180/198 (90.91%), Postives = 191/198 (96.46%), Query Frame = 0


Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANV+VDGNT+NLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSL+SKASYENV+KKW+PELRHYAPGVPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFVDHPGAVPISTVQGEELTKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFF +HPGAVPIST QGEEL K IGAPAYIECS+KTQQNVKAVFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDAAIKVVLQP 180

Query: 181 PKSKKKKK-KSQSVCSIL 198
           PK+KKKKK KSQ  CSIL
Sbjct: 181 PKNKKKKKRKSQKGCSIL 198

[Close]

BLAST of CmoCh12G003500 vs. TAIR 10
Match: AT4G35020.2 (RAC-like 3 )

HSP 1 Score: 371.3 bits (952), Expect = 4.8e-103
Identity = 180/198 (90.91%), Postives = 191/198 (96.46%), Query Frame = 0


Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANV+VDGNT+NLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSL+SKASYENV+KKW+PELRHYAPGVPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFVDHPGAVPISTVQGEELTKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFF +HPGAVPIST QGEEL K IGAPAYIECS+KTQQNVKAVFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDAAIKVVLQP 180

Query: 181 PKSKKKKK-KSQSVCSIL 198
           PK+KKKKK KSQ  CSIL
Sbjct: 181 PKNKKKKKRKSQKGCSIL 198

[Close]

BLAST of CmoCh12G003500 vs. TAIR 10
Match: AT4G35020.3 (RAC-like 3 )

HSP 1 Score: 371.3 bits (952), Expect = 4.8e-103
Identity = 180/198 (90.91%), Postives = 191/198 (96.46%), Query Frame = 0


Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANV+VDGNT+NLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSL+SKASYENV+KKW+PELRHYAPGVPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFVDHPGAVPISTVQGEELTKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFF +HPGAVPIST QGEEL K IGAPAYIECS+KTQQNVKAVFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDAAIKVVLQP 180

Query: 181 PKSKKKKK-KSQSVCSIL 198
           PK+KKKKK KSQ  CSIL
Sbjct: 181 PKNKKKKKRKSQKGCSIL 198

[Close]

BLAST of CmoCh12G003500 vs. TAIR 10
Match: AT3G51300.1 (RHO-related protein from plants 1 )

HSP 1 Score: 369.8 bits (948), Expect = 1.4e-102
Identity = 178/197 (90.36%), Postives = 189/197 (95.94%), Query Frame = 0


Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
           MSASRF+KCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct: 1   MSASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query: 121 DLRDDKQFFVDHPGAVPISTVQGEELTKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFF+DHPGAVPI+T QGEEL K IGAP YIECSSKTQ+NVKAVFDAAI+VVLQP
Sbjct: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFDAAIRVVLQP 180

Query: 181 PKSKKKKKKSQSVCSIL 198
           PK KKKK K+Q  CSIL
Sbjct: 181 PKQKKKKSKAQKACSIL 197

[Close]

BLAST of CmoCh12G003500 vs. TAIR 10
Match: AT2G17800.1 (Arabidopsis RAC-like 1 )

HSP 1 Score: 369.0 bits (946), Expect = 2.4e-102
Identity = 179/197 (90.86%), Postives = 188/197 (95.43%), Query Frame = 0


Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query: 121 DLRDDKQFFVDHPGAVPISTVQGEELTKTIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFF+DHPGAVPI+T QGEEL K IGAPAYIECSSKTQ+NVK VFDAAI+VVLQP
Sbjct: 121 DLRDDKQFFIDHPGAVPITTAQGEELKKLIGAPAYIECSSKTQENVKGVFDAAIRVVLQP 180

Query: 181 PKSKKKKKKSQSVCSIL 198
           PK KKKK K+Q  CSIL
Sbjct: 181 PKQKKKKSKAQKACSIL 197

The following BLAST results are available for this feature:

BLAST of CmoCh12G003500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6EP31	6.1e-103	92.89	Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=RAC5 ...	[more]
Q39435	1.8e-102	92.39	Rac-like GTP-binding protein RHO1 OS=Beta vulgaris OX=161934 GN=RHO1 PE=2 SV=1	[more]
Q38912	6.7e-102	90.91	Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana OX=3702 GN=ARAC3 PE=1...	[more]
O04369	1.1e-101	91.37	Rac-like GTP-binding protein RAC1 OS=Lotus japonicus OX=34305 GN=RAC1 PE=2 SV=1	[more]
P92978	1.9e-101	90.36	Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana OX=3702 GN=ARAC11 PE...	[more]

BLAST of CmoCh12G003500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KP50	5.5e-107	100.00	rac-like GTP-binding protein 5 OS=Cucurbita maxima OX=3661 GN=LOC111496326 PE=3 ...	[more]
A0A6J1GID5	5.5e-107	100.00	rac-like GTP-binding protein 5 OS=Cucurbita moschata OX=3662 GN=LOC111454197 PE=...	[more]
A0A6J1K5N0	1.6e-106	98.98	rac-like GTP-binding protein RHO1 OS=Cucurbita maxima OX=3661 GN=LOC111492507 PE...	[more]
A0A6J1HBK6	1.6e-106	98.98	rac-like GTP-binding protein RHO1 OS=Cucurbita moschata OX=3662 GN=LOC111462525 ...	[more]
A0A0A0LMJ2	2.6e-104	97.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G345950 PE=3 SV=1	[more]

BLAST of CmoCh12G003500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35020.1	4.8e-103	90.91	RAC-like 3	[more]
AT4G35020.2	4.8e-103	90.91	RAC-like 3	[more]
AT4G35020.3	4.8e-103	90.91	RAC-like 3	[more]
AT3G51300.1	1.4e-102	90.36	RHO-related protein from plants 1	[more]
AT2G17800.1	2.4e-102	90.86	Arabidopsis RAC-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 30..46 score: 32.14 coord: 155..177 score: 34.52 coord: 109..122 score: 52.36 coord: 47..69 score: 49.3 coord: 7..28 score: 44.74
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 4..180 e-value: 5.5E-22 score: 89.0
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 7..180 e-value: 4.5E-28 score: 109.2
None	No IPR available	PANTHER	PTHR24072:SF336	RAC-LIKE GTP-BINDING PROTEIN 5	coord: 1..197
None	No IPR available	PROSITE	PS51420	RHO	coord: 1..177 score: 24.757963
None	No IPR available	PROSITE	PS51419	RAB	coord: 2..197 score: 21.095652
None	No IPR available	CDD	cd04133	Rop_like	coord: 6..178 e-value: 2.34476E-136 score: 376.494
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 9..180 e-value: 3.8E-113 score: 391.9
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 8..178 e-value: 1.2E-51 score: 174.6
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 2..197 score: 17.466312
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 7..171 e-value: 2.2E-35 score: 119.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 5..192 e-value: 3.3E-73 score: 247.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 6..178
IPR003578	Small GTPase Rho	PANTHER	PTHR24072	RHO FAMILY GTPASE	coord: 1..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G003500.1	CmoCh12G003500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007015	actin filament organization
biological_process	GO:0007163	establishment or maintenance of cell polarity
biological_process	GO:0015031	protein transport
biological_process	GO:0032956	regulation of actin cytoskeleton organization
biological_process	GO:0008360	regulation of cell shape
biological_process	GO:0042147	retrograde transport, endosome to Golgi
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0030865	cortical cytoskeleton organization
cellular_component	GO:0005634	nucleus
cellular_component	GO:0030906	retromer, cargo-selective complex
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0042995	cell projection
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005856	cytoskeleton
cellular_component	GO:0031410	cytoplasmic vesicle
cellular_component	GO:0005938	cell cortex
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0019901	protein kinase binding