CmoCh12G002170 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G002170
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	la protein 1-like
Location	Cmo_Chr12: 1429725 .. 1430369 (-)
RNA-Seq Expression	CmoCh12G002170
Synteny	CmoCh12G002170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAACGTGCCGAGATCATCTTCCTTGTTCCTTTTCCATGTCCGATCGAGCGGTTTCTTGATCTCAGGTGAGGCTGAGAAGGAGTATTGGAGGGCGCTCCGCAGCAGCCAAGAAAAGCATCATCGTGACTTTAAGGGCAACCGTGGAAGGTTTGTTTTATAAACGACGACAATTAGTGTCTTATTCGAATTGGTTGGTTACTGAAAACTAATGCTGGATCATCTTCCATGCTTCTCTGCTGCTGCTTGCTATTTCTACAGGGGTGGTAAATTCAACAGAGGTGGAAAGCATGGTCGGTCGAGAGGATACGACAACAACCGAGGTCGCCCGAACAAAGCTCAAAAAGTTTGAGCTGCTGCCTGCCTGGTGTGTCTTATGGCCAGCTCTGCTACAATTTTGGAGGAAAAGCTCTCTACCTCTACTGGTCTTTTTATTTATCAGCTTCGTGTTTAGTTTAGAGGTTGTCTTTGTGTTTTTTTTTTTTTTTGAATTTTTATTCGATAATATTTGAAAATTTGAACATATAAAGCTACTAACTCAATTCAAAAGCCCTATTTTGTTGTTCTTCCCCACTTTACAAGTTTTTTTTCCTCAAAATAGTGAAAATCTTTGCGTGTTAGAAACGAAATGGAATAGTGGCTG

mRNA sequence

ATGTTGAACGTGCCGAGATCATCTTCCTTGTTCCTTTTCCATGTCCGATCGAGCGGTTTCTTGATCTCAGGTGAGGCTGAGAAGGAGTATTGGAGGGCGCTCCGCAGCAGCCAAGAAAAGCATCATCGTGACTTTAAGGGCAACCGTGGAAGGGGTGGTAAATTCAACAGAGGTGGAAAGCATGGTCGGTCGAGAGGATACGACAACAACCGAGGTCGCCCGAACAAAGCTCAAAAAGTTTGAGCTGCTGCCTGCCTGGTGTGTCTTATGGCCAGCTCTGCTACAATTTTGGAGGAAAAGCTCTCTACCTCTACTGGTCTTTTTATTTATCAGCTTCGTGTTTAGTTTAGAGGTTGTCTTTGTGTTTTTTTTTTTTTTTGAATTTTTATTCGATAATATTTGAAAATTTGAACATATAAAGCTACTAACTCAATTCAAAAGCCCTATTTTGTTGTTCTTCCCCACTTTACAAGTTTTTTTTCCTCAAAATAGTGAAAATCTTTGCGTGTTAGAAACGAAATGGAATAGTGGCTG

Coding sequence (CDS)

ATGTTGAACGTGCCGAGATCATCTTCCTTGTTCCTTTTCCATGTCCGATCGAGCGGTTTCTTGATCTCAGGTGAGGCTGAGAAGGAGTATTGGAGGGCGCTCCGCAGCAGCCAAGAAAAGCATCATCGTGACTTTAAGGGCAACCGTGGAAGGGGTGGTAAATTCAACAGAGGTGGAAAGCATGGTCGGTCGAGAGGATACGACAACAACCGAGGTCGCCCGAACAAAGCTCAAAAAGTTTGA

Protein sequence

MLNVPRSSSLFLFHVRSSGFLISGEAEKEYWRALRSSQEKHHRDFKGNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV

Homology

[Close]

BLAST of CmoCh12G002170 vs. ExPASy Swiss-Prot
Match: Q93ZV7 (La protein 1 OS=Arabidopsis thaliana OX=3702 GN=LA1 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.0e-04
Identity = 33/59 (55.93%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 22  ISGEAEKEYWRALRSSQEKHHRDFKGNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV 81
           + GEAEKEYW  LRS   K   D  G  GRGG+  RGG+ GR RG D+  GR NK+QKV
Sbjct: 378 VIGEAEKEYWTLLRS---KDRFDKGGRGGRGGR--RGGRFGRKRGSDSPGGRWNKSQKV 431

[Close]

BLAST of CmoCh12G002170 vs. ExPASy TrEMBL
Match: A0A6J1GIM1 (la protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111454576 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.6e-23
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 22  ISGEAEKEYWRALRSSQEKHHRDFKGNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV 81
           +SGEAEKEYWRALRSSQEKHHRDFKGNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV
Sbjct: 411 VSGEAEKEYWRALRSSQEKHHRDFKGNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV 469

[Close]

BLAST of CmoCh12G002170 vs. ExPASy TrEMBL
Match: A0A6J1KQ54 (la protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111496200 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.8e-23
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 22  ISGEAEKEYWRALRSSQEKHHRDFKGNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV 81
           +SGEAEKEYWRALRSSQEKHHRD+KGNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV
Sbjct: 411 VSGEAEKEYWRALRSSQEKHHRDYKGNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV 469

[Close]

BLAST of CmoCh12G002170 vs. ExPASy TrEMBL
Match: A0A5A7VFC4 (La protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G003520 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.6e-20
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 22  ISGEAEKEYWRALRSSQEKHHRDFKGNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV 81
           +SGEAEKEYW  LRS+QEKHHRDFKGNRGRGGKFNRGGKHGRSRG+DN+RGRPNKAQKV
Sbjct: 413 VSGEAEKEYWSLLRSNQEKHHRDFKGNRGRGGKFNRGGKHGRSRGHDNHRGRPNKAQKV 471

[Close]

BLAST of CmoCh12G002170 vs. ExPASy TrEMBL
Match: A0A0A0LP79 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G375250 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.6e-20
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 22  ISGEAEKEYWRALRSSQEKHHRDFKGNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV 81
           +SGEAEKEYW  LRS+QEKHHRDFKGNRGRGGKFNRGGKHGRSRG+DN+RGRPNKAQKV
Sbjct: 411 VSGEAEKEYWSLLRSNQEKHHRDFKGNRGRGGKFNRGGKHGRSRGHDNHRGRPNKAQKV 469

[Close]

BLAST of CmoCh12G002170 vs. ExPASy TrEMBL
Match: A0A1S3BCL6 (la protein 1 OS=Cucumis melo OX=3656 GN=LOC103488199 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.6e-20
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 22  ISGEAEKEYWRALRSSQEKHHRDFKGNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV 81
           +SGEAEKEYW  LRS+QEKHHRDFKGNRGRGGKFNRGGKHGRSRG+DN+RGRPNKAQKV
Sbjct: 413 VSGEAEKEYWSLLRSNQEKHHRDFKGNRGRGGKFNRGGKHGRSRGHDNHRGRPNKAQKV 471

[Close]

BLAST of CmoCh12G002170 vs. TAIR 10
Match: AT4G32720.1 (La protein 1 )

HSP 1 Score: 46.2 bits (108), Expect = 1.4e-05
Identity = 33/59 (55.93%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 22  ISGEAEKEYWRALRSSQEKHHRDFKGNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV 81
           + GEAEKEYW  LRS   K   D  G  GRGG+  RGG+ GR RG D+  GR NK+QKV
Sbjct: 378 VIGEAEKEYWTLLRS---KDRFDKGGRGGRGGR--RGGRFGRKRGSDSPGGRWNKSQKV 431

The following BLAST results are available for this feature:

BLAST of CmoCh12G002170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZV7	2.0e-04	55.93	La protein 1 OS=Arabidopsis thaliana OX=3702 GN=LA1 PE=1 SV=1	[more]

BLAST of CmoCh12G002170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GIM1	2.6e-23	98.31	la protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111454576 PE=4 SV=1	[more]
A0A6J1KQ54	5.8e-23	96.61	la protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111496200 PE=4 SV=1	[more]
A0A5A7VFC4	1.6e-20	89.83	La protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G003520 P...	[more]
A0A0A0LP79	1.6e-20	89.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G375250 PE=4 SV=1	[more]
A0A1S3BCL6	1.6e-20	89.83	la protein 1 OS=Cucumis melo OX=3656 GN=LOC103488199 PE=4 SV=1	[more]

BLAST of CmoCh12G002170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32720.1	1.4e-05	55.93	La protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G002170.1	CmoCh12G002170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008033	tRNA processing
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003729	mRNA binding