CmoCh12G000950 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G000950
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description18S pre-ribosomal assembly protein gar2-related
LocationCmo_Chr12: 511999 .. 514440 (+)
RNA-Seq ExpressionCmoCh12G000950
SyntenyCmoCh12G000950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACTGGGTAACAACAATTTCTTTTGTCTTGTATTCTACTTGAAAGTTCTTCATTTTTATTACTGTTTTTATTCCCTCTTTGCTTTTCTACCCAATGATCTTATGTTGTTTTGTAAAAGGAAAGTTTATTTACTATCGTTTTCGTGCTATTTACGCTCGTCAATCTACTGCCTTTTGTCCAACTTGCTGTTCTAAGTTACATTTGTAATTATGTATCTGCAGAAAGTGACCTTCCATTTTACTCTTCAATGACCAGCTCAAATTGTGTTCCAGAATCTATTGAATGCAATTACAATACTGAGTTGCAACACCAGATCGTTAGTATCGATCCAATTGGTCTCTTGTGTCGAGAAAAGATAAACCACGAGGATGCCATTCAATCTCCATCTTCAACTGGTGGTGGGAATAGTTGCCTGACCACTAAAATTAACCACTCGTCTGTAGATTGTTTTGATGATAATGCTGAAGGTATTAATGCATTTATGTCATCATCCGGTAAGAAATCCTCAGACTCGTATGTGGACAAAAGTGTCATGGAATGTCAAATGTCGACAATGATAGTATGTGACAAGGAAATTAATGTCAATGATGTGAAGGACATCTGTATTGATGAAGGGGTGCCTTCTTTGGTCAACTTCATCTTTAGGAGTACGGATGAGAAGTCAAGCTACAAAACCCTGCCTTTGAACCAAAATGAAGGTTCTATAAAAGAACAAAAGAATTCTTCTGAGGTGTTGGAGTCCATTGCAGATAATAAAAAAATCTCTTTAGAAGATCACTTTGCCACGGACTGGAGTACTCATAATGATGCTAAGGATCTGAATCAGATAGAGGAAGCAAAACTCAATCAAAGTGAACCACAAGTTCCGGTGCAAAAGCTAGTTAGGGAAAGTCACTCTTCCGAGTCTTTAGACAGCCTAGGTATCCAGGTATGCATATTTCTGGTCAAGTTATTAATCATGTTGTGAGATCCCACATCGGTTGGAGAGGAGAACGAAACACCCTTTATAAATGTGTGGAAACCTCTCCCTAGCAGACGCATTTTAAAAACTTTGAGGGAAACTCCGAAAGGGAAAGCCCAAAGAAGGCAATATTTGCTAACGGTGGACTTGGTCTGTTACAAATGGTATTAGAGCCAAACACCGAGCGGTGTGCTAGCGAGAATGCTGGGCCCCGAAGGGGGGTGAATTGTGAGATCCCACATCGGTTGGAGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCTCTAGCCGATGCGTTTTAAAAACTTTGAGATAAATCCCGTAAGGGAAAACCCAAAGAGGACAATATCTACTAGCGGTGTGCTTGGGCTTGAACTGTTACAGATGTTCCTCTTGCACCTCATGTTCAAGTGATTCTGAACTTTTCAGTGCACTTCATGTTCAAGTGATTCTGAACTTTTCAGGTTTGATGTTTTTCAGAATTGGTTGATGTAGGTTGGATTTCTTGTAATGGCAGATATCTAGTGAAAAAGCCAACTCGGAAGACCCTGCTTCAGCTTTCAAATCTGTTGAATCTTGCAATGACAATTCTGCTCTGGGAACTGAGGCAGAATCACCAAATGAAAACATTCCAACACAACAACCTTCAGCTCATAATAATGAATTTGAGAAGGGAAGTACTACATTGAATCTCAATTCAATCTCTCCCATGGTCAATGGTGAAGAAGAACACCATGGAAATATCAACTCAGACTACCCAGGACCCATGACCAGTAGTGCTGGGACACAGGAGTGTTATGGAAGCAACGATTCTGCATTCGGAACCCAAGTTTCGACAAGTCGATTAATTTCAAGCCAGACTGCACACGACAGTGGCGAGTCTAGTTTCTCTGCTCTAGATCCATTAGCTAGCCTTGTTACTTACTCGGGGCCAATAGCTTATTCTGGAAGCATCTCTCTTCGATCGGAAAGTAGCACGACAAGCACCCGCTCTTTTGCCTTCCCTATGTAAGTAGCAAGCAATCTCTCTTCTCTTCTTGATCTATCCTGTCCTAAATTGTAATCCAAGGTGAATGATATTTACAGATTACAACAGTCTGAATGGAATAGCAGCCCGGTTAAAATGGTAAAAGCTGAACGGAGGCATTACCGGAAGTACAGAGGATGGAGGGAGGGGCTTCTATGCTGCAGATTCTGAGTGCTTTCTTTGTTTTGCTATCAGTAGAGGTAGATTCTGTCCACACATGTAAGTAGAAGATGCATTATTTCTTTGCTATTATGTGAAATTTAAGGTGTTAGTAATACCTCATCTCTTTCTCTCTGGTTGTTTCTTGTTTCTGCACTCATTCATATTGTTCTTTGATTTGTATAAGAACACGATATGACATAGTTTCTCTGCATAGAATGATATTATCACAACTCTTCCACAAGAGTTAAATTTTTATCACAAACTCTTATATGAGACAAT

mRNA sequence

ATGAAACTGGAAAGTGACCTTCCATTTTACTCTTCAATGACCAGCTCAAATTGTGTTCCAGAATCTATTGAATGCAATTACAATACTGAGTTGCAACACCAGATCGTTAGTATCGATCCAATTGGTCTCTTGTGTCGAGAAAAGATAAACCACGAGGATGCCATTCAATCTCCATCTTCAACTGGTGGTGGGAATAGTTGCCTGACCACTAAAATTAACCACTCGTCTGTAGATTGTTTTGATGATAATGCTGAAGGTATTAATGCATTTATGTCATCATCCGGTAAGAAATCCTCAGACTCGTATGTGGACAAAAGTGTCATGGAATGTCAAATGTCGACAATGATAGTATGTGACAAGGAAATTAATGTCAATGATGTGAAGGACATCTGTATTGATGAAGGGGTGCCTTCTTTGGTCAACTTCATCTTTAGGAGTACGGATGAGAAGTCAAGCTACAAAACCCTGCCTTTGAACCAAAATGAAGGTTCTATAAAAGAACAAAAGAATTCTTCTGAGGTGTTGGAGTCCATTGCAGATAATAAAAAAATCTCTTTAGAAGATCACTTTGCCACGGACTGGAGTACTCATAATGATGCTAAGGATCTGAATCAGATAGAGGAAGCAAAACTCAATCAAAGTGAACCACAAGTTCCGGTGCAAAAGCTAGTTAGGGAAAGTCACTCTTCCGAGTCTTTAGACAGCCTAGGTATCCAGATATCTAGTGAAAAAGCCAACTCGGAAGACCCTGCTTCAGCTTTCAAATCTGTTGAATCTTGCAATGACAATTCTGCTCTGGGAACTGAGGCAGAATCACCAAATGAAAACATTCCAACACAACAACCTTCAGCTCATAATAATGAATTTGAGAAGGGAAGTACTACATTGAATCTCAATTCAATCTCTCCCATGGTCAATGGTGAAGAAGAACACCATGGAAATATCAACTCAGACTACCCAGGACCCATGACCAGTAGTGCTGGGACACAGGAGTGTTATGGAAGCAACGATTCTGCATTCGGAACCCAAGTTTCGACAAGTCGATTAATTTCAAGCCAGACTGCACACGACAGTGGCGAGTCTAGTTTCTCTGCTCTAGATCCATTAGCTAGCCTTGTTACTTACTCGGGGCCAATAGCTTATTCTGGAAGCATCTCTCTTCGATCGGAAAGTAGCACGACAAGCACCCGCTCTTTTGCCTTCCCTATATTACAACAGTCTGAATGGAATAGCAGCCCGGTTAAAATGGTAAAAGCTGAACGGAGGCATTACCGGAAGTACAGAGGATGGAGGGAGGGGCTTCTATGCTGCAGATTCTGAGTGCTTTCTTTGTTTTGCTATCAGTAGAGGTAGATTCTGTCCACACATGTAAGTAGAAGATGCATTATTTCTTTGCTATTATGTGAAATTTAAGGTGTTAGTAATACCTCATCTCTTTCTCTCTGGTTGTTTCTTGTTTCTGCACTCATTCATATTGTTCTTTGATTTGTATAAGAACACGATATGACATAGTTTCTCTGCATAGAATGATATTATCACAACTCTTCCACAAGAGTTAAATTTTTATCACAAACTCTTATATGAGACAAT

Coding sequence (CDS)

ATGAAACTGGAAAGTGACCTTCCATTTTACTCTTCAATGACCAGCTCAAATTGTGTTCCAGAATCTATTGAATGCAATTACAATACTGAGTTGCAACACCAGATCGTTAGTATCGATCCAATTGGTCTCTTGTGTCGAGAAAAGATAAACCACGAGGATGCCATTCAATCTCCATCTTCAACTGGTGGTGGGAATAGTTGCCTGACCACTAAAATTAACCACTCGTCTGTAGATTGTTTTGATGATAATGCTGAAGGTATTAATGCATTTATGTCATCATCCGGTAAGAAATCCTCAGACTCGTATGTGGACAAAAGTGTCATGGAATGTCAAATGTCGACAATGATAGTATGTGACAAGGAAATTAATGTCAATGATGTGAAGGACATCTGTATTGATGAAGGGGTGCCTTCTTTGGTCAACTTCATCTTTAGGAGTACGGATGAGAAGTCAAGCTACAAAACCCTGCCTTTGAACCAAAATGAAGGTTCTATAAAAGAACAAAAGAATTCTTCTGAGGTGTTGGAGTCCATTGCAGATAATAAAAAAATCTCTTTAGAAGATCACTTTGCCACGGACTGGAGTACTCATAATGATGCTAAGGATCTGAATCAGATAGAGGAAGCAAAACTCAATCAAAGTGAACCACAAGTTCCGGTGCAAAAGCTAGTTAGGGAAAGTCACTCTTCCGAGTCTTTAGACAGCCTAGGTATCCAGATATCTAGTGAAAAAGCCAACTCGGAAGACCCTGCTTCAGCTTTCAAATCTGTTGAATCTTGCAATGACAATTCTGCTCTGGGAACTGAGGCAGAATCACCAAATGAAAACATTCCAACACAACAACCTTCAGCTCATAATAATGAATTTGAGAAGGGAAGTACTACATTGAATCTCAATTCAATCTCTCCCATGGTCAATGGTGAAGAAGAACACCATGGAAATATCAACTCAGACTACCCAGGACCCATGACCAGTAGTGCTGGGACACAGGAGTGTTATGGAAGCAACGATTCTGCATTCGGAACCCAAGTTTCGACAAGTCGATTAATTTCAAGCCAGACTGCACACGACAGTGGCGAGTCTAGTTTCTCTGCTCTAGATCCATTAGCTAGCCTTGTTACTTACTCGGGGCCAATAGCTTATTCTGGAAGCATCTCTCTTCGATCGGAAAGTAGCACGACAAGCACCCGCTCTTTTGCCTTCCCTATATTACAACAGTCTGAATGGAATAGCAGCCCGGTTAAAATGGTAAAAGCTGAACGGAGGCATTACCGGAAGTACAGAGGATGGAGGGAGGGGCTTCTATGCTGCAGATTCTGA

Protein sequence

MKLESDLPFYSSMTSSNCVPESIECNYNTELQHQIVSIDPIGLLCREKINHEDAIQSPSSTGGGNSCLTTKINHSSVDCFDDNAEGINAFMSSSGKKSSDSYVDKSVMECQMSTMIVCDKEINVNDVKDICIDEGVPSLVNFIFRSTDEKSSYKTLPLNQNEGSIKEQKNSSEVLESIADNKKISLEDHFATDWSTHNDAKDLNQIEEAKLNQSEPQVPVQKLVRESHSSESLDSLGIQISSEKANSEDPASAFKSVESCNDNSALGTEAESPNENIPTQQPSAHNNEFEKGSTTLNLNSISPMVNGEEEHHGNINSDYPGPMTSSAGTQECYGSNDSAFGTQVSTSRLISSQTAHDSGESSFSALDPLASLVTYSGPIAYSGSISLRSESSTTSTRSFAFPILQQSEWNSSPVKMVKAERRHYRKYRGWREGLLCCRF
Homology
BLAST of CmoCh12G000950 vs. ExPASy TrEMBL
Match: A0A6J1GGY0 (uncharacterized protein LOC111454119 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454119 PE=4 SV=1)

HSP 1 Score: 848.6 bits (2191), Expect = 1.2e-242
Identity = 439/439 (100.00%), Postives = 439/439 (100.00%), Query Frame = 0

Query: 1   MKLESDLPFYSSMTSSNCVPESIECNYNTELQHQIVSIDPIGLLCREKINHEDAIQSPSS 60
           MKLESDLPFYSSMTSSNCVPESIECNYNTELQHQIVSIDPIGLLCREKINHEDAIQSPSS
Sbjct: 1   MKLESDLPFYSSMTSSNCVPESIECNYNTELQHQIVSIDPIGLLCREKINHEDAIQSPSS 60

Query: 61  TGGGNSCLTTKINHSSVDCFDDNAEGINAFMSSSGKKSSDSYVDKSVMECQMSTMIVCDK 120
           TGGGNSCLTTKINHSSVDCFDDNAEGINAFMSSSGKKSSDSYVDKSVMECQMSTMIVCDK
Sbjct: 61  TGGGNSCLTTKINHSSVDCFDDNAEGINAFMSSSGKKSSDSYVDKSVMECQMSTMIVCDK 120

Query: 121 EINVNDVKDICIDEGVPSLVNFIFRSTDEKSSYKTLPLNQNEGSIKEQKNSSEVLESIAD 180
           EINVNDVKDICIDEGVPSLVNFIFRSTDEKSSYKTLPLNQNEGSIKEQKNSSEVLESIAD
Sbjct: 121 EINVNDVKDICIDEGVPSLVNFIFRSTDEKSSYKTLPLNQNEGSIKEQKNSSEVLESIAD 180

Query: 181 NKKISLEDHFATDWSTHNDAKDLNQIEEAKLNQSEPQVPVQKLVRESHSSESLDSLGIQI 240
           NKKISLEDHFATDWSTHNDAKDLNQIEEAKLNQSEPQVPVQKLVRESHSSESLDSLGIQI
Sbjct: 181 NKKISLEDHFATDWSTHNDAKDLNQIEEAKLNQSEPQVPVQKLVRESHSSESLDSLGIQI 240

Query: 241 SSEKANSEDPASAFKSVESCNDNSALGTEAESPNENIPTQQPSAHNNEFEKGSTTLNLNS 300
           SSEKANSEDPASAFKSVESCNDNSALGTEAESPNENIPTQQPSAHNNEFEKGSTTLNLNS
Sbjct: 241 SSEKANSEDPASAFKSVESCNDNSALGTEAESPNENIPTQQPSAHNNEFEKGSTTLNLNS 300

Query: 301 ISPMVNGEEEHHGNINSDYPGPMTSSAGTQECYGSNDSAFGTQVSTSRLISSQTAHDSGE 360
           ISPMVNGEEEHHGNINSDYPGPMTSSAGTQECYGSNDSAFGTQVSTSRLISSQTAHDSGE
Sbjct: 301 ISPMVNGEEEHHGNINSDYPGPMTSSAGTQECYGSNDSAFGTQVSTSRLISSQTAHDSGE 360

Query: 361 SSFSALDPLASLVTYSGPIAYSGSISLRSESSTTSTRSFAFPILQQSEWNSSPVKMVKAE 420
           SSFSALDPLASLVTYSGPIAYSGSISLRSESSTTSTRSFAFPILQQSEWNSSPVKMVKAE
Sbjct: 361 SSFSALDPLASLVTYSGPIAYSGSISLRSESSTTSTRSFAFPILQQSEWNSSPVKMVKAE 420

Query: 421 RRHYRKYRGWREGLLCCRF 440
           RRHYRKYRGWREGLLCCRF
Sbjct: 421 RRHYRKYRGWREGLLCCRF 439

BLAST of CmoCh12G000950 vs. ExPASy TrEMBL
Match: A0A6J1GH17 (uncharacterized protein LOC111454119 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111454119 PE=4 SV=1)

HSP 1 Score: 822.0 bits (2122), Expect = 1.2e-234
Identity = 425/426 (99.77%), Postives = 425/426 (99.77%), Query Frame = 0

Query: 14  TSSNCVPESIECNYNTELQHQIVSIDPIGLLCREKINHEDAIQSPSSTGGGNSCLTTKIN 73
           T SNCVPESIECNYNTELQHQIVSIDPIGLLCREKINHEDAIQSPSSTGGGNSCLTTKIN
Sbjct: 8   TGSNCVPESIECNYNTELQHQIVSIDPIGLLCREKINHEDAIQSPSSTGGGNSCLTTKIN 67

Query: 74  HSSVDCFDDNAEGINAFMSSSGKKSSDSYVDKSVMECQMSTMIVCDKEINVNDVKDICID 133
           HSSVDCFDDNAEGINAFMSSSGKKSSDSYVDKSVMECQMSTMIVCDKEINVNDVKDICID
Sbjct: 68  HSSVDCFDDNAEGINAFMSSSGKKSSDSYVDKSVMECQMSTMIVCDKEINVNDVKDICID 127

Query: 134 EGVPSLVNFIFRSTDEKSSYKTLPLNQNEGSIKEQKNSSEVLESIADNKKISLEDHFATD 193
           EGVPSLVNFIFRSTDEKSSYKTLPLNQNEGSIKEQKNSSEVLESIADNKKISLEDHFATD
Sbjct: 128 EGVPSLVNFIFRSTDEKSSYKTLPLNQNEGSIKEQKNSSEVLESIADNKKISLEDHFATD 187

Query: 194 WSTHNDAKDLNQIEEAKLNQSEPQVPVQKLVRESHSSESLDSLGIQISSEKANSEDPASA 253
           WSTHNDAKDLNQIEEAKLNQSEPQVPVQKLVRESHSSESLDSLGIQISSEKANSEDPASA
Sbjct: 188 WSTHNDAKDLNQIEEAKLNQSEPQVPVQKLVRESHSSESLDSLGIQISSEKANSEDPASA 247

Query: 254 FKSVESCNDNSALGTEAESPNENIPTQQPSAHNNEFEKGSTTLNLNSISPMVNGEEEHHG 313
           FKSVESCNDNSALGTEAESPNENIPTQQPSAHNNEFEKGSTTLNLNSISPMVNGEEEHHG
Sbjct: 248 FKSVESCNDNSALGTEAESPNENIPTQQPSAHNNEFEKGSTTLNLNSISPMVNGEEEHHG 307

Query: 314 NINSDYPGPMTSSAGTQECYGSNDSAFGTQVSTSRLISSQTAHDSGESSFSALDPLASLV 373
           NINSDYPGPMTSSAGTQECYGSNDSAFGTQVSTSRLISSQTAHDSGESSFSALDPLASLV
Sbjct: 308 NINSDYPGPMTSSAGTQECYGSNDSAFGTQVSTSRLISSQTAHDSGESSFSALDPLASLV 367

Query: 374 TYSGPIAYSGSISLRSESSTTSTRSFAFPILQQSEWNSSPVKMVKAERRHYRKYRGWREG 433
           TYSGPIAYSGSISLRSESSTTSTRSFAFPILQQSEWNSSPVKMVKAERRHYRKYRGWREG
Sbjct: 368 TYSGPIAYSGSISLRSESSTTSTRSFAFPILQQSEWNSSPVKMVKAERRHYRKYRGWREG 427

Query: 434 LLCCRF 440
           LLCCRF
Sbjct: 428 LLCCRF 433

BLAST of CmoCh12G000950 vs. ExPASy TrEMBL
Match: A0A6J1KPB6 (uncharacterized protein LOC111496042 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496042 PE=4 SV=1)

HSP 1 Score: 807.4 bits (2084), Expect = 3.0e-230
Identity = 422/439 (96.13%), Postives = 427/439 (97.27%), Query Frame = 0

Query: 1   MKLESDLPFYSSMTSSNCVPESIECNYNTELQHQIVSIDPIGLLCREKINHEDAIQSPSS 60
           MKLESD PFYSSMTSSNCVPESIE NYNTELQHQI+SIDPIGLLCREKINHEDAIQSPSS
Sbjct: 1   MKLESDPPFYSSMTSSNCVPESIEGNYNTELQHQIISIDPIGLLCREKINHEDAIQSPSS 60

Query: 61  TGGGNSCLTTKINHSSVDCFDDNAEGINAFMSSSGKKSSDSYVDKSVMECQMSTMIVCDK 120
           TGGGNSCLTTKINHSSVDCFDDNAEGINAFMSSSGKKSSDSYVDKSVMECQMS MIVCDK
Sbjct: 61  TGGGNSCLTTKINHSSVDCFDDNAEGINAFMSSSGKKSSDSYVDKSVMECQMSKMIVCDK 120

Query: 121 EINVNDVKDICIDEGVPSLVNFIFRSTDEKSSYKTLPLNQNEGSIKEQKNSSEVLESIAD 180
           EINVNDVKDICIDEGVPSLVNFIFRSTDEKSSYKTLPLNQNEGS+KEQKNSSEVLESIAD
Sbjct: 121 EINVNDVKDICIDEGVPSLVNFIFRSTDEKSSYKTLPLNQNEGSVKEQKNSSEVLESIAD 180

Query: 181 NKKISLEDHFATDWSTHNDAKDLNQIEEAKLNQSEPQVPVQKLVRESHSSESLDSLGIQI 240
           NKKISLEDHFA+DWSTHNDAKDLNQIEEAKLNQSEPQV VQKLVRESHSSESLD+LGIQI
Sbjct: 181 NKKISLEDHFASDWSTHNDAKDLNQIEEAKLNQSEPQVLVQKLVRESHSSESLDNLGIQI 240

Query: 241 SSEKANSEDPASAFKSVESCNDNSALGTEAESPNENIPTQQPSAHNNEFEKGSTTLNLNS 300
           SSEKANSEDPASAFKSVESCNDNSALGTEAES NENIPTQ PSA NNEFEKGSTTLNLNS
Sbjct: 241 SSEKANSEDPASAFKSVESCNDNSALGTEAESTNENIPTQHPSARNNEFEKGSTTLNLNS 300

Query: 301 ISPMVNGEEEHHGNINSDYPGPMTSSAGTQECYGSNDSAFGTQVSTSRLISSQTAHDSGE 360
           ISPM NGEEEHHGNI  D+PGPMTSSAGTQECYGSNDSAFGTQVSTSRLISSQTAHD GE
Sbjct: 301 ISPMANGEEEHHGNIKLDFPGPMTSSAGTQECYGSNDSAFGTQVSTSRLISSQTAHDCGE 360

Query: 361 SSFSALDPLASLVTYSGPIAYSGSISLRSESSTTSTRSFAFPILQQSEWNSSPVKMVKAE 420
           SSFSALDPLASLVTYSGPIAYSGSISLRSESSTTSTRSFAFPIL QSEWNSSPVKMVKAE
Sbjct: 361 SSFSALDPLASLVTYSGPIAYSGSISLRSESSTTSTRSFAFPIL-QSEWNSSPVKMVKAE 420

Query: 421 RRHYRKYRGWREGLLCCRF 440
           RRHYRKYRGWREGLLCCRF
Sbjct: 421 RRHYRKYRGWREGLLCCRF 438

BLAST of CmoCh12G000950 vs. ExPASy TrEMBL
Match: A0A6J1KID4 (uncharacterized protein LOC111496042 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496042 PE=4 SV=1)

HSP 1 Score: 783.5 bits (2022), Expect = 4.7e-223
Identity = 409/426 (96.01%), Postives = 414/426 (97.18%), Query Frame = 0

Query: 14  TSSNCVPESIECNYNTELQHQIVSIDPIGLLCREKINHEDAIQSPSSTGGGNSCLTTKIN 73
           T SNCVPESIE NYNTELQHQI+SIDPIGLLCREKINHEDAIQSPSSTGGGNSCLTTKIN
Sbjct: 8   TGSNCVPESIEGNYNTELQHQIISIDPIGLLCREKINHEDAIQSPSSTGGGNSCLTTKIN 67

Query: 74  HSSVDCFDDNAEGINAFMSSSGKKSSDSYVDKSVMECQMSTMIVCDKEINVNDVKDICID 133
           HSSVDCFDDNAEGINAFMSSSGKKSSDSYVDKSVMECQMS MIVCDKEINVNDVKDICID
Sbjct: 68  HSSVDCFDDNAEGINAFMSSSGKKSSDSYVDKSVMECQMSKMIVCDKEINVNDVKDICID 127

Query: 134 EGVPSLVNFIFRSTDEKSSYKTLPLNQNEGSIKEQKNSSEVLESIADNKKISLEDHFATD 193
           EGVPSLVNFIFRSTDEKSSYKTLPLNQNEGS+KEQKNSSEVLESIADNKKISLEDHFA+D
Sbjct: 128 EGVPSLVNFIFRSTDEKSSYKTLPLNQNEGSVKEQKNSSEVLESIADNKKISLEDHFASD 187

Query: 194 WSTHNDAKDLNQIEEAKLNQSEPQVPVQKLVRESHSSESLDSLGIQISSEKANSEDPASA 253
           WSTHNDAKDLNQIEEAKLNQSEPQV VQKLVRESHSSESLD+LGIQISSEKANSEDPASA
Sbjct: 188 WSTHNDAKDLNQIEEAKLNQSEPQVLVQKLVRESHSSESLDNLGIQISSEKANSEDPASA 247

Query: 254 FKSVESCNDNSALGTEAESPNENIPTQQPSAHNNEFEKGSTTLNLNSISPMVNGEEEHHG 313
           FKSVESCNDNSALGTEAES NENIPTQ PSA NNEFEKGSTTLNLNSISPM NGEEEHHG
Sbjct: 248 FKSVESCNDNSALGTEAESTNENIPTQHPSARNNEFEKGSTTLNLNSISPMANGEEEHHG 307

Query: 314 NINSDYPGPMTSSAGTQECYGSNDSAFGTQVSTSRLISSQTAHDSGESSFSALDPLASLV 373
           NI  D+PGPMTSSAGTQECYGSNDSAFGTQVSTSRLISSQTAHD GESSFSALDPLASLV
Sbjct: 308 NIKLDFPGPMTSSAGTQECYGSNDSAFGTQVSTSRLISSQTAHDCGESSFSALDPLASLV 367

Query: 374 TYSGPIAYSGSISLRSESSTTSTRSFAFPILQQSEWNSSPVKMVKAERRHYRKYRGWREG 433
           TYSGPIAYSGSISLRSESSTTSTRSFAFPIL QSEWNSSPVKMVKAERRHYRKYRGWREG
Sbjct: 368 TYSGPIAYSGSISLRSESSTTSTRSFAFPIL-QSEWNSSPVKMVKAERRHYRKYRGWREG 427

Query: 434 LLCCRF 440
           LLCCRF
Sbjct: 428 LLCCRF 432

BLAST of CmoCh12G000950 vs. ExPASy TrEMBL
Match: A0A6J1BS70 (uncharacterized protein LOC111005214 OS=Momordica charantia OX=3673 GN=LOC111005214 PE=4 SV=1)

HSP 1 Score: 540.4 bits (1391), Expect = 6.9e-150
Identity = 307/450 (68.22%), Postives = 355/450 (78.89%), Query Frame = 0

Query: 1   MKLESDLPFYSSMTSSNCVPESIECNYNT-ELQHQIVSIDPIGLLCREKINHEDAIQSPS 60
           MKLESD P Y S+TS  CVP+ +ECNY+T E Q+Q++S +PIGL C EKIN EDAIQS  
Sbjct: 1   MKLESDHPVYHSITSPKCVPKLLECNYDTLESQNQVMSKNPIGLSCPEKINQEDAIQSSY 60

Query: 61  STGGGNSCLTTKINHSSVDCFDDNAEGINAFMSSSGKKSSDSYVDKSVMECQMSTMIVCD 120
           STG  NSC  TK + SSVD FDDNA+GI+AF++ S KK SDSYVDKSVME QM   IVCD
Sbjct: 61  STGHENSCTGTKXSCSSVDGFDDNADGISAFVAPSSKKPSDSYVDKSVMEFQMPKTIVCD 120

Query: 121 KEINVNDVKDICIDEGVPSLVNFIFRSTDEKSSYKTLPLNQ--NEGSIKEQKNSSEVLES 180
           +EI+VNDVKDICID+G+ SL NF FRSTDEKS +K L L +  NE  IKE +NSS+V +S
Sbjct: 121 QEIDVNDVKDICIDDGLSSLENFFFRSTDEKSIFKILSLEEDPNESPIKEPENSSDVSKS 180

Query: 181 IADNKKISLEDHFATDWSTHNDAKDLNQIEEAKLNQSEPQVPVQKLVRESHSSESLDSLG 240
           IAD+KKISLEDHFA DW+TH+DAKDL QIEEA+L+  E +V +QKLVR+S  SE+L ++G
Sbjct: 181 IADDKKISLEDHFARDWTTHDDAKDLTQIEEAQLDLREAKVSLQKLVRKSCYSETLYNIG 240

Query: 241 IQISSEKANSEDPASAFKSVESCNDNSALGTEAESPNENIPTQQPSAHNNEFEKGSTTLN 300
           +QIS EKAN +D AS  KSV       ALG+ AESPN+N PT  P AHN+EFE GS TLN
Sbjct: 241 VQISGEKANLDDSASVSKSV-------ALGSSAESPNDNNPT-YPLAHNHEFENGSITLN 300

Query: 301 LNSISPMVNGEEEHHGNINSDYPGPMTSSAGTQECYGSNDSAFGTQVST--------SRL 360
            NS+SP+VNG EE+HGN   +YP P+ SS+ TQEC  S+ SA  TQVST        +RL
Sbjct: 301 FNSVSPVVNGGEENHGNTILNYPAPLASSSVTQECRQSSGSAVETQVSTNLEFRTSDARL 360

Query: 361 ISSQTAHDSGESSFSALDPLASLVTYSGPIAYSGSISLRSESSTTSTRSFAFPILQQSEW 420
           +SSQT HD GESSFSA+DPLASLVTYSGPIAYSGSISLRSESS  STRSFAFPIL QSEW
Sbjct: 361 VSSQTQHDIGESSFSAVDPLASLVTYSGPIAYSGSISLRSESSAASTRSFAFPIL-QSEW 420

Query: 421 NSSPVKMVKAERRHYRKYRGWREGLLCCRF 440
           NSSPVKMVKAERRHYRKYRGWREGLLCCRF
Sbjct: 421 NSSPVKMVKAERRHYRKYRGWREGLLCCRF 441

BLAST of CmoCh12G000950 vs. TAIR 10
Match: AT2G03810.1 (18S pre-ribosomal assembly protein gar2-related )

HSP 1 Score: 125.6 bits (314), Expect = 1.0e-28
Identity = 130/389 (33.42%), Postives = 178/389 (45.76%), Query Frame = 0

Query: 82  DNAEGINAFMSSSGKKSSDSYVDKSVMECQMSTMIVCDKEINVNDVKDICIDEGVPSLVN 141
           D +   +A + S  KK    Y+DK+V  C +  ++VC KE   + VKDIC+DEGVP    
Sbjct: 70  DTSHDCDANVDSPEKKDPVFYMDKNVTACDLPEIVVCYKENTYHIVKDICVDEGVPVQEK 129

Query: 142 FIFRSTDEKSSYKTLPLNQNEGSIKEQKNSSEVLESIADNKKISLEDHFATDWSTHND-- 201
           F+F   D   S  T  L + +   K   N SE   +     K+  +  F  D  T  D  
Sbjct: 130 FLFGEKDSVKSSSTEDLMKAD---KTNVNPSETKSAEDSISKVD-DSEFCNDHKTDRDVE 189

Query: 202 ---AKDLNQIEEAKLNQSEPQVPVQKLVRESHS-----------SESLDSLGI---QISS 261
               +D    E    N ++  + V + V+ S +             S D + I     S 
Sbjct: 190 ESSGEDFADAEGTSSNYNQEHLIVTEEVKASPTHGLSPSEIEPDENSKDEVAISQDNDSK 249

Query: 262 EKANSEDPASAFKSVESCNDNSALGTEAESPNENIPTQQPSAHNNEFEKGSTTLNLNSIS 321
           E     D  S     +S N ++     ++S  E  P+Q         E  +    L    
Sbjct: 250 ECLTLGDILSREDEQKSLNQDN---ISSDSHEEQSPSQLQDKEKRSLETTAIETELEKTE 309

Query: 322 PMVNGEEE---------HHGNINSDYP-GPMTSSAGTQECYGSNDSAFGTQVSTSRLISS 381
               GEE+            N   + P  P T +   Q C   N S    + S+SR    
Sbjct: 310 EPKQGEEKLSSVSTTTSQEPNKTCNEPEKPETENHHQQNCLVEN-SYEDDKFSSSRF--- 369

Query: 382 QTAHDSGESSFSALD--PLASLVTYSGPIAYSGSISLRSESSTTSTRSFAFPILQQSEWN 440
                 GE+SFSA D   ++  +TYSGPIAYSGS+S+RS++STTS RSFAFPIL QSEWN
Sbjct: 370 ------GETSFSAADSVSISGHITYSGPIAYSGSLSVRSDASTTSGRSFAFPIL-QSEWN 429

BLAST of CmoCh12G000950 vs. TAIR 10
Match: AT2G03810.2 (18S pre-ribosomal assembly protein gar2-related )

HSP 1 Score: 125.6 bits (314), Expect = 1.0e-28
Identity = 130/389 (33.42%), Postives = 178/389 (45.76%), Query Frame = 0

Query: 82  DNAEGINAFMSSSGKKSSDSYVDKSVMECQMSTMIVCDKEINVNDVKDICIDEGVPSLVN 141
           D +   +A + S  KK    Y+DK+V  C +  ++VC KE   + VKDIC+DEGVP    
Sbjct: 70  DTSHDCDANVDSPEKKDPVFYMDKNVTACDLPEIVVCYKENTYHIVKDICVDEGVPVQEK 129

Query: 142 FIFRSTDEKSSYKTLPLNQNEGSIKEQKNSSEVLESIADNKKISLEDHFATDWSTHND-- 201
           F+F   D   S  T  L + +   K   N SE   +     K+  +  F  D  T  D  
Sbjct: 130 FLFGEKDSVKSSSTEDLMKAD---KTNVNPSETKSAEDSISKVD-DSEFCNDHKTDRDVE 189

Query: 202 ---AKDLNQIEEAKLNQSEPQVPVQKLVRESHS-----------SESLDSLGI---QISS 261
               +D    E    N ++  + V + V+ S +             S D + I     S 
Sbjct: 190 ESSGEDFADAEGTSSNYNQEHLIVTEEVKASPTHGLSPSEIEPDENSKDEVAISQDNDSK 249

Query: 262 EKANSEDPASAFKSVESCNDNSALGTEAESPNENIPTQQPSAHNNEFEKGSTTLNLNSIS 321
           E     D  S     +S N ++     ++S  E  P+Q         E  +    L    
Sbjct: 250 ECLTLGDILSREDEQKSLNQDN---ISSDSHEEQSPSQLQDKEKRSLETTAIETELEKTE 309

Query: 322 PMVNGEEE---------HHGNINSDYP-GPMTSSAGTQECYGSNDSAFGTQVSTSRLISS 381
               GEE+            N   + P  P T +   Q C   N S    + S+SR    
Sbjct: 310 EPKQGEEKLSSVSTTTSQEPNKTCNEPEKPETENHHQQNCLVEN-SYEDDKFSSSRF--- 369

Query: 382 QTAHDSGESSFSALD--PLASLVTYSGPIAYSGSISLRSESSTTSTRSFAFPILQQSEWN 440
                 GE+SFSA D   ++  +TYSGPIAYSGS+S+RS++STTS RSFAFPIL QSEWN
Sbjct: 370 ------GETSFSAADSVSISGHITYSGPIAYSGSLSVRSDASTTSGRSFAFPIL-QSEWN 429

BLAST of CmoCh12G000950 vs. TAIR 10
Match: AT2G03810.3 (18S pre-ribosomal assembly protein gar2-related )

HSP 1 Score: 125.6 bits (314), Expect = 1.0e-28
Identity = 130/389 (33.42%), Postives = 178/389 (45.76%), Query Frame = 0

Query: 82  DNAEGINAFMSSSGKKSSDSYVDKSVMECQMSTMIVCDKEINVNDVKDICIDEGVPSLVN 141
           D +   +A + S  KK    Y+DK+V  C +  ++VC KE   + VKDIC+DEGVP    
Sbjct: 70  DTSHDCDANVDSPEKKDPVFYMDKNVTACDLPEIVVCYKENTYHIVKDICVDEGVPVQEK 129

Query: 142 FIFRSTDEKSSYKTLPLNQNEGSIKEQKNSSEVLESIADNKKISLEDHFATDWSTHND-- 201
           F+F   D   S  T  L + +   K   N SE   +     K+  +  F  D  T  D  
Sbjct: 130 FLFGEKDSVKSSSTEDLMKAD---KTNVNPSETKSAEDSISKVD-DSEFCNDHKTDRDVE 189

Query: 202 ---AKDLNQIEEAKLNQSEPQVPVQKLVRESHS-----------SESLDSLGI---QISS 261
               +D    E    N ++  + V + V+ S +             S D + I     S 
Sbjct: 190 ESSGEDFADAEGTSSNYNQEHLIVTEEVKASPTHGLSPSEIEPDENSKDEVAISQDNDSK 249

Query: 262 EKANSEDPASAFKSVESCNDNSALGTEAESPNENIPTQQPSAHNNEFEKGSTTLNLNSIS 321
           E     D  S     +S N ++     ++S  E  P+Q         E  +    L    
Sbjct: 250 ECLTLGDILSREDEQKSLNQDN---ISSDSHEEQSPSQLQDKEKRSLETTAIETELEKTE 309

Query: 322 PMVNGEEE---------HHGNINSDYP-GPMTSSAGTQECYGSNDSAFGTQVSTSRLISS 381
               GEE+            N   + P  P T +   Q C   N S    + S+SR    
Sbjct: 310 EPKQGEEKLSSVSTTTSQEPNKTCNEPEKPETENHHQQNCLVEN-SYEDDKFSSSRF--- 369

Query: 382 QTAHDSGESSFSALD--PLASLVTYSGPIAYSGSISLRSESSTTSTRSFAFPILQQSEWN 440
                 GE+SFSA D   ++  +TYSGPIAYSGS+S+RS++STTS RSFAFPIL QSEWN
Sbjct: 370 ------GETSFSAADSVSISGHITYSGPIAYSGSLSVRSDASTTSGRSFAFPIL-QSEWN 429

BLAST of CmoCh12G000950 vs. TAIR 10
Match: AT2G03810.4 (18S pre-ribosomal assembly protein gar2-related )

HSP 1 Score: 125.6 bits (314), Expect = 1.0e-28
Identity = 130/389 (33.42%), Postives = 178/389 (45.76%), Query Frame = 0

Query: 82  DNAEGINAFMSSSGKKSSDSYVDKSVMECQMSTMIVCDKEINVNDVKDICIDEGVPSLVN 141
           D +   +A + S  KK    Y+DK+V  C +  ++VC KE   + VKDIC+DEGVP    
Sbjct: 70  DTSHDCDANVDSPEKKDPVFYMDKNVTACDLPEIVVCYKENTYHIVKDICVDEGVPVQEK 129

Query: 142 FIFRSTDEKSSYKTLPLNQNEGSIKEQKNSSEVLESIADNKKISLEDHFATDWSTHND-- 201
           F+F   D   S  T  L + +   K   N SE   +     K+  +  F  D  T  D  
Sbjct: 130 FLFGEKDSVKSSSTEDLMKAD---KTNVNPSETKSAEDSISKVD-DSEFCNDHKTDRDVE 189

Query: 202 ---AKDLNQIEEAKLNQSEPQVPVQKLVRESHS-----------SESLDSLGI---QISS 261
               +D    E    N ++  + V + V+ S +             S D + I     S 
Sbjct: 190 ESSGEDFADAEGTSSNYNQEHLIVTEEVKASPTHGLSPSEIEPDENSKDEVAISQDNDSK 249

Query: 262 EKANSEDPASAFKSVESCNDNSALGTEAESPNENIPTQQPSAHNNEFEKGSTTLNLNSIS 321
           E     D  S     +S N ++     ++S  E  P+Q         E  +    L    
Sbjct: 250 ECLTLGDILSREDEQKSLNQDN---ISSDSHEEQSPSQLQDKEKRSLETTAIETELEKTE 309

Query: 322 PMVNGEEE---------HHGNINSDYP-GPMTSSAGTQECYGSNDSAFGTQVSTSRLISS 381
               GEE+            N   + P  P T +   Q C   N S    + S+SR    
Sbjct: 310 EPKQGEEKLSSVSTTTSQEPNKTCNEPEKPETENHHQQNCLVEN-SYEDDKFSSSRF--- 369

Query: 382 QTAHDSGESSFSALD--PLASLVTYSGPIAYSGSISLRSESSTTSTRSFAFPILQQSEWN 440
                 GE+SFSA D   ++  +TYSGPIAYSGS+S+RS++STTS RSFAFPIL QSEWN
Sbjct: 370 ------GETSFSAADSVSISGHITYSGPIAYSGSLSVRSDASTTSGRSFAFPIL-QSEWN 429

BLAST of CmoCh12G000950 vs. TAIR 10
Match: AT1G13650.2 (BEST Arabidopsis thaliana protein match is: 18S pre-ribosomal assembly protein gar2-related (TAIR:AT2G03810.4); Has 3688 Blast hits to 1629 proteins in 255 species: Archae - 22; Bacteria - 222; Metazoa - 684; Fungi - 292; Plants - 62; Viruses - 14; Other Eukaryotes - 2392 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 6.4e-07
Identity = 36/91 (39.56%), Postives = 49/91 (53.85%), Query Frame = 0

Query: 335 SNDSAFGTQVSTSRLISSQTAHDSGESSFSALDPLASLVTYSGPIAYSGSISLRSESSTT 394
           + +S        + L+     +  GE SF         +TY GP++ S ++S+RS+   T
Sbjct: 102 TEESEADNSCDDNNLLKRNLPNGFGEISFCEAKSSLDYITYCGPLSGSENLSIRSDG--T 161

Query: 395 STRSFAFPILQQSEWNSSPVKMVKAERRHYR 426
           S  SFA PIL QSEWNSSPV+M KAE    R
Sbjct: 162 SASSFALPIL-QSEWNSSPVRMGKAEETQLR 189

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GGY01.2e-242100.00uncharacterized protein LOC111454119 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1GH171.2e-23499.77uncharacterized protein LOC111454119 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1KPB63.0e-23096.13uncharacterized protein LOC111496042 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1KID44.7e-22396.01uncharacterized protein LOC111496042 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1BS706.9e-15068.22uncharacterized protein LOC111005214 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
Match NameE-valueIdentityDescription
AT2G03810.11.0e-2833.4218S pre-ribosomal assembly protein gar2-related [more]
AT2G03810.21.0e-2833.4218S pre-ribosomal assembly protein gar2-related [more]
AT2G03810.31.0e-2833.4218S pre-ribosomal assembly protein gar2-related [more]
AT2G03810.41.0e-2833.4218S pre-ribosomal assembly protein gar2-related [more]
AT1G13650.26.4e-0739.56BEST Arabidopsis thaliana protein match is: 18S pre-ribosomal assembly protein g... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 226..335
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 318..335
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 226..304
NoneNo IPR availablePANTHERPTHR33914:SF218S PRE-RIBOSOMAL ASSEMBLY PROTEIN GAR2-LIKE PROTEINcoord: 56..439
IPR040378Protein BREAKING OF ASYMMETRY IN THE STOMATAL LINEAGEPANTHERPTHR3391418S PRE-RIBOSOMAL ASSEMBLY PROTEIN GAR2-LIKE PROTEINcoord: 56..439

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G000950.1CmoCh12G000950.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009786 regulation of asymmetric cell division