CmoCh12G000880 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G000880
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Transcription factor CAULIFLOWER
Location	Cmo_Chr12: 477126 .. 481649 (+)
RNA-Seq Expression	CmoCh12G000880
Synteny	CmoCh12G000880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTTTTTCATTTCATTCGGACCCCTTATCTTTCTGTTCTTGTGGTTTGTTTCCCTTTTTCGTGTGTTGTTTTGGGAACTGGGGTTGGTTTGAAAACACAGAGAAAAAAGAAGGGTTTTTAGGCAAAAAAAAAGGGGGGTTTTTTGGGGTTGGATTGTAAAAATGGGAAGAGGTAGGGTTCAACTGAAAAGAATTGAGAACAAAATAAACAGGCAGGTTACTTTCTCCAAAAGGAAAGCTGGTTTGCTGAAGAAGGCTCATGAAATCTCTGTTCTCTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCCCACAAAGGAAAGCTCTTTGAATACTCCTCTGATTCCAGGTCACCCCCCATTATTATTATTTTTTTTGTGTCTTTTTTTTGCTAAATTTAATGTTTTTGTTGTGTTTTTAGGGTTTTTAATGCAAACCCATTTAATTTCTTCATGTTTTCTATAATGGGTCTCTCTTATTTTTTGTTTTTTGTTTGTTTTTTTTTTTTTTTACCTTAAATTTCTTTTCAATTTTGGTTATAAGAATGTGTTCATCTTTGGATTCTCCCTTTTTCACCCCATGGCCCCAAATATGGCTATTTCTTCTGATTTCCTGCTCCTCACTGCCACTTAACTCACACTTCCTTTATCGATTAGGGTTTTTCTTTGTATCGTCATGCCCTATTCGCTTTAACTTTTGGGTTCGGTGGTGATTTTGTTACACCGATCTAGCAAATCCCATAAAGCTTTCGTCTCCGACCCATTAATTTGTTTTTTTTTTCTCTCTCTCTACACGTAACACCGACTTTTTTTTTCTTGAAATTCAATAAAATCGTAAAATCGAGCGAAAAGTTACCATGAAACTTGGGTTTTTCTTAAGGCTTGTCATGATCGAGTGCCTAAGCTTGTGGGTTGAGTTGTGATTTAATAAAAGCATGAAACTTTTAGCTTGCTTTCTATGTTAGCTCGAGCGGGTTCTTTGATTTCGATCTTGGATCAAAATGTTTTGAATTTTTTTTAAATGGGTTATTTTCGATCGAGTACAATAAGGCTTGTGTTTTCCTTACGGCTTGTTATGATCGAGTACTTAAGCTAGTGGGTTGAGTCGTGATTTAATTAGATCTCGATTTAATGCAAGCGTGAAACTTTTAGCTTGCTTTCTATGTTAGCTCGAGCGGGTTCTTGGATTTCAATCTTAGATCAAAATTTTTTGGATTTTTTTGAAATGGGTTGTTTTCGATTGAGTACAATGAGGCTTGAGTTTTCCTTACGGCTTGTTATGATCGAGTATTTAAGCTAGTGGGTTGAGTCGTGATTTAATTAGATCTCGATTTAATGAAAGCTTGAAACTTTTAGCTTGTTTTCTACGTTAACCCGAGCGGGTTCTTCGATTTCGATCTTGGATCGAACCGTTTTGGATTTTTTGAATTGGGTTATTTTTGTATAGTGGAATTGATAATTTCCCCATGAATTTGAGCTTAGGTTTTGTACTTGTGAAGTGGTTGGTAGCAGAACAAAAGAAAGTGAACAGTTGTTGAAGCATGGGAATGAGGATCTAGTTTCCTCTACCCATTTATTTATTTGCATGTGTTCTTCATATACAGTACTTAGACAGTGGTTTGGTAATGATTTTTAAGCCTATAGTTAATTATATATATATATATATATTCAATAGCTTATATTATAAATTATAATGTGTATGAAATTCTTAGGTTTTTAAGTTAAAGGTAAGTCAAATATGTTGTAACATAATGTGTTAAATTGAATTATGACAAAAATAATGAAGTAATTTGAGGAACAGAACAGTAACCTAGTTATCTAGACATGTTTTTTTTAATGTTATTATTGTTTTATTTGTAAAATAATAGGTAAATATTGTTTTTTTGTTTATTGTTCTCTATAATTTATTATTTTTCAACTAGTTTATTTAAAAATAGAATATTATTGAGAAAACAATTTGAAACTAAGGAACGTATCATGTTTTGAAATTAATCAAGGGTTTGTCGGGGGATTTTTATGTTTTTCGTTTATTATAATTATTTTTGTGGAAAGATAAAAATATTCAAGAAACTTAGCTTTTATTAGCAAAGAATTACTGTTTTAATCGTCAAAATTAATTAAAAAAAATATTTTTTATTAATGATTTTGAAAATTGTTTGAAAATATTAAGCAAAACATCCTTAAAATTTACATGTTTTTATGTCATCTCGTATGTTTCTCTGTCAAAAAAACAAAGAAGGAAATGATATTACATGTTATGTTTTATTTTTTTACATGATTATTTGTCAATTTGAGCATAACTCAATTAGTTAACGTATATATATAATTGATTTAGAGGTCAGAGGTATGAATCTCTCGTTTGTACTTATTATTAACTAAAAAAGAATTCATGGCCTTTATTTTATTTTATTAATTTAATAATATATGAACTGAGAGATTCAAATCTCGAACTTTCACGTCGAGAATACATAGCTCGACCAATTGAGCTATACACCGACTTATCACATTGATTTTGCACGTGATCTTTATACACATTGATGAATTATTTTACTCAAATTTCATTTTCCTTCTTCTCTCACACCAAATTTAGGGCTTTCTTCAAGAACAATATAAAATTCTCAACTTTTGGTTGAGAGAAAATATAAACCCTAACCCTAATTGAAGCATTCATGAGTGTTCTAATTCAAAGTAAGAGAGAGAGAGAGATGATTTGATGGGAAAGATGTTATTCTTGTCTAGGACAAGACATGATATAGAACAGTAACACTTAGTGTTTATATGCTTCAAATCTAGGCCCTAACTTTCAAAACCCCTTTGTTATATATAATATTTGGCTGTCAATTCAGCTTAAATCATTTGTAACAGTGATTGGTTGATGTTTTATATTAATGGTTGCTTCTTCTGTGAGAGATTGATACTCAGAGATTGAATTGATGGAGAGAGAGAGATATCATTTAATTTTGAGATCATTATCTGTACTGTTCATAGCACCAATTTTGATTTTCTTTTTCAAATTTGTTTATGATATTAGTTTGAAATCTTGTTTTTTTGGCAAATTTTGGATTAGGGTTTGTGAGAAATTTATGTTTCGAAAACAAAGAAACATGATATCGAGTGATTGAGCTGAAATTAGGGTGAAATTTAGTTTTCGATTTGGAAATAGATCTTGTATGGGTTAAGTTGCTCGAGGTTGTTTCGATTCGTGATCTTGGTTTTTATTGAGCAGATTATTTTAATTCAATAATGTGACGTTGAGATTCGAGCTTCTAACTTAATCACTCTGCTTATGCGTTTGATTTTACAAATTTTGTTGTTGCAGTATGGAGAAAATACTCGAACGATATGAGCGATATTCATATGTGGGCAGGCAACAAATTGCAGCTACTGAATCTGAATTTTCACAGGAAAATTGGACTCTCGAGTATTATAGACTCAAATCGAGAGTCGAACTCTTACAAAGAAACAACAGGTAAGTTCGTATAACGTTTTGAACGTCAAGGTCTCGATCTCTATCTCTCGTTATTAATATCGATATCGTGTGGATGATAATTGAAGTCATTACATGGGAGAAGATTTGGATTCATTAAGCGTCAAAGAACTGCAAAACTTGGAGCAACAAATCGACACTGCACTCAAACATGTTCGTTCGAGGAAAGTAAGGATGTTTGAATTTCATGTTTTTATGTTTTTTTTTTTTTTTTTTTTTTTTGTAATGAATAATATATTTTGGAATTTTTGTTTCAGAACCAACTCATGCATGATTCCATCTCTGCTCTTCAGAGAAAGGCAAATTTCTCTTACTTTTTTCATTTTTTTTAAATCTATAAAATAATTTAATTTTTCGATTTTGTTCTAATTAATTTACCTCACATTCTCATTTATTTTTACCAGGAACGAGCAATTCAGGAACAAAACGCTCTCCTGGCAAAGCAGGTGTTCGTAACATTTAGTTTAAAACGCTATTTTTTTCGTTTTAGCTTTAGCTTACGATGCTTAATTATAATTTATGTTCGGTTAAATGAAATTAAGATCAAGGAGAAGGAGAAGAGTGTAGCAATGGCTCAGCAGGCCGAGTGGGAGCAGCAGCAGCAACATGGTTACAATGCACTGTCTTTCTTGTTCCCATCAGCTCCTCACCCGTCTCTAAACATCGGGTAATCCTTCACTAGTTTTTCGTGTTTGGAATGACTTTTGAAACTCGATAACGTTACGTGTTCTTTGCCTTTTGAACGTATAGGCTTGCGAGCTTTGATGGTCACCTGTGAATCCCATTGCACGTTGGGAGATTCGAGCGATCGGGAAGAAGACGGTGACGGTGACGGTGACGGGGGCGGGTTGAATAATGGAAAATGGAATGGATTAATTATAACCCATATGTGTAATGGATGGGTAATATGTATGGAGGGTTTGTGGTTGTGGAGGTTTTGTTGTGTTAAGTGAAAGACAATATATGAACTACTTTTTGTTGTGTGTTGTTATTTTGTGGTGATATTGTTGTGGCCAAATAAAGTTGTTTCGTTCCCAAG

mRNA sequence

TCTTTTTTTCATTTCATTCGGACCCCTTATCTTTCTGTTCTTGTGGTTTGTTTCCCTTTTTCGTGTGTTGTTTTGGGAACTGGGGTTGGTTTGAAAACACAGAGAAAAAAGAAGGGTTTTTAGGCAAAAAAAAAGGGGGGTTTTTTGGGGTTGGATTGTAAAAATGGGAAGAGGTAGGGTTCAACTGAAAAGAATTGAGAACAAAATAAACAGGCAGGTTACTTTCTCCAAAAGGAAAGCTGGTTTGCTGAAGAAGGCTCATGAAATCTCTGTTCTCTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCCCACAAAGGAAAGCTCTTTGAATACTCCTCTGATTCCAGTATGGAGAAAATACTCGAACGATATGAGCGATATTCATATGTGGGCAGGCAACAAATTGCAGCTACTGAATCTGAATTTTCACAGGAAAATTGGACTCTCGAGTATTATAGACTCAAATCGAGAGTCGAACTCTTACAAAGAAACAACAGTCATTACATGGGAGAAGATTTGGATTCATTAAGCGTCAAAGAACTGCAAAACTTGGAGCAACAAATCGACACTGCACTCAAACATGAACGAGCAATTCAGGAACAAAACGCTCTCCTGGCAAAGCAGATCAAGGAGAAGGAGAAGAGTGTAGCAATGGCTCAGCAGGCCGAGTGGGAGCAGCAGCAGCAACATGGTTACAATGCACTGTCTTTCTTGTTCCCATCAGCTCCTCACCCGTCTCTAAACATCGGGCTTGCGAGCTTTGATGGTCACCTGTGAATCCCATTGCACGTTGGGAGATTCGAGCGATCGGGAAGAAGACGGTGACGGTGACGGTGACGGGGGCGGGTTGAATAATGGAAAATGGAATGGATTAATTATAACCCATATGTGTAATGGATGGGTAATATGTATGGAGGGTTTGTGGTTGTGGAGGTTTTGTTGTGTTAAGTGAAAGACAATATATGAACTACTTTTTGTTGTGTGTTGTTATTTTGTGGTGATATTGTTGTGGCCAAATAAAGTTGTTTCGTTCCCAAG

Coding sequence (CDS)

ATGGGAAGAGGTAGGGTTCAACTGAAAAGAATTGAGAACAAAATAAACAGGCAGGTTACTTTCTCCAAAAGGAAAGCTGGTTTGCTGAAGAAGGCTCATGAAATCTCTGTTCTCTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCCCACAAAGGAAAGCTCTTTGAATACTCCTCTGATTCCAGTATGGAGAAAATACTCGAACGATATGAGCGATATTCATATGTGGGCAGGCAACAAATTGCAGCTACTGAATCTGAATTTTCACAGGAAAATTGGACTCTCGAGTATTATAGACTCAAATCGAGAGTCGAACTCTTACAAAGAAACAACAGTCATTACATGGGAGAAGATTTGGATTCATTAAGCGTCAAAGAACTGCAAAACTTGGAGCAACAAATCGACACTGCACTCAAACATGAACGAGCAATTCAGGAACAAAACGCTCTCCTGGCAAAGCAGATCAAGGAGAAGGAGAAGAGTGTAGCAATGGCTCAGCAGGCCGAGTGGGAGCAGCAGCAGCAACATGGTTACAATGCACTGTCTTTCTTGTTCCCATCAGCTCCTCACCCGTCTCTAAACATCGGGCTTGCGAGCTTTGATGGTCACCTGTGA

Protein sequence

MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSDSSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLDSLSVKELQNLEQQIDTALKHERAIQEQNALLAKQIKEKEKSVAMAQQAEWEQQQQHGYNALSFLFPSAPHPSLNIGLASFDGHL

Homology

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BLAST of CmoCh12G000880 vs. ExPASy Swiss-Prot
Match: Q6E6S7 (Agamous-like MADS-box protein AP1 OS=Vitis vinifera OX=29760 GN=AP1 PE=2 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.0e-65
Identity = 146/215 (67.91%), Postives = 167/215 (77.67%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKR+ GLLKKAHEISVLCDAEVALIVFS KGKLFEYS+D
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTD 60

Query: 61  SSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLD 120
           S MEKIL+RYERYSY  R Q+ AT+ E SQ NW+LEY +LK+++ELLQR+  H++GEDLD
Sbjct: 61  SCMEKILDRYERYSYAER-QLTATDPE-SQGNWSLEYSKLKAKIELLQRSQRHFLGEDLD 120

Query: 121 SLSVKELQNLEQQIDTALKH-------------------ERAIQEQNALLAKQIKEKEKS 180
           SLS+KELQNLEQQ+DTALKH                   E+A+QEQN +LAK+IKEKEK+
Sbjct: 121 SLSLKELQNLEQQLDTALKHIRSRKNQLMYESISELQRKEKAMQEQNNMLAKEIKEKEKT 180

Query: 181 VAMAQQAEWEQQQQHGYNALSFLFPSAPHPSLNIG 197
           V  AQQ  WE QQ HG N  SFL P    P LN+G
Sbjct: 181 V--AQQTHWE-QQNHGLNTSSFLLPQ-QLPCLNMG 209

[Close]

BLAST of CmoCh12G000880 vs. ExPASy Swiss-Prot
Match: Q96355 (Floral homeotic protein APETALA 1-1 OS=Brassica oleracea var. italica OX=36774 GN=1AP1 PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 3.7e-63
Identity = 142/227 (62.56%), Postives = 167/227 (73.57%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKR+AGL KKAHEISVLCDAEVAL+VFSHKGKLFEYS+D
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRRAGLFKKAHEISVLCDAEVALVVFSHKGKLFEYSTD 60

Query: 61  SSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLD 120
           S MEKILERYERYSY  RQ I A ES+ +  NW++EY RLK+++ELL+RN  HY+GEDL 
Sbjct: 61  SCMEKILERYERYSYAERQLI-APESDVN-TNWSMEYNRLKAKIELLERNQRHYLGEDLQ 120

Query: 121 SLSVKELQNLEQQIDTALKH-------------------ERAIQEQNALLAKQIKEKEKS 180
           ++S KELQNLEQQ+DTALKH                   E+AIQEQN++L+KQIKE+EK 
Sbjct: 121 AMSPKELQNLEQQLDTALKHIRSRKNQLMYDSVNELQRKEKAIQEQNSMLSKQIKEREK- 180

Query: 181 VAMAQQAEWEQQQQHGYNALS------------FLFPSAPHPSLNIG 197
           V MAQQ +W+ QQ HG N  S            ++    P P LN+G
Sbjct: 181 VLMAQQEQWD-QQNHGQNMPSPPPPQQHQIQHPYMLSHQPSPFLNMG 223

[Close]

BLAST of CmoCh12G000880 vs. ExPASy Swiss-Prot
Match: B4YPV4 (Floral homeotic protein APETALA 1 C OS=Brassica oleracea var. alboglabra OX=3714 GN=AP1C PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 3.7e-63
Identity = 142/227 (62.56%), Postives = 167/227 (73.57%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKR+AGL KKAHEISVLCDAEVAL+VFSHKGKLFEYS+D
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRRAGLFKKAHEISVLCDAEVALVVFSHKGKLFEYSTD 60

Query: 61  SSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLD 120
           S MEKILERYERYSY  RQ I A ES+ +  NW++EY RLK+++ELL+RN  HY+GEDL 
Sbjct: 61  SCMEKILERYERYSYAERQLI-APESDVN-TNWSMEYNRLKAKIELLERNQRHYLGEDLQ 120

Query: 121 SLSVKELQNLEQQIDTALKH-------------------ERAIQEQNALLAKQIKEKEKS 180
           ++S KELQNLEQQ+DTALKH                   E+AIQEQN++L+KQIKE+EK 
Sbjct: 121 AMSPKELQNLEQQLDTALKHIRSRKNQLMYDSVNELQRKEKAIQEQNSMLSKQIKEREK- 180

Query: 181 VAMAQQAEWEQQQQHGYNALS------------FLFPSAPHPSLNIG 197
           V MAQQ +W+ QQ HG N  S            ++    P P LN+G
Sbjct: 181 VLMAQQEQWD-QQNHGQNMPSPPPPQQHQIQHPYMLSHQPSPFLNMG 223

[Close]

BLAST of CmoCh12G000880 vs. ExPASy Swiss-Prot
Match: Q8GTF4 (Floral homeotic protein APETALA 1 C OS=Brassica oleracea var. botrytis OX=3715 GN=AP1C PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 3.7e-63
Identity = 142/227 (62.56%), Postives = 167/227 (73.57%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKR+AGL KKAHEISVLCDAEVAL+VFSHKGKLFEYS+D
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRRAGLFKKAHEISVLCDAEVALVVFSHKGKLFEYSTD 60

Query: 61  SSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLD 120
           S MEKILERYERYSY  RQ I A ES+ +  NW++EY RLK+++ELL+RN  HY+GEDL 
Sbjct: 61  SCMEKILERYERYSYAERQLI-APESDVN-TNWSMEYNRLKAKIELLERNQRHYLGEDLQ 120

Query: 121 SLSVKELQNLEQQIDTALKH-------------------ERAIQEQNALLAKQIKEKEKS 180
           ++S KELQNLEQQ+DTALKH                   E+AIQEQN++L+KQIKE+EK 
Sbjct: 121 AMSPKELQNLEQQLDTALKHIRSRKNQLMYDSVNELQRKEKAIQEQNSMLSKQIKEREK- 180

Query: 181 VAMAQQAEWEQQQQHGYNALS------------FLFPSAPHPSLNIG 197
           V MAQQ +W+ QQ HG N  S            ++    P P LN+G
Sbjct: 181 VLMAQQEQWD-QQNHGQNMPSPPPPQQHQIQHPYMLSHQPSPFLNMG 223

[Close]

BLAST of CmoCh12G000880 vs. ExPASy Swiss-Prot
Match: Q41276 (Floral homeotic protein APETALA 1 OS=Sinapis alba OX=3728 GN=AP1 PE=2 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 8.3e-63
Identity = 140/225 (62.22%), Postives = 167/225 (74.22%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKR+AGLLKKAHEISVLCDAEVAL+VFSHKGKLFEYS+D
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTD 60

Query: 61  SSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLD 120
           S MEKILERYERYSY  RQ I A ES+ +  NW++EY RLK+++ELL+RN  HY+GEDL 
Sbjct: 61  SCMEKILERYERYSYAERQLI-APESDVN-TNWSMEYNRLKAKIELLERNQRHYLGEDLQ 120

Query: 121 SLSVKELQNLEQQIDTALKH-------------------ERAIQEQNALLAKQIKEKEKS 180
           ++S KELQNLEQQ+DTALKH                   E+AIQEQN++L+KQIKE+EK 
Sbjct: 121 AMSSKELQNLEQQLDTALKHIRSRKNQLMHDSINELQRKEKAIQEQNSMLSKQIKEREK- 180

Query: 181 VAMAQQAEWEQQQQHGYN----------ALSFLFPSAPHPSLNIG 197
           +  AQQ +W+ QQ HG+N             ++    P P LN+G
Sbjct: 181 ILRAQQEQWD-QQNHGHNMPPPPPPQQIQHPYMLSHQPSPFLNMG 221

[Close]

BLAST of CmoCh12G000880 vs. ExPASy TrEMBL
Match: A0A6J1GHU4 (truncated transcription factor CAULIFLOWER A-like OS=Cucurbita moschata OX=3662 GN=LOC111454319 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 3.6e-101
Identity = 204/223 (91.48%), Postives = 204/223 (91.48%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60

Query: 61  SSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLD 120
           SSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLD
Sbjct: 61  SSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLD 120

Query: 121 SLSVKELQNLEQQIDTALKH-------------------ERAIQEQNALLAKQIKEKEKS 180
           SLSVKELQNLEQQIDTALKH                   ERAIQEQNALLAKQIKEKEKS
Sbjct: 121 SLSVKELQNLEQQIDTALKHVRSRKNQLMHDSISALQRKERAIQEQNALLAKQIKEKEKS 180

Query: 181 VAMAQQAEWEQQQQHGYNALSFLFPSAPHPSLNIGLASFDGHL 205
           VAMAQQAEWEQQQQHGYNALSFLFPSAPHPSLNIGLASFDGHL
Sbjct: 181 VAMAQQAEWEQQQQHGYNALSFLFPSAPHPSLNIGLASFDGHL 223

[Close]

BLAST of CmoCh12G000880 vs. ExPASy TrEMBL
Match: A0A6J1KPM9 (truncated transcription factor CAULIFLOWER A-like OS=Cucurbita maxima OX=3661 GN=LOC111496100 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 1.0e-100
Identity = 203/223 (91.03%), Postives = 203/223 (91.03%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60

Query: 61  SSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLD 120
           SSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLD
Sbjct: 61  SSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLD 120

Query: 121 SLSVKELQNLEQQIDTALKH-------------------ERAIQEQNALLAKQIKEKEKS 180
           SLSVKELQNLEQQIDTALKH                   ERAIQEQNALLAKQIKEKEKS
Sbjct: 121 SLSVKELQNLEQQIDTALKHVRSRKNQLMHDSISALQRKERAIQEQNALLAKQIKEKEKS 180

Query: 181 VAMAQQAEWEQQQQHGYNALSFLFPSAPHPSLNIGLASFDGHL 205
            AMAQQAEWEQQQQHGYNALSFLFPSAPHPSLNIGLASFDGHL
Sbjct: 181 AAMAQQAEWEQQQQHGYNALSFLFPSAPHPSLNIGLASFDGHL 223

[Close]

BLAST of CmoCh12G000880 vs. ExPASy TrEMBL
Match: A0A6J1BSN0 (truncated transcription factor CAULIFLOWER A-like OS=Momordica charantia OX=3673 GN=LOC111004981 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 4.7e-93
Identity = 190/224 (84.82%), Postives = 200/224 (89.29%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALI+FSHKGKLFEY++D
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYATD 60

Query: 61  SSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLD 120
           SSMEKILERYERYSYVGRQQIA +E+EFSQENWTLEYYRLKS+VELLQRNNSHYMGEDLD
Sbjct: 61  SSMEKILERYERYSYVGRQQIALSETEFSQENWTLEYYRLKSKVELLQRNNSHYMGEDLD 120

Query: 121 SLSVKELQNLEQQIDTALKH-------------------ERAIQEQNALLAKQIKEKEKS 180
           SLSVKELQNLEQQIDTALKH                   ERAIQEQNALLAKQIKEKEKS
Sbjct: 121 SLSVKELQNLEQQIDTALKHIRSRKNQLMYDSISALQRKERAIQEQNALLAKQIKEKEKS 180

Query: 181 VAMAQQAEWE--QQQQHGYNALSFLFPSAPHPSLNIGLASFDGH 204
           VAMAQQAEWE  QQQ HGY+ALSFLFP+ PHPSLNIGLASF+G+
Sbjct: 181 VAMAQQAEWEHQQQQHHGYSALSFLFPTPPHPSLNIGLASFEGN 224

[Close]

BLAST of CmoCh12G000880 vs. ExPASy TrEMBL
Match: A0A1S3BCQ3 (truncated transcription factor CAULIFLOWER A OS=Cucumis melo OX=3656 GN=LOC103488455 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.3e-90
Identity = 184/222 (82.88%), Postives = 193/222 (86.94%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60

Query: 61  SSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLD 120
           SSMEKILERYERYS+VGRQQ AA+ES FS ENWTLEYYRLKS+VELLQRNNSHY+GEDLD
Sbjct: 61  SSMEKILERYERYSFVGRQQNAASESHFSHENWTLEYYRLKSKVELLQRNNSHYVGEDLD 120

Query: 121 SLSVKELQNLEQQIDTALKHERA-------------------IQEQNALLAKQIKEKEKS 180
           SLSVKELQNLEQQIDTALKH R+                   I+E NA LAK+IKEKEKS
Sbjct: 121 SLSVKELQNLEQQIDTALKHVRSRKNQLMFESITDLQKKVRTIEENNAQLAKEIKEKEKS 180

Query: 181 VAMAQQAEWEQQQQHGYNALSFLFPSAPHPSLNIGLASFDGH 204
           VA+AQQAEWE QQ HGY+ALSFLFP  PHPSLNIGLASFDGH
Sbjct: 181 VALAQQAEWEHQQHHGYSALSFLFPPPPHPSLNIGLASFDGH 222

[Close]

BLAST of CmoCh12G000880 vs. ExPASy TrEMBL
Match: A0A1U8M7T9 (truncated transcription factor CAULIFLOWER D-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107934869 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 7.8e-72
Identity = 155/205 (75.61%), Postives = 177/205 (86.34%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKR+AGLLKKAHEISVLCDAEVALIVFSHKGKLFEYS+D
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSTD 60

Query: 61  SSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLD 120
           S MEKILERYERYSY  R Q+ ATES+  Q NW++EY RLK++V+LLQ+N+ HYMGEDLD
Sbjct: 61  SCMEKILERYERYSYAER-QLVATESQ-PQGNWSMEYNRLKAKVDLLQKNHRHYMGEDLD 120

Query: 121 SLSVKELQNLEQQIDTALKH-------ERAIQEQNALLAKQIKEKEKSVAMAQQAEW-EQ 180
           SLS+KELQNLEQQ+DTA+KH       E+AIQEQNA+LAKQIK++EK+VA AQQ++W +Q
Sbjct: 121 SLSLKELQNLEQQLDTAIKHIRSKKRKEKAIQEQNAMLAKQIKDREKTVAQAQQSQWGQQ 180

Query: 181 QQQHGYNA-LSFLFPSAPHPSLNIG 197
           QQQ G N   SFL P  PHP LNIG
Sbjct: 181 QQQLGLNTPTSFLLPQPPHPCLNIG 203

[Close]

BLAST of CmoCh12G000880 vs. TAIR 10
Match: AT1G69120.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 239.2 bits (609), Expect = 2.9e-63
Identity = 140/227 (61.67%), Postives = 167/227 (73.57%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKR+AGLLKKAHEISVLCDAEVAL+VFSHKGKLFEYS+D
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTD 60

Query: 61  SSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLD 120
           S MEKILERYERYSY  RQ I A ES+ +  NW++EY RLK+++ELL+RN  HY+GEDL 
Sbjct: 61  SCMEKILERYERYSYAERQLI-APESDVN-TNWSMEYNRLKAKIELLERNQRHYLGEDLQ 120

Query: 121 SLSVKELQNLEQQIDTALKH-------------------ERAIQEQNALLAKQIKEKEKS 180
           ++S KELQNLEQQ+DTALKH                   E+AIQEQN++L+KQIKE+EK 
Sbjct: 121 AMSPKELQNLEQQLDTALKHIRTRKNQLMYESINELQKKEKAIQEQNSMLSKQIKEREK- 180

Query: 181 VAMAQQAEWEQQQQHGYN------------ALSFLFPSAPHPSLNIG 197
           +  AQQ +W+QQ Q G+N               ++    P P LN+G
Sbjct: 181 ILRAQQEQWDQQNQ-GHNMPPPLPPQQHQIQHPYMLSHQPSPFLNMG 223

[Close]

BLAST of CmoCh12G000880 vs. TAIR 10
Match: AT1G26310.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 217.2 bits (552), Expect = 1.2e-56
Identity = 118/191 (61.78%), Postives = 147/191 (76.96%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRV+LKRIENKINRQVTFSKR+ GLLKKA EISVLCDAEV+LIVFSHKGKLFEYSS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSE 60

Query: 61  SSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLD 120
           S MEK+LERYERYSY  RQ IA      +Q NW++EY RLK+++ELL+RN  HY+GE+L+
Sbjct: 61  SCMEKVLERYERYSYAERQLIAPDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEELE 120

Query: 121 SLSVKELQNLEQQIDTALKH-------------------ERAIQEQNALLAKQIKEKEKS 173
            +S+K+LQNLEQQ++TALKH                   E+ IQE+N++L KQIKE+E +
Sbjct: 121 PMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEIQEENSMLTKQIKERE-N 180

[Close]

BLAST of CmoCh12G000880 vs. TAIR 10
Match: AT5G60910.1 (AGAMOUS-like 8 )

HSP 1 Score: 195.7 bits (496), Expect = 3.7e-50
Identity = 116/205 (56.59%), Postives = 145/205 (70.73%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQLKRIENKINRQVTFSKR++GLLKKAHEISVLCDAEVALIVFS KGKLFEYS+D
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTD 60

Query: 61  SSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLD 120
           S ME+ILERY+RY Y  +Q +    S+   ENW LE+ +LK+RVE+L++N  ++MGEDLD
Sbjct: 61  SCMERILERYDRYLYSDKQLVGRDVSQ--SENWVLEHAKLKARVEVLEKNKRNFMGEDLD 120

Query: 121 SLSVKELQNLEQQIDTAL-------------------KHERAIQEQNALLAKQIKEKEKS 180
           SLS+KELQ+LE Q+D A+                   K ++A+Q+ N  L K+IKE+EK 
Sbjct: 121 SLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNSLLKKIKEREK- 180

Query: 181 VAMAQQAEWEQQQQHGYNALSFLFP 187
               +  + E Q     N+ S L P
Sbjct: 181 ----KTGQQEGQLVQCSNSSSVLLP 198

[Close]

BLAST of CmoCh12G000880 vs. TAIR 10
Match: AT3G30260.1 (AGAMOUS-like 79 )

HSP 1 Score: 159.1 bits (401), Expect = 3.8e-39
Identity = 94/165 (56.97%), Postives = 123/165 (74.55%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRVQL+RIENKI RQVTFSKR+ GL+KKA EISVLCDAEVALIVFS KGKLFEYS+ 
Sbjct: 1   MGRGRVQLRRIENKIRRQVTFSKRRTGLVKKAQEISVLCDAEVALIVFSPKGKLFEYSAG 60

Query: 61  SSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLD 120
           SSME+IL+RYER +Y G  Q   T +  SQ   + E  +L   +++LQR+  H  GE++D
Sbjct: 61  SSMERILDRYERSAYAG--QDIPTPNLDSQGECSTECSKLLRMIDVLQRSLRHLRGEEVD 120

Query: 121 SLSVKELQNLEQQIDTALKHERAIQEQNALLAK---QIKEKEKSV 163
            LS+++LQ +E Q+DTALK  R+   +N L+ +   Q+++KEK +
Sbjct: 121 GLSIRDLQGVEMQLDTALKKTRS--RKNQLMVESIAQLQKKEKEL 161

[Close]

BLAST of CmoCh12G000880 vs. TAIR 10
Match: AT1G24260.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 153.3 bits (386), Expect = 2.1e-37
Identity = 81/147 (55.10%), Postives = 112/147 (76.19%), Query Frame = 0


Query: 1   MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSD 60
           MGRGRV+LKRIENKINRQVTF+KR+ GLLKKA+E+SVLCDAEVALI+FS++GKL+E+ S 
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLD 120
           SSM + LERY++ +Y   +    +    ++ +   EY +LK R + LQR   + +GEDL 
Sbjct: 61  SSMLRTLERYQKCNYGAPEPNVPSREALAELSSQQEYLKLKERYDALQRTQRNLLGEDLG 120

Query: 121 SLSVKELQNLEQQIDTALKHERAIQEQ 148
            LS KEL++LE+Q+D++LK  RA++ Q
Sbjct: 121 PLSTKELESLERQLDSSLKQIRALRTQ 147

The following BLAST results are available for this feature:

BLAST of CmoCh12G000880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6E6S7	3.0e-65	67.91	Agamous-like MADS-box protein AP1 OS=Vitis vinifera OX=29760 GN=AP1 PE=2 SV=1	[more]
Q96355	3.7e-63	62.56	Floral homeotic protein APETALA 1-1 OS=Brassica oleracea var. italica OX=36774 G...	[more]
B4YPV4	3.7e-63	62.56	Floral homeotic protein APETALA 1 C OS=Brassica oleracea var. alboglabra OX=3714...	[more]
Q8GTF4	3.7e-63	62.56	Floral homeotic protein APETALA 1 C OS=Brassica oleracea var. botrytis OX=3715 G...	[more]
Q41276	8.3e-63	62.22	Floral homeotic protein APETALA 1 OS=Sinapis alba OX=3728 GN=AP1 PE=2 SV=1	[more]

BLAST of CmoCh12G000880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GHU4	3.6e-101	91.48	truncated transcription factor CAULIFLOWER A-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1KPM9	1.0e-100	91.03	truncated transcription factor CAULIFLOWER A-like OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1BSN0	4.7e-93	84.82	truncated transcription factor CAULIFLOWER A-like OS=Momordica charantia OX=3673...	[more]
A0A1S3BCQ3	1.3e-90	82.88	truncated transcription factor CAULIFLOWER A OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A1U8M7T9	7.8e-72	75.61	truncated transcription factor CAULIFLOWER D-like isoform X2 OS=Gossypium hirsut...	[more]

BLAST of CmoCh12G000880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G69120.1	2.9e-63	61.67	K-box region and MADS-box transcription factor family protein	[more]
AT1G26310.1	1.2e-56	61.78	K-box region and MADS-box transcription factor family protein	[more]
AT5G60910.1	3.7e-50	56.59	AGAMOUS-like 8	[more]
AT3G30260.1	3.8e-39	56.97	AGAMOUS-like 79	[more]
AT1G24260.1	2.1e-37	55.10	K-box region and MADS-box transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 127..147
None	No IPR available	PANTHER	PTHR48019:SF79	TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A	coord: 1..182
None	No IPR available	PANTHER	PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	coord: 1..182
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 23..38 score: 73.71 coord: 3..23 score: 70.24 coord: 38..59 score: 65.42
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 1.1E-40 score: 151.2
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..57 e-value: 1.2E-25 score: 88.8
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 3..57
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..61 score: 32.085411
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 85..168 e-value: 6.3E-16 score: 58.4
IPR002487	Transcription factor, K-box	PROSITE	PS51297	K_BOX	coord: 90..176 score: 12.680634
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 13..86 e-value: 6.6E-28 score: 98.4
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 2..83
IPR033896	MADS MEF2-like	CDD	cd00265	MADS_MEF2_like	coord: 2..79 e-value: 1.39349E-43 score: 138.454

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G000880.1	CmoCh12G000880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010582	floral meristem determinacy
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding