CmoCh12G000630 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G000630
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	F-box protein At1g67340-like
Location	Cmo_Chr12: 333592 .. 335370 (-)
RNA-Seq Expression	CmoCh12G000630
Synteny	CmoCh12G000630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTGACTGTGTCAGATATCAGCCTCTCTCCCATGAGAACCAACATGAAGAAGAGAGCTTCACAAACAAATTTACAGTATTTCTCCGGTTCCCCCAAAAGGAGGCGCTTTTCCCCGCCGCGCTCTTCCGCCGTAGTTTCTGATTTTTTTCAGTCCTTGCCGGACGACCTCCTCATCTCTATCCTCTCTAAGCTCAGCGCCACCGCTTCTTCCCCGTCGGATTTCATCAGCGCTTTGATTACGTACGTTATATGTTTTTTCCTTTTTTTTTTTTGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGTTATGAATCGATTTGGCTGATTGAATTTGGTGTAACAGATGCAAGAGATTCAACAATTTAGGGCGTCATTCGCTTGTTTTGGCCAAGGCTTCCCAGAAAACTTTGGCAATCGGAGCTAAAAACTGGTCGGAATCCGCTCACCGGTTTCTTAAACACTGCGTTGACGCCGGCAACGTTGAGGCTTGCTATATTCTCGGCATGGTAACTACAAACACCTTGAAAATTTTAACGATTTTTTTATTTTGGGTCTCTGAATTTCTGTTTTTTTTTTTCCTCAGATTCGGTTTTATTGTCTGCAAAACCGAGGGAGTGGAGCTTCTTTAATGGCGAAGGCGGCGATTAGCTCCCACGCGCCGGCGTTGTATTCACTTGCTGTGATACAGTTCAACGGTAGCGGTGGCTCGAAGAACGATAAGGATTTGAGAGCCGGAGTGGCGCTTTGTGCCAGGGCTGCGTTTTTGGGTCATATTGATGCTTTAAGGGAGCTTGGACATTGCCTTCAAGATGGCTATGGTGTTTGTCAGAACATTATGGAGGGCCGTCGGTTTCTCGTCCAAGCCAACGCACGGGAACTCGCCGCCGTGCTGTCGTCAACGGCGGCCACAGTTACCGGCGGAGCTGCGCGTTCTTGGGTCACGTGCGATCCACACACGCACCACCGCGCAGCGGTGGGGTCGTCCACCGAGTGTCCGTTGCTAAGTGATTTCGGCTGTAATGTCCCGGCGGCGGAGGCTCATCCGGCGAGCCGGTTTATGGCGGAGTGGTTCGCTATACGCGGCGGGCCACCGGGGCCGGGGCTGAGGCTGTGTTCGCACGTGGGGTGTGGGCGGCCGGAGACAAGGAGGCACGAGTTTCGTCGGTGTTCGGTTTGTGGGATTGTTAACTACTGCTCACGTGCCTGTCAGGCGCTTGATTGGAAGCTGCAGCATAAGGCGGAATGTTCGCCTTTGGAGCTATGGCCGGAAAATGAGGGCGAAGGTGGTGTAGGCGAGGGCGGAGTTGAAAATGAAAACGAAGCGGAGGATGTGATAGAAGAGAGTTAAATTAAACGGAGGATGTGATTTTTACGGTTTTAGGAATTTAAACGGCGAGTAACGGGTGTTGTAACGGAAGAGGAAAACAGGAGGTACCTAACAAAACAAAAGGCTTAAATCCCACCTCCCCCACTTTTTCCTTTTTCTTTTTACTTTTGTCAATATAATTTTTGTAGAGTACAGTGCATCCATTGTCACCTTCGATCTTAGGTATTTAAAGTTTTTAATTTTTTAGATTTTCAGAA

mRNA sequence

GTTTGACTGTGTCAGATATCAGCCTCTCTCCCATGAGAACCAACATGAAGAAGAGAGCTTCACAAACAAATTTACAGTATTTCTCCGGTTCCCCCAAAAGGAGGCGCTTTTCCCCGCCGCGCTCTTCCGCCGTAGTTTCTGATTTTTTTCAGTCCTTGCCGGACGACCTCCTCATCTCTATCCTCTCTAAGCTCAGCGCCACCGCTTCTTCCCCGTCGGATTTCATCAGCGCTTTGATTACATGCAAGAGATTCAACAATTTAGGGCGTCATTCGCTTGTTTTGGCCAAGGCTTCCCAGAAAACTTTGGCAATCGGAGCTAAAAACTGGTCGGAATCCGCTCACCGGTTTCTTAAACACTGCGTTGACGCCGGCAACGTTGAGGCTTGCTATATTCTCGGCATGATTCGGTTTTATTGTCTGCAAAACCGAGGGAGTGGAGCTTCTTTAATGGCGAAGGCGGCGATTAGCTCCCACGCGCCGGCGTTGTATTCACTTGCTGTGATACAGTTCAACGGTAGCGGTGGCTCGAAGAACGATAAGGATTTGAGAGCCGGAGTGGCGCTTTGTGCCAGGGCTGCGTTTTTGGGTCATATTGATGCTTTAAGGGAGCTTGGACATTGCCTTCAAGATGGCTATGGTGTTTGTCAGAACATTATGGAGGGCCGTCGGTTTCTCGTCCAAGCCAACGCACGGGAACTCGCCGCCGTGCTGTCGTCAACGGCGGCCACAGTTACCGGCGGAGCTGCGCGTTCTTGGGTCACGTGCGATCCACACACGCACCACCGCGCAGCGGTGGGGTCGTCCACCGAGTGTCCGTTGCTAAGTGATTTCGGCTGTAATGTCCCGGCGGCGGAGGCTCATCCGGCGAGCCGGTTTATGGCGGAGTGGTTCGCTATACGCGGCGGGCCACCGGGGCCGGGGCTGAGGCTGTGTTCGCACGTGGGGTGTGGGCGGCCGGAGACAAGGAGGCACGAGTTTCGTCGGTGTTCGGTTTGTGGGATTGTTAACTACTGCTCACGTGCCTGTCAGGCGCTTGATTGGAAGCTGCAGCATAAGGCGGAATGTTCGCCTTTGGAGCTATGGCCGGAAAATGAGGGCGAAGGTGGTGTAGGCGAGGGCGGAGTTGAAAATGAAAACGAAGCGGAGGATGTGATAGAAGAGAGTTAAATTAAACGGAGGATGTGATTTTTACGGTTTTAGGAATTTAAACGGCGAGTAACGGGTGTTGTAACGGAAGAGGAAAACAGGAGGTACCTAACAAAACAAAAGGCTTAAATCCCACCTCCCCCACTTTTTCCTTTTTCTTTTTACTTTTGTCAATATAATTTTTGTAGAGTACAGTGCATCCATTGTCACCTTCGATCTTAGGTATTTAAAGTTTTTAATTTTTTAGATTTTCAGAA

Coding sequence (CDS)

ATGAGAACCAACATGAAGAAGAGAGCTTCACAAACAAATTTACAGTATTTCTCCGGTTCCCCCAAAAGGAGGCGCTTTTCCCCGCCGCGCTCTTCCGCCGTAGTTTCTGATTTTTTTCAGTCCTTGCCGGACGACCTCCTCATCTCTATCCTCTCTAAGCTCAGCGCCACCGCTTCTTCCCCGTCGGATTTCATCAGCGCTTTGATTACATGCAAGAGATTCAACAATTTAGGGCGTCATTCGCTTGTTTTGGCCAAGGCTTCCCAGAAAACTTTGGCAATCGGAGCTAAAAACTGGTCGGAATCCGCTCACCGGTTTCTTAAACACTGCGTTGACGCCGGCAACGTTGAGGCTTGCTATATTCTCGGCATGATTCGGTTTTATTGTCTGCAAAACCGAGGGAGTGGAGCTTCTTTAATGGCGAAGGCGGCGATTAGCTCCCACGCGCCGGCGTTGTATTCACTTGCTGTGATACAGTTCAACGGTAGCGGTGGCTCGAAGAACGATAAGGATTTGAGAGCCGGAGTGGCGCTTTGTGCCAGGGCTGCGTTTTTGGGTCATATTGATGCTTTAAGGGAGCTTGGACATTGCCTTCAAGATGGCTATGGTGTTTGTCAGAACATTATGGAGGGCCGTCGGTTTCTCGTCCAAGCCAACGCACGGGAACTCGCCGCCGTGCTGTCGTCAACGGCGGCCACAGTTACCGGCGGAGCTGCGCGTTCTTGGGTCACGTGCGATCCACACACGCACCACCGCGCAGCGGTGGGGTCGTCCACCGAGTGTCCGTTGCTAAGTGATTTCGGCTGTAATGTCCCGGCGGCGGAGGCTCATCCGGCGAGCCGGTTTATGGCGGAGTGGTTCGCTATACGCGGCGGGCCACCGGGGCCGGGGCTGAGGCTGTGTTCGCACGTGGGGTGTGGGCGGCCGGAGACAAGGAGGCACGAGTTTCGTCGGTGTTCGGTTTGTGGGATTGTTAACTACTGCTCACGTGCCTGTCAGGCGCTTGATTGGAAGCTGCAGCATAAGGCGGAATGTTCGCCTTTGGAGCTATGGCCGGAAAATGAGGGCGAAGGTGGTGTAGGCGAGGGCGGAGTTGAAAATGAAAACGAAGCGGAGGATGTGATAGAAGAGAGTTAA

Protein sequence

MRTNMKKRASQTNLQYFSGSPKRRRFSPPRSSAVVSDFFQSLPDDLLISILSKLSATASSPSDFISALITCKRFNNLGRHSLVLAKASQKTLAIGAKNWSESAHRFLKHCVDAGNVEACYILGMIRFYCLQNRGSGASLMAKAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQANARELAAVLSSTAATVTGGAARSWVTCDPHTHHRAAVGSSTECPLLSDFGCNVPAAEAHPASRFMAEWFAIRGGPPGPGLRLCSHVGCGRPETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAECSPLELWPENEGEGGVGEGGVENENEAEDVIEES

Homology

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BLAST of CmoCh12G000630 vs. ExPASy Swiss-Prot
Match: Q9FYF9 (F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1)

HSP 1 Score: 477.2 bits (1227), Expect = 1.7e-133
Identity = 242/368 (65.76%), Postives = 283/368 (76.90%), Query Frame = 0


Query: 17  FSGSPKRRR-------FSPPRSSAVVSDFFQSLPDDLLISILSKLSATASSPSDFISALI 76
           F+   KRRR        SP   +   +D   S+PDDL+ISIL KL +T+  P+DFI+ L+
Sbjct: 15  FTPGRKRRRCVVVPSSVSPVPENTTGADLLDSIPDDLVISILCKLGSTSRCPADFINVLL 74

Query: 77  TCKRFNNLGRHSLVLAKASQKTLAIGAKNWSESAHRFLKHCVDAGNVEACYILGMIRFYC 136
           TCKR   L  + +VL++ S K +A+ A NWSE +HRFLK CVDAG++EACY LGMIRFYC
Sbjct: 75  TCKRLKGLAMNPIVLSRLSPKAIAVKAHNWSEYSHRFLKRCVDAGSLEACYTLGMIRFYC 134

Query: 137 LQNRGSGASLMAKAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHID 196
           LQNRG+GASLMAKAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGH+D
Sbjct: 135 LQNRGNGASLMAKAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHVD 194

Query: 197 ALRELGHCLQDGYGVCQNIMEGRRFLVQANARELAAVLSSTAATVTGGAARS-WVTCDPH 256
           ALRELGHCLQDGYGV QN+ EGRRFLVQANARELAAVLSS      G  ARS W++    
Sbjct: 195 ALRELGHCLQDGYGVPQNVSEGRRFLVQANARELAAVLSS------GIQARSTWLSLSQP 254

Query: 257 THHRAAVGSSTECPLLSDFGCNVPAAEAHPASRFMAEWFAIRGGP-PGPGLRLCSHVGCG 316
                       CPLLSDFGCNVPA E HPA+RF+A+WFA+RGG  PG GLRLCSH GCG
Sbjct: 255 PPPVVPNHGQQTCPLLSDFGCNVPAPETHPANRFLADWFAVRGGDCPGDGLRLCSHAGCG 314

Query: 317 RPETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAECSPLELWPENEGEGGVGEGGVEN 376
           RPETR+HEFRRCSVCG+VNYCSRACQALDWKL+HK +C+P++ W E EG+GG G   ++ 
Sbjct: 315 RPETRKHEFRRCSVCGVVNYCSRACQALDWKLRHKMDCAPVQRWLE-EGDGGEGNVQIDG 374

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BLAST of CmoCh12G000630 vs. ExPASy Swiss-Prot
Match: Q9FK27 (F-box protein At5g50450 OS=Arabidopsis thaliana OX=3702 GN=At5g50450 PE=2 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 4.1e-108
Identity = 204/339 (60.18%), Postives = 247/339 (72.86%), Query Frame = 0


Query: 35  VSDFFQSLPDDLLISILSKLSATASSPSDFISALITCKRFNNLGRHSLVLAKASQKTLAI 94
           V++ F+ L DDL+ISIL KL+ +ASSPSDF++ L TCKR N LG H LVL+KA  +TLA+
Sbjct: 18  VNNHFEDLHDDLIISILRKLATSASSPSDFLTVLSTCKRLNRLGLHPLVLSKAGTQTLAV 77

Query: 95  GAKNWSESAHRFLKHCVDAGNVEACYILGMIRFYCLQNRGSGASLMAKAAISSHAPALYS 154
            A+ WS+S+H+FLK CV+AGN++A Y LGMIRFYCLQN  SGASLMAKAAI SHAPALYS
Sbjct: 78  TAEKWSDSSHKFLKLCVNAGNIDASYSLGMIRFYCLQNPVSGASLMAKAAIKSHAPALYS 137

Query: 155 LAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRF 214
           L+VIQFNGSGGSK DK+LRAGVALCAR+A+LGH+DALRELGHCLQDGYGV +++ EGRR 
Sbjct: 138 LSVIQFNGSGGSKTDKNLRAGVALCARSAYLGHVDALRELGHCLQDGYGVPRDVSEGRRL 197

Query: 215 LVQANARELAAVLSSTAATVTGGAARSWVTCDPHTHHRAAVGSSTECPLLSDFGCNVPAA 274
           L+QANARELA  L            RS++          ++ S  E   L+D    VP  
Sbjct: 198 LIQANARELACSL------------RSYL----------SLKSGDENETLTDLSV-VPVQ 257

Query: 275 EAHPASRFMAEWFAIRGGPPGPGLRLCSHVGCGRPETRRHEFRRCSVCGIVNYCSRACQA 334
           E HP +RF+ EWF+        GLR+CSH GCGRPETR HEFRRCSVCG VNYCSR CQA
Sbjct: 258 EIHPVNRFLKEWFSSGRVDLAEGLRMCSHGGCGRPETRAHEFRRCSVCGKVNYCSRGCQA 317

Query: 335 LDWKLQHKAECSPLELWPENEGEGGVGEGGVENENEAED 374
           LDW+ +HK EC+PL+LW     E  +G+ G     E +D
Sbjct: 318 LDWRAKHKVECTPLDLWVAAAAE--IGDDGEAVAVEIDD 331

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BLAST of CmoCh12G000630 vs. ExPASy Swiss-Prot
Match: Q2YDC9 (Programmed cell death protein 2 OS=Bos taurus OX=9913 GN=PDCD2 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 8.6e-05
Identity = 27/87 (31.03%), Postives = 41/87 (47.13%), Query Frame = 0


Query: 260 ECPLLSDFGCNVPAAEAHPASRFMAEWFAIRGGPPGPGLRLCSHVGCGRPETRRHEFRRC 319
           + P  +DF    P +E  P+    + +  ++      G  LC   GC  P       +RC
Sbjct: 99  QLPRQNDFYSYEPPSEDPPSETGESVYLHLKS-----GAHLCRVCGCSGP-------KRC 158

Query: 320 SVCGIVNYCSRACQALDWKLQHKAECS 347
           S C   +YCS+  Q+LDW+L HK  C+
Sbjct: 159 SRCHKAHYCSKEHQSLDWRLGHKQACA 173

[Close]

BLAST of CmoCh12G000630 vs. ExPASy Swiss-Prot
Match: Q09415 (SET domain-containing protein 14 OS=Caenorhabditis elegans OX=6239 GN=set-14 PE=4 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 9.5e-04
Identity = 19/44 (43.18%), Postives = 26/44 (59.09%), Query Frame = 0


Query: 306 CGRPETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAECSPLE 350
           C +  T   E ++CS C  + YCS+ CQ  DWKL HK EC  ++
Sbjct: 26  CNQCLTSMAELKKCSACRRLAYCSQECQRADWKL-HKVECKAIK 68

[Close]

BLAST of CmoCh12G000630 vs. ExPASy TrEMBL
Match: A0A6J1GHQ9 (F-box protein At1g67340-like OS=Cucurbita moschata OX=3662 GN=LOC111454044 PE=4 SV=1)

HSP 1 Score: 762.7 bits (1968), Expect = 7.3e-217
Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 0


Query: 1   MRTNMKKRASQTNLQYFSGSPKRRRFSPPRSSAVVSDFFQSLPDDLLISILSKLSATASS 60
           MRTNMKKRASQTNLQYFSGSPKRRRFSPPRSSAVVSDFFQSLPDDLLISILSKLSATASS
Sbjct: 25  MRTNMKKRASQTNLQYFSGSPKRRRFSPPRSSAVVSDFFQSLPDDLLISILSKLSATASS 84

Query: 61  PSDFISALITCKRFNNLGRHSLVLAKASQKTLAIGAKNWSESAHRFLKHCVDAGNVEACY 120
           PSDFISALITCKRFNNLGRHSLVLAKASQKTLAIGAKNWSESAHRFLKHCVDAGNVEACY
Sbjct: 85  PSDFISALITCKRFNNLGRHSLVLAKASQKTLAIGAKNWSESAHRFLKHCVDAGNVEACY 144

Query: 121 ILGMIRFYCLQNRGSGASLMAKAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCA 180
           ILGMIRFYCLQNRGSGASLMAKAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCA
Sbjct: 145 ILGMIRFYCLQNRGSGASLMAKAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCA 204

Query: 181 RAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQANARELAAVLSSTAATVTGGAAR 240
           RAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQANARELAAVLSSTAATVTGGAAR
Sbjct: 205 RAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQANARELAAVLSSTAATVTGGAAR 264

Query: 241 SWVTCDPHTHHRAAVGSSTECPLLSDFGCNVPAAEAHPASRFMAEWFAIRGGPPGPGLRL 300
           SWVTCDPHTHHRAAVGSSTECPLLSDFGCNVPAAEAHPASRFMAEWFAIRGGPPGPGLRL
Sbjct: 265 SWVTCDPHTHHRAAVGSSTECPLLSDFGCNVPAAEAHPASRFMAEWFAIRGGPPGPGLRL 324

Query: 301 CSHVGCGRPETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAECSPLELWPENEGEGGV 360
           CSHVGCGRPETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAECSPLELWPENEGEGGV
Sbjct: 325 CSHVGCGRPETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAECSPLELWPENEGEGGV 384

Query: 361 GEGGVENENEAEDVIEES 379
           GEGGVENENEAEDVIEES
Sbjct: 385 GEGGVENENEAEDVIEES 402

[Close]

BLAST of CmoCh12G000630 vs. ExPASy TrEMBL
Match: A0A6J1KKI0 (F-box protein At1g67340-like OS=Cucurbita maxima OX=3661 GN=LOC111496556 PE=4 SV=1)

HSP 1 Score: 749.2 bits (1933), Expect = 8.4e-213
Identity = 372/380 (97.89%), Postives = 375/380 (98.68%), Query Frame = 0


Query: 1   MRTNMKKRASQTNLQYFSGSPKRRRFSPPRSSAVVSDFFQSLPDDLLISILSKLSATASS 60
           MRTNMKKRASQTNLQYFSGSPKR+RFSPPRSSA VSDFFQSLPDDLLISILSKLSA ASS
Sbjct: 25  MRTNMKKRASQTNLQYFSGSPKRKRFSPPRSSAAVSDFFQSLPDDLLISILSKLSANASS 84

Query: 61  PSDFISALITCKRFNNLGRHSLVLAKASQKTLAIGAKNWSESAHRFLKHCVDAGNVEACY 120
           PSDFISALITCKRFNNLGRHSLVLAKASQKTLAIGAKNWSESAHRFLKHCVDAGNVEACY
Sbjct: 85  PSDFISALITCKRFNNLGRHSLVLAKASQKTLAIGAKNWSESAHRFLKHCVDAGNVEACY 144

Query: 121 ILGMIRFYCLQNRGSGASLMAKAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCA 180
           ILGMIRFYCLQNRGSGASLMAKAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCA
Sbjct: 145 ILGMIRFYCLQNRGSGASLMAKAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCA 204

Query: 181 RAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQANARELAAVLSSTAATVTGGAAR 240
           RAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQANARELAAVLSSTAAT TGGAAR
Sbjct: 205 RAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRFLVQANARELAAVLSSTAATATGGAAR 264

Query: 241 SWVTCDPHTHHRAAVGSSTECPLLSDFGCNVPAAEAHPASRFMAEWFAIRGGPPGPGLRL 300
           SWVTCDPHTHHRAAVGSSTECPLLSDFGCNVPAAEAHPASRFMAEWFAIRGGPPGPGLRL
Sbjct: 265 SWVTCDPHTHHRAAVGSSTECPLLSDFGCNVPAAEAHPASRFMAEWFAIRGGPPGPGLRL 324

Query: 301 CSHVGCGRPETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAECSPLELWPENEGEGGV 360
           CSHVGCGRPETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAECSPLELWPENEGEGGV
Sbjct: 325 CSHVGCGRPETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAECSPLELWPENEGEGGV 384

Query: 361 --GEGGVENENEAEDVIEES 379
             G+GGV+NENEAEDVIEES
Sbjct: 385 GDGDGGVQNENEAEDVIEES 404

[Close]

BLAST of CmoCh12G000630 vs. ExPASy TrEMBL
Match: A0A1S3BB38 (F-box protein At1g67340-like OS=Cucumis melo OX=3656 GN=LOC103487769 PE=4 SV=1)

HSP 1 Score: 614.0 bits (1582), Expect = 4.2e-172
Identity = 307/359 (85.52%), Postives = 326/359 (90.81%), Query Frame = 0


Query: 22  KRRRFSPPRSSAVVSDFFQSLPDDLLISILSKLSATASSPSDFISALITCKRFNNLGRHS 81
           KR RF P       SDFF SLPDDLLISILSKL+++ASSPS FI+ALITCKRFN+LGRHS
Sbjct: 16  KRNRFYPK------SDFFDSLPDDLLISILSKLASSASSPSHFINALITCKRFNHLGRHS 75

Query: 82  LVLAKASQKTLAIGAKNWSESAHRFLKHCVDAGNVEACYILGMIRFYCLQNRGSGASLMA 141
           LVL+KASQ+TL I AKNWSESAHRFLK CVDAGNVEACYILGMIRFYCLQNRGSGASLMA
Sbjct: 76  LVLSKASQRTLGISAKNWSESAHRFLKQCVDAGNVEACYILGMIRFYCLQNRGSGASLMA 135

Query: 142 KAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDG 201
           KAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDG
Sbjct: 136 KAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDG 195

Query: 202 YGVCQNIMEGRRFLVQANARELAAVLSSTAATVTGGAARSWVTCDPHTHHRAAVGSSTEC 261
           YGVCQNIMEGRRFLVQANARELAAVLSS ++     A+RSWVTC+P   HR AVGSS+EC
Sbjct: 196 YGVCQNIMEGRRFLVQANARELAAVLSSPSS----AASRSWVTCNPQAIHRTAVGSSSEC 255

Query: 262 PLLSDFGCNVPAAEAHPASRFMAEWFAIRGGPPGPGLRLCSHVGCGRPETRRHEFRRCSV 321
           PLLSDFGCNVPA EAHPASRFMAEWFA+RGG PGPGLRLCSHVGCGRPETRRHEFRRCSV
Sbjct: 256 PLLSDFGCNVPAPEAHPASRFMAEWFALRGGAPGPGLRLCSHVGCGRPETRRHEFRRCSV 315

Query: 322 CGIVNYCSRACQALDWKLQHKAECSPLELWPENEGEGGV--GEGGVENENEAEDVIEES 379
           CGIVNYCSRACQALDWKLQHKAEC+PLE+WPEN+G+ G   GEGG+ NENE EDV+ ES
Sbjct: 316 CGIVNYCSRACQALDWKLQHKAECAPLEIWPENDGDDGEVDGEGGILNENEDEDVVGES 364

[Close]

BLAST of CmoCh12G000630 vs. ExPASy TrEMBL
Match: A0A0A0LMZ9 (MYND-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G351550 PE=4 SV=1)

HSP 1 Score: 595.5 bits (1534), Expect = 1.5e-166
Identity = 302/366 (82.51%), Postives = 324/366 (88.52%), Query Frame = 0


Query: 22  KRRRFSPPRSSAVVSDFFQSLPDDLLISILSKLSATASSPSDFISALITCKRFNNLGRHS 81
           KR RF P        DFF SLPDDLLISILSKL ++ASSPS FI+ALITCKRFN+LGRHS
Sbjct: 16  KRNRFYPK------FDFFDSLPDDLLISILSKLVSSASSPSHFINALITCKRFNHLGRHS 75

Query: 82  LVLAKASQKTLAIGAKNWSESAHRFLKHCVDAGNVEACYILGMIRFYCLQNRGSGASLMA 141
           LVL+KASQ+TL I AKNWSESAHRFLK CVDAGNVEACYILGMIRFYCLQNRGSGASLMA
Sbjct: 76  LVLSKASQRTLGISAKNWSESAHRFLKQCVDAGNVEACYILGMIRFYCLQNRGSGASLMA 135

Query: 142 KAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDG 201
           KAAISS+APALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGH+DALRELGHCLQDG
Sbjct: 136 KAAISSYAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHVDALRELGHCLQDG 195

Query: 202 YGVCQNIMEGRRFLVQANARELAAVLSSTAATVTGGAARSWVTCDPHTHHRAAVGSSTEC 261
           YGVCQNIMEGRRFLVQANARELAAVLSS ++     A+RS VTC+PH  HR AVGSS++C
Sbjct: 196 YGVCQNIMEGRRFLVQANARELAAVLSSPSS----AASRSLVTCNPHAIHRTAVGSSSDC 255

Query: 262 PLLSDFGCNVPAAEAHPASRFMAEWFAIRGGPPGPGLRLCSHVGCGRPETRRHEFRRCSV 321
           PLLSDFGCNVPA EAHPASRFMAEWFA+RGG PGPGLRLCSHVGCGRPETRRHEFRRCSV
Sbjct: 256 PLLSDFGCNVPAPEAHPASRFMAEWFALRGGAPGPGLRLCSHVGCGRPETRRHEFRRCSV 315

Query: 322 CGIVNYCSRACQALDWKLQHKAECSPLELWPENEGEGGV--GEGGVENENEA-------E 379
           CGIVNYCSRACQALDWKLQHKAEC+PLE+WPEN+G+     G+GG+ NENE        +
Sbjct: 316 CGIVNYCSRACQALDWKLQHKAECAPLEIWPENDGDDVEVDGDGGILNENEEDDDEDDDD 371

[Close]

BLAST of CmoCh12G000630 vs. ExPASy TrEMBL
Match: A0A067JVI5 (MYND-type domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_17961 PE=4 SV=1)

HSP 1 Score: 536.6 bits (1381), Expect = 8.5e-149
Identity = 270/349 (77.36%), Postives = 295/349 (84.53%), Query Frame = 0


Query: 22  KRRRFSPPRSSAVVSDFFQSLPDDLLISILSKLSATASSPSDFISALITCKRFNNLGRHS 81
           KR+R SP    A  +D F +LPDDL++SIL K+S++AS PSDFI+ LITCKR N LG HS
Sbjct: 40  KRQRLSP--EIAGETDLFDTLPDDLVLSILCKISSSASCPSDFINVLITCKRLNGLGLHS 99

Query: 82  LVLAKASQKTLAIGAKNWSESAHRFLKHCVDAGNVEACYILGMIRFYCLQNRGSGASLMA 141
           LVL+KASQKT AI AKNWS+SAHRFLK C DAGNVEACY LGMIRFYCLQNRGSGASLMA
Sbjct: 100 LVLSKASQKTFAIIAKNWSDSAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGASLMA 159

Query: 142 KAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDG 201
           KAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDG
Sbjct: 160 KAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDG 219

Query: 202 YGVCQNIMEGRRFLVQANARELAAVLSSTAATVTGGAARSWVTCDPHTHHRAAVGSSTEC 261
           YGV QN+ EGRRFLVQANARELAAVLS+     +G   R+W+T +PH H    + S   C
Sbjct: 220 YGVRQNVAEGRRFLVQANARELAAVLSNPN---SGLNTRAWLTWNPHAHPNHRLASGPGC 279

Query: 262 PLLSDFGCNVPAAEAHPASRFMAEWFAIRGGPPGPGLRLCSHVGCGRPETRRHEFRRCSV 321
           PLLSDFGCNVPA EAHPASRFMA+WFA RGG PG GLRLCSHVGCGRPETR+HEFRRCSV
Sbjct: 280 PLLSDFGCNVPAPEAHPASRFMADWFASRGGTPGSGLRLCSHVGCGRPETRKHEFRRCSV 339

Query: 322 CGIVNYCSRACQALDWKLQHKAECSPLELWPENEGEGG-VGEGGVENEN 370
           CG VNYCSRACQALDWKL+HK EC+P+E W + EGEGG V  GG  N+N
Sbjct: 340 CGAVNYCSRACQALDWKLRHKEECAPVERWVDEEGEGGDVEAGGEGNQN 383

[Close]

BLAST of CmoCh12G000630 vs. TAIR 10
Match: AT1G67340.1 (HCP-like superfamily protein with MYND-type zinc finger )

HSP 1 Score: 477.2 bits (1227), Expect = 1.2e-134
Identity = 242/368 (65.76%), Postives = 283/368 (76.90%), Query Frame = 0


Query: 17  FSGSPKRRR-------FSPPRSSAVVSDFFQSLPDDLLISILSKLSATASSPSDFISALI 76
           F+   KRRR        SP   +   +D   S+PDDL+ISIL KL +T+  P+DFI+ L+
Sbjct: 15  FTPGRKRRRCVVVPSSVSPVPENTTGADLLDSIPDDLVISILCKLGSTSRCPADFINVLL 74

Query: 77  TCKRFNNLGRHSLVLAKASQKTLAIGAKNWSESAHRFLKHCVDAGNVEACYILGMIRFYC 136
           TCKR   L  + +VL++ S K +A+ A NWSE +HRFLK CVDAG++EACY LGMIRFYC
Sbjct: 75  TCKRLKGLAMNPIVLSRLSPKAIAVKAHNWSEYSHRFLKRCVDAGSLEACYTLGMIRFYC 134

Query: 137 LQNRGSGASLMAKAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHID 196
           LQNRG+GASLMAKAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGH+D
Sbjct: 135 LQNRGNGASLMAKAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHVD 194

Query: 197 ALRELGHCLQDGYGVCQNIMEGRRFLVQANARELAAVLSSTAATVTGGAARS-WVTCDPH 256
           ALRELGHCLQDGYGV QN+ EGRRFLVQANARELAAVLSS      G  ARS W++    
Sbjct: 195 ALRELGHCLQDGYGVPQNVSEGRRFLVQANARELAAVLSS------GIQARSTWLSLSQP 254

Query: 257 THHRAAVGSSTECPLLSDFGCNVPAAEAHPASRFMAEWFAIRGGP-PGPGLRLCSHVGCG 316
                       CPLLSDFGCNVPA E HPA+RF+A+WFA+RGG  PG GLRLCSH GCG
Sbjct: 255 PPPVVPNHGQQTCPLLSDFGCNVPAPETHPANRFLADWFAVRGGDCPGDGLRLCSHAGCG 314

Query: 317 RPETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAECSPLELWPENEGEGGVGEGGVEN 376
           RPETR+HEFRRCSVCG+VNYCSRACQALDWKL+HK +C+P++ W E EG+GG G   ++ 
Sbjct: 315 RPETRKHEFRRCSVCGVVNYCSRACQALDWKLRHKMDCAPVQRWLE-EGDGGEGNVQIDG 374

[Close]

BLAST of CmoCh12G000630 vs. TAIR 10
Match: AT5G50450.1 (HCP-like superfamily protein with MYND-type zinc finger )

HSP 1 Score: 392.9 bits (1008), Expect = 2.9e-109
Identity = 204/339 (60.18%), Postives = 247/339 (72.86%), Query Frame = 0


Query: 35  VSDFFQSLPDDLLISILSKLSATASSPSDFISALITCKRFNNLGRHSLVLAKASQKTLAI 94
           V++ F+ L DDL+ISIL KL+ +ASSPSDF++ L TCKR N LG H LVL+KA  +TLA+
Sbjct: 18  VNNHFEDLHDDLIISILRKLATSASSPSDFLTVLSTCKRLNRLGLHPLVLSKAGTQTLAV 77

Query: 95  GAKNWSESAHRFLKHCVDAGNVEACYILGMIRFYCLQNRGSGASLMAKAAISSHAPALYS 154
            A+ WS+S+H+FLK CV+AGN++A Y LGMIRFYCLQN  SGASLMAKAAI SHAPALYS
Sbjct: 78  TAEKWSDSSHKFLKLCVNAGNIDASYSLGMIRFYCLQNPVSGASLMAKAAIKSHAPALYS 137

Query: 155 LAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVCQNIMEGRRF 214
           L+VIQFNGSGGSK DK+LRAGVALCAR+A+LGH+DALRELGHCLQDGYGV +++ EGRR 
Sbjct: 138 LSVIQFNGSGGSKTDKNLRAGVALCARSAYLGHVDALRELGHCLQDGYGVPRDVSEGRRL 197

Query: 215 LVQANARELAAVLSSTAATVTGGAARSWVTCDPHTHHRAAVGSSTECPLLSDFGCNVPAA 274
           L+QANARELA  L            RS++          ++ S  E   L+D    VP  
Sbjct: 198 LIQANARELACSL------------RSYL----------SLKSGDENETLTDLSV-VPVQ 257

Query: 275 EAHPASRFMAEWFAIRGGPPGPGLRLCSHVGCGRPETRRHEFRRCSVCGIVNYCSRACQA 334
           E HP +RF+ EWF+        GLR+CSH GCGRPETR HEFRRCSVCG VNYCSR CQA
Sbjct: 258 EIHPVNRFLKEWFSSGRVDLAEGLRMCSHGGCGRPETRAHEFRRCSVCGKVNYCSRGCQA 317

Query: 335 LDWKLQHKAECSPLELWPENEGEGGVGEGGVENENEAED 374
           LDW+ +HK EC+PL+LW     E  +G+ G     E +D
Sbjct: 318 LDWRAKHKVECTPLDLWVAAAAE--IGDDGEAVAVEIDD 331

[Close]

BLAST of CmoCh12G000630 vs. TAIR 10
Match: AT1G17110.1 (ubiquitin-specific protease 15 )

HSP 1 Score: 45.4 bits (106), Expect = 1.1e-04
Identity = 17/32 (53.12%), Postives = 21/32 (65.62%), Query Frame = 0


Query: 318 RCSVCGIVNYCSRACQALDWKLQHKAECSPLE 350
           RCS C  V YCS  CQ + W++ HK EC P+E
Sbjct: 140 RCSRCKSVRYCSGKCQIIHWRVAHKDECVPVE 171

[Close]

BLAST of CmoCh12G000630 vs. TAIR 10
Match: AT1G17110.2 (ubiquitin-specific protease 15 )

HSP 1 Score: 45.4 bits (106), Expect = 1.1e-04
Identity = 17/32 (53.12%), Postives = 21/32 (65.62%), Query Frame = 0


Query: 318 RCSVCGIVNYCSRACQALDWKLQHKAECSPLE 350
           RCS C  V YCS  CQ + W++ HK EC P+E
Sbjct: 140 RCSRCKSVRYCSGKCQIIHWRVAHKDECVPVE 171

[Close]

BLAST of CmoCh12G000630 vs. TAIR 10
Match: AT2G24640.1 (ubiquitin-specific protease 19 )

HSP 1 Score: 44.7 bits (104), Expect = 2.0e-04
Identity = 19/40 (47.50%), Postives = 23/40 (57.50%), Query Frame = 0


Query: 306 CGRPETRRHEFRRCSVCGIVNYCSRACQALDWKLQHKAEC 346
           CG+  T     ++CS C  V YCS ACQ  DWK  HK +C
Sbjct: 67  CGKATT-----KKCSRCKSVRYCSAACQTSDWKSGHKLKC 101

The following BLAST results are available for this feature:

BLAST of CmoCh12G000630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FYF9	1.7e-133	65.76	F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1	[more]
Q9FK27	4.1e-108	60.18	F-box protein At5g50450 OS=Arabidopsis thaliana OX=3702 GN=At5g50450 PE=2 SV=1	[more]
Q2YDC9	8.6e-05	31.03	Programmed cell death protein 2 OS=Bos taurus OX=9913 GN=PDCD2 PE=2 SV=1	[more]
Q09415	9.5e-04	43.18	SET domain-containing protein 14 OS=Caenorhabditis elegans OX=6239 GN=set-14 PE=...	[more]

BLAST of CmoCh12G000630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GHQ9	7.3e-217	100.00	F-box protein At1g67340-like OS=Cucurbita moschata OX=3662 GN=LOC111454044 PE=4 ...	[more]
A0A6J1KKI0	8.4e-213	97.89	F-box protein At1g67340-like OS=Cucurbita maxima OX=3661 GN=LOC111496556 PE=4 SV...	[more]
A0A1S3BB38	4.2e-172	85.52	F-box protein At1g67340-like OS=Cucumis melo OX=3656 GN=LOC103487769 PE=4 SV=1	[more]
A0A0A0LMZ9	1.5e-166	82.51	MYND-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G351550 P...	[more]
A0A067JVI5	8.5e-149	77.36	MYND-type domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_17961 P...	[more]

BLAST of CmoCh12G000630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67340.1	1.2e-134	65.76	HCP-like superfamily protein with MYND-type zinc finger	[more]
AT5G50450.1	2.9e-109	60.18	HCP-like superfamily protein with MYND-type zinc finger	[more]
AT1G17110.1	1.1e-04	53.13	ubiquitin-specific protease 15	[more]
AT1G17110.2	1.1e-04	53.13	ubiquitin-specific protease 15	[more]
AT2G24640.1	2.0e-04	47.50	ubiquitin-specific protease 19	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.140.2220		coord: 300..352 e-value: 2.6E-11 score: 45.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 352..378
None	No IPR available	PANTHER	PTHR46758:SF7	HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN	coord: 22..367
None	No IPR available	SUPERFAMILY	144232	HIT/MYND zinc finger-like	coord: 300..348
None	No IPR available	SUPERFAMILY	81901	HCP-like	coord: 97..218
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 77..244 e-value: 2.6E-17 score: 65.2
IPR002893	Zinc finger, MYND-type	PFAM	PF01753	zf-MYND	coord: 306..345 e-value: 1.4E-7 score: 31.5
IPR002893	Zinc finger, MYND-type	PROSITE	PS50865	ZF_MYND_2	coord: 303..345 score: 10.9113
IPR044508	F-box protein At5g50450/At1g67340-like	PANTHER	PTHR46758	MYND DOMAIN-CONTAINING	coord: 22..367
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 23..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G000630.1	CmoCh12G000630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding