CmoCh12G000310 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G000310
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Cysteine proteinases superfamily protein
Location	Cmo_Chr12: 179372 .. 180889 (+)
RNA-Seq Expression	CmoCh12G000310
Synteny	CmoCh12G000310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCATAGACTCATAGCCTCAGATCATTTCTCGAACAGATCTATTCCCTTCCCCGTAGAATCATCGAACTCCATCTCCAACTCCTGCCCCCGCCCTTTGTTCTCGTCCTCGTTCTTTCTCGAATTATAATTTGTTGAAGAGAAGAAGATGGTGAAAGTGGCGACGTTCTTTGCAATGTCATTGGGCGCCTTCGTATTCTGGCAAACAATGGATAAACTCCATGTTTGGATCGCTCTCCGTCAAGACGAAAAGGTTCTCTCTCCATTTCCCTCCCTTCAGATTTCTCTAATTTTCTTCTACTTCTCATTTCATAGTCCTTTATTCTTCATTCTTCAATTGATGCCTGCTCCTCCGTTGAAGAGTATGAATTAAGTACAAAAAACAAAACCCTAGGGGGCAAATCTACGGCAGTTTATCTATGCGATTTTTGTAGAAATTTTGGTGATTAGAAATAACTAAGGTGTCTCTGCGTTCTTCTTTGCTGTTTCAGAAAGAGAGATTGGAAAGGGAAGCTGAGATCAGAAGAGTTAGAGAAGAGCTACTGCAACAAGCGAAACAGAAGGACTCTCTTGCTTGACGTTCCCCTACCTTCTGTTGCTGCTATCGGTATCAAATCGATAAGTTAAGATTTCTATGAGTATCGATTGTCTGTTCTAGAACAATGATAATGGGCTGGCTGATAAATTGTTGATTACTCATCTCTATGACTTCCCTGGTTATCAAATTGTAAACAATGCTCATTTCAATTTGGAGCTTTGCTGTTTGAATAATTGAACTTTTCATTTACTTGACTCAGTGTTGTGTTCATTACCTTCCTTGCTTCTATCTCAAATTTATACGTCCACACTCCATGGGGTTCTGGAGTTATCAATTTCCTGATCAGATACCAATGCAGCTACCTAAACGTTGCTTTTGTTGGGCAGAGTTTCCTCCAATGGAGCTCAATTTAATTGTTGAAAAATTGCATCTGAATCTTGATTAACATGGGGAAGACTCTCTACATAACTCTGTGCTACTTTTAGCTTCTTATTGAGATAAATGAATGCTTATTTTGATCCCTGACATGCTTGAAAAGTTTTCTAACTTTATATTTTACATTGGATGAGTATTCAGTACCTACTTTGTTTATCCATGTAGGATGACAGTTTCTTGTTTCTTTCTGTCTTTTCATGTAGAATGTCTTCAGAAAAATGGTCATTCTAACGAGGTTGGAATTATTTGACCATTTTGATTGAAAAGTAGAATCATTTTTCAGTCTACAATAGATCTAGTTCAACCTTCCTACACTGATGTGGTCATTAGGGATTGGACCCAACAAGACTTCCTAGTTGTGATGCATTTGCATAATCACTTGAGAAGAATCATGTAGTATGGTTATTACAGGTAGTAGAGGAATTATGTAGTTTGCTAGTACCCTAGAAGTTTATAGGCCGTCAGTTCCTGTCCTGGAGGGTCGTATCATCAAAACCCTGTTATAATCCTGTTCCTCCTTTTGTATCATCCATATGCAAAAGCATAA

mRNA sequence

TCCATAGACTCATAGCCTCAGATCATTTCTCGAACAGATCTATTCCCTTCCCCGTAGAATCATCGAACTCCATCTCCAACTCCTGCCCCCGCCCTTTGTTCTCGTCCTCGTTCTTTCTCGAATTATAATTTGTTGAAGAGAAGAAGATGGTGAAAGTGGCGACGTTCTTTGCAATGTCATTGGGCGCCTTCGTATTCTGGCAAACAATGGATAAACTCCATGTTTGGATCGCTCTCCGTCAAGACGAAAAGTCCTTTATTCTTCATTCTTCAATTGATGCCTGCTCCTCCGTTGAAGAAAAGAGAGATTGGAAAGGGAAGCTGAGATCAGAAGAGTTAGAGAAGAGCTACTGCAACAAGCGAAACAGAAGGACTCTCTTGCTTGACGTTCCCCTACCTTCTGTTGCTGCTATCGAATGTCTTCAGAAAAATGGTCATTCTAACGAGGCCGTCAGTTCCTGTCCTGGAGGGTCGTATCATCAAAACCCTGTTATAATCCTGTTCCTCCTTTTGTATCATCCATATGCAAAAGCATAA

Coding sequence (CDS)

ATGGTGAAAGTGGCGACGTTCTTTGCAATGTCATTGGGCGCCTTCGTATTCTGGCAAACAATGGATAAACTCCATGTTTGGATCGCTCTCCGTCAAGACGAAAAGTCCTTTATTCTTCATTCTTCAATTGATGCCTGCTCCTCCGTTGAAGAAAAGAGAGATTGGAAAGGGAAGCTGAGATCAGAAGAGTTAGAGAAGAGCTACTGCAACAAGCGAAACAGAAGGACTCTCTTGCTTGACGTTCCCCTACCTTCTGTTGCTGCTATCGAATGTCTTCAGAAAAATGGTCATTCTAACGAGGCCGTCAGTTCCTGTCCTGGAGGGTCGTATCATCAAAACCCTGTTATAATCCTGTTCCTCCTTTTGTATCATCCATATGCAAAAGCATAA

Protein sequence

MVKVATFFAMSLGAFVFWQTMDKLHVWIALRQDEKSFILHSSIDACSSVEEKRDWKGKLRSEELEKSYCNKRNRRTLLLDVPLPSVAAIECLQKNGHSNEAVSSCPGGSYHQNPVIILFLLLYHPYAKA

Homology

[Close]

BLAST of CmoCh12G000310 vs. ExPASy TrEMBL
Match: A0A6J1GHQ2 (uncharacterized protein LOC111454278 OS=Cucurbita moschata OX=3662 GN=LOC111454278 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 5.3e-10
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MVKVATFFAMSLGAFVFWQTMDKLHVWIALRQDEK 36
          MVKVATFFAMSLGAFVFWQTMDKLHVWIALRQDEK
Sbjct: 1  MVKVATFFAMSLGAFVFWQTMDKLHVWIALRQDEK 35

[Close]

BLAST of CmoCh12G000310 vs. ExPASy TrEMBL
Match: A0A6J1KBZ1 (uncharacterized protein LOC111491907 OS=Cucurbita maxima OX=3661 GN=LOC111491907 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-09
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MVKVATFFAMSLGAFVFWQTMDKLHVWIALRQDEK 36
          MVKVATFFAMSLGAFVFWQ+MDKLHVWIALRQDEK
Sbjct: 1  MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEK 35

[Close]

BLAST of CmoCh12G000310 vs. ExPASy TrEMBL
Match: A0A5A7V5Q7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001870 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-09
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MVKVATFFAMSLGAFVFWQTMDKLHVWIALRQDEK 36
          MVKVATFFAMSLGAFVFWQ+MDKLHVWIALRQDEK
Sbjct: 1  MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEK 35

[Close]

BLAST of CmoCh12G000310 vs. ExPASy TrEMBL
Match: A0A0A0LKK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G349670 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-09
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MVKVATFFAMSLGAFVFWQTMDKLHVWIALRQDEK 36
          MVKVATFFAMSLGAFVFWQ+MDKLHVWIALRQDEK
Sbjct: 1  MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEK 35

[Close]

BLAST of CmoCh12G000310 vs. ExPASy TrEMBL
Match: A0A6J1HET5 (uncharacterized protein LOC111462876 OS=Cucurbita moschata OX=3662 GN=LOC111462876 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-09
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MVKVATFFAMSLGAFVFWQTMDKLHVWIALRQDEK 36
          MVKVATFFAMSLGAFVFWQ+MDKLHVWIALRQDEK
Sbjct: 1  MVKVATFFAMSLGAFVFWQSMDKLHVWIALRQDEK 35

[Close]

BLAST of CmoCh12G000310 vs. TAIR 10
Match: AT1G67785.1 (unknown protein; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-09
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 1  MVKVATFFAMSLGAFVFWQTMDKLHVWIALRQDEK 36
          MVKV T+F M+L AF FWQ+MDK+HVWIAL QDEK
Sbjct: 1  MVKVLTYFGMTLAAFAFWQSMDKVHVWIALHQDEK 35

The following BLAST results are available for this feature:

BLAST of CmoCh12G000310 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh12G000310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GHQ2	5.3e-10	100.00	uncharacterized protein LOC111454278 OS=Cucurbita moschata OX=3662 GN=LOC1114542...	[more]
A0A6J1KBZ1	1.6e-09	97.14	uncharacterized protein LOC111491907 OS=Cucurbita maxima OX=3661 GN=LOC111491907...	[more]
A0A5A7V5Q7	1.6e-09	97.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LKK4	1.6e-09	97.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G349670 PE=4 SV=1	[more]
A0A6J1HET5	1.6e-09	97.14	uncharacterized protein LOC111462876 OS=Cucurbita moschata OX=3662 GN=LOC1114628...	[more]

BLAST of CmoCh12G000310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67785.1	2.0e-09	74.29	unknown protein; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37711	OS01G0908400 PROTEIN	coord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G000310.1	CmoCh12G000310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion