CmoCh11G019850 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G019850
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ras-related protein Rab11D
Location	Cmo_Chr11: 13626498 .. 13629999 (-)
RNA-Seq Expression	CmoCh11G019850
Synteny	CmoCh11G019850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATATATATATATATACGCATCCGCTTAAGCTCTTCTTCTTCTGGGAATTCTGATTTTTCTTCGACTTAGACGAAGAGTATTATGGCGGGTTATAAAGGTCACGATGAATATGATTATCTGTTTAAGCTGGTTTTGATCGGTGATTCAGGGGTGGGAAAATCAAACCTGCTCTCGAGGTTTACGAAGAACCAATTTAATTTAGAATCGAAGTCGACGATTGGGGTTGAGTTTGCTACCAAGAATTTGGAGATCGATGGGAAGGTAATCAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTGATTCTTCGTTGTTCATCTATAATTTCGATATCTCTTGAAATTCCGATTATAGTTGCATGGTTCCTTTGTTTCTAATCAATCGCTTCTCTGCTGCTCAAGAACTATGTCAGGATATCATTAGATTTACTCGAAATTTGTTGGAGGATTCTCTTTACACGGCCTTCTGCCTTTAATTTGTGTTTGAAGAAAGGGCGAGGGCGTTGCTTTGATTCTGATAAAGTTAGAATGCGTTCAACCAAGTAGCACTGATTGAAAATTATTCTTATCAGATTGAAAATTATACTTGGAAATCTGGTGGTTTAAAATGTTTAGTTTATTTTTTCAATGGCTTTCTAATTGCTGTTGAAGAATGAAATTTCTATTGGGAATCATTGTGTTTATGGTTTTGTTAGAAACTTGTTCAACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTTCTTCATTGGAAGAACTTGTGGTATGCTTGTTCATTGGACGAATTCCTCCTTTTGCTCCTCAGCGTACGGGGTGTTTTGTATCTATTGAGCAAAGACGGGTTGTAATTGTATAGCGGTATCTGAAAACGTATCTTGGGCATGCCCTAAATGTGCATCCTTGCATGGAAATTTGGGAAACTTTCTATGAGATCCCACGTCGGTTAGAAAAGGGAATGAAACATTTCTTACAAGGGTGTGAAAACCTCTACTTAGTAGACGCGTTTTGAAACCGTGAGGCTGACGCCGATACGTAACGGGCCAAAGTAGACAATATCTACTAGTGGTGGGTTTTTGGGCTGTTATAAATGGTATTAGAGCCAAACACCGGGCGGTGTGCCAGCGAGGACACTGGCTCTCAAGGTGGGTGGATTGTGAGATCCCGCATCGGTTGGAAAGGGGAACAAAACATTCCTTACAAGGGTGTGAAAACCTCTTTCTAGTAGATGCGTTTTAAAACTTTAAGGGGAAGCCCAAAAGGGAAAGCCAACATTCCTTACAAGGGTGTGAAAACCTCTTTCTAGTAGATGCGTTTTAAAACTTTGAGGGGAAGCCCAAAAGGGAAAGCCACCCAAATAGGACAATATCTGCTTGCAGTGGTCTTGGGCCATTACACTTTCAGATAAACTTTCGAGAAATAGGGAATTTTTTATTTCTGTTTAGATTGGTACTCGAAGGTCATAACTGTCCTCATCTGTTCAACATCCATTCTTTAGTTATGGGTCAAAATACATACAATGATTTAGTGTGTGCTCTTAGAATTGAGCCCAATTCAAACTTCACGGCTTGTCTTTACTGAATCCCACTGCTGCTGAAGCTTGACTATGATTGGAAACAGAGACCAAATATTGAAATATATGCAGAAGCTGGCATCCAATAGTTTCTGTATTTGTTCGAAGGTTTCATAGGCACCATAAGAAAGGAACGAGTGCCAATTAGGACGTTAGGCCCTGACGGAGGGTGGATTTTGAGATCCCACATCGGTTGGAGAGGAGAACGAAACGTTCTTTGTAAGGGTGTTGAACTTTTCTCTAGCAGATGCATTTTAGAAACCTTAAGGGGAAGCTCGAAAGGGAAAGCCCAAAATCTGCTAGTGGTGGGTTTGGGTCGTTACAAATTGTATTAGAGCCAGACACTAGGCGGTGTACTAGCGAGGACTATGACTTCGAAGGGGGTGGACACTAGGCGGTGTACCAGTGAGGACGTTGGGCCCAGAAGGGGGTGAATTGTGAGATACCACATCGATTGGAGAGAGGAACGAGTGTCAACAAGGACGTTGGGCTCCGAAGGGGGGTGGATTGTGAGATCTTACATTAGTTGGAGAGGAGAACGAAACATTAATCCAAATCCAATGGGTTGGCGGGTGTGTGGGAGGCGGGTTTGATTAGAAAAACGTACGCTTCTTTGTTTATTTTGACAGTTATTTATTGGCAGTTATTTGGATTTGTAGTTACCACTTAAAAGCTCTTGTTTGCTTCCTTCAGTTCAGATTAGCTCTTTCCGTGTAGGTACCGAGCGATAACCAGTGCTTACTACCGAGGAGCGGTAGGTGCTTTGCTTGTGTACGATGTCACTCGACGACCAACATTCGAGAACGCTGCAAGATGGTTAAAGGAATTGAGGAATCACACAGACCCAAACATGGTAGTGATGCTCATTGGCAACAAATGCGATTTACGACACCTCGTTCTCGTTCCAACCGAAGATGGAAAATCATTTTCCGAGATGGAGTCTTTATACTTCATGGAGACCTCTGCACTGGATGCAACGAACGTCGAGAGTGCTTTCACGGAGGTGCTCTCTCAAATATATCGCATCGTGTGCAAGAGATCAGTCGAGGCAGGCGACAGCGCAAGCGGTTCAACCCTTCCGTCGAAAGGCCAGACAATAGATGTCAAGGACGACTCGTCGGTTCTGAAGAGGATTGGATGTTGCTCCAGCTAAGTTAAAAGCTTCAAACATTTACACAGAAATACAGCAAGTGATTACTTATTTTGTATATTTGTATCTCTTTTGTAGAATAAGAGCATGGTTGTGGTTGGTTGTGGTTTGAAAGGCGCACTTCTTTAAAATTGAAAACCTCTTCTCAATGTTAGTCTCTCCGTTCAACCGGGAAAGTTGTGAATTTCTTATAAGGGTGTGAAAATCTCTCTCGCAGATGCGTTTTAAACTCTTGAGGGGAAG

mRNA sequence

TTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATATATATATATATACGCATCCGCTTAAGCTCTTCTTCTTCTGGGAATTCTGATTTTTCTTCGACTTAGACGAAGAGTATTATGGCGGGTTATAAAGGTCACGATGAATATGATTATCTGTTTAAGCTGGTTTTGATCGGTGATTCAGGGGTGGGAAAATCAAACCTGCTCTCGAGGTTTACGAAGAACCAATTTAATTTAGAATCGAAGTCGACGATTGGGGTTGAGTTTGCTACCAAGAATTTGGAGATCGATGGGAAGGTAATCAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTACCGAGCGATAACCAGTGCTTACTACCGAGGAGCGGTAGGTGCTTTGCTTGTGTACGATGTCACTCGACGACCAACATTCGAGAACGCTGCAAGATGGTTAAAGGAATTGAGGAATCACACAGACCCAAACATGGTAGTGATGCTCATTGGCAACAAATGCGATTTACGACACCTCGTTCTCGTTCCAACCGAAGATGGAAAATCATTTTCCGAGATGGAGTCTTTATACTTCATGGAGACCTCTGCACTGGATGCAACGAACGTCGAGAGTGCTTTCACGGAGGTGCTCTCTCAAATATATCGCATCGTGTGCAAGAGATCAGTCGAGGCAGGCGACAGCGCAAGCGGTTCAACCCTTCCGTCGAAAGGCCAGACAATAGATGTCAAGGACGACTCGTCGGTTCTGAAGAGGATTGGATGTTGCTCCAGCTAAGTTAAAAGCTTCAAACATTTACACAGAAATACAGCAAGTGATTACTTATTTTGTATATTTGTATCTCTTTTGTAGAATAAGAGCATGGTTGTGGTTGGTTGTGGTTTGAAAGGCGCACTTCTTTAAAATTGAAAACCTCTTCTCAATGTTAGTCTCTCCGTTCAACCGGGAAAGTTGTGAATTTCTTATAAGGGTGTGAAAATCTCTCTCGCAGATGCGTTTTAAACTCTTGAGGGGAAG

Coding sequence (CDS)

ATGGCGGGTTATAAAGGTCACGATGAATATGATTATCTGTTTAAGCTGGTTTTGATCGGTGATTCAGGGGTGGGAAAATCAAACCTGCTCTCGAGGTTTACGAAGAACCAATTTAATTTAGAATCGAAGTCGACGATTGGGGTTGAGTTTGCTACCAAGAATTTGGAGATCGATGGGAAGGTAATCAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTACCGAGCGATAACCAGTGCTTACTACCGAGGAGCGGTAGGTGCTTTGCTTGTGTACGATGTCACTCGACGACCAACATTCGAGAACGCTGCAAGATGGTTAAAGGAATTGAGGAATCACACAGACCCAAACATGGTAGTGATGCTCATTGGCAACAAATGCGATTTACGACACCTCGTTCTCGTTCCAACCGAAGATGGAAAATCATTTTCCGAGATGGAGTCTTTATACTTCATGGAGACCTCTGCACTGGATGCAACGAACGTCGAGAGTGCTTTCACGGAGGTGCTCTCTCAAATATATCGCATCGTGTGCAAGAGATCAGTCGAGGCAGGCGACAGCGCAAGCGGTTCAACCCTTCCGTCGAAAGGCCAGACAATAGATGTCAAGGACGACTCGTCGGTTCTGAAGAGGATTGGATGTTGCTCCAGCTAA

Protein sequence

MAGYKGHDEYDYLFKLVLIGDSGVGKSNLLSRFTKNQFNLESKSTIGVEFATKNLEIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELRNHTDPNMVVMLIGNKCDLRHLVLVPTEDGKSFSEMESLYFMETSALDATNVESAFTEVLSQIYRIVCKRSVEAGDSASGSTLPSKGQTIDVKDDSSVLKRIGCCSS

Homology

[Close]

BLAST of CmoCh11G019850 vs. ExPASy Swiss-Prot
Match: Q40194 (Ras-related protein Rab11D OS=Lotus japonicus OX=34305 GN=RAB11D PE=2 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 2.7e-104
Identity = 189/218 (86.70%), Postives = 203/218 (93.12%), Query Frame = 0


Query: 1   MAGYKGHDEYDYLFKLVLIGDSGVGKSNLLSRFTKNQFNLESKSTIGVEFATKNLEIDGK 60
           M GY+  DEYDYLFKLVLIGDSGVGKSNLLSRFTKN+FNLESKSTIGVEFATK L +D K
Sbjct: 1   MGGYRTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELRNHTDPNMV 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRR TFENAARWLKELR+HTDPN+V
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIV 120

Query: 121 VMLIGNKCDLRHLVLVPTEDGKSFSEMESLYFMETSALDATNVESAFTEVLSQIYRIVCK 180
           VMLIGNK DLRHLV VPTEDGKSF+E ESLYFMETSAL+ATNVE+AFTEVL+QIYRIV K
Sbjct: 121 VMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSK 180

Query: 181 RSVEAGDSASGSTLPSKGQTIDVKDDSSVLKRIGCCSS 219
           R+VEAGDS S S LPSKGQTI+VK+DSSVLKR GCCS+
Sbjct: 181 RAVEAGDSGSSSGLPSKGQTINVKEDSSVLKRFGCCST 218

[Close]

BLAST of CmoCh11G019850 vs. ExPASy Swiss-Prot
Match: Q40195 (Ras-related protein Rab11E OS=Lotus japonicus OX=34305 GN=RAB11E PE=2 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 1.0e-98
Identity = 181/218 (83.03%), Postives = 198/218 (90.83%), Query Frame = 0


Query: 1   MAGYKGHDEYDYLFKLVLIGDSGVGKSNLLSRFTKNQFNLESKSTIGVEFATKNLEIDGK 60
           MAGYK  DEYDYLFKLVLIGDSGVGKSNLLSRFT+N+FNLESKSTIGVEFATK+L IDGK
Sbjct: 1   MAGYKADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELRNHTDPNMV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR  TFE A RWLKELR+HTDPN+V
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIV 120

Query: 121 VMLIGNKCDLRHLVLVPTEDGKSFSEMESLYFMETSALDATNVESAFTEVLSQIYRIVCK 180
           VMLIGNK DLRHLV V TEDGK+F+E ESLYFMETSAL+ATNVE+AF+EVL+QIYRIV K
Sbjct: 121 VMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSK 180

Query: 181 RSVEAGDSASGSTLPSKGQTIDVKDDSSVLKRIGCCSS 219
           R+VEAGD  S S +PS+GQTI+V +DSSVL R  CCS+
Sbjct: 181 RAVEAGDRPSTSVVPSQGQTINVNEDSSVLNRYRCCSN 218

[Close]

BLAST of CmoCh11G019850 vs. ExPASy Swiss-Prot
Match: P28185 (Ras-related protein RABA1a OS=Arabidopsis thaliana OX=3702 GN=RABA1A PE=1 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 2.1e-96
Identity = 173/218 (79.36%), Postives = 197/218 (90.37%), Query Frame = 0


Query: 1   MAGYKGHDEYDYLFKLVLIGDSGVGKSNLLSRFTKNQFNLESKSTIGVEFATKNLEIDGK 60
           MAGY+  +EYDYLFKLVLIGDSGVGKSNLLSRFTKN+FNLESKSTIGVEFATK  +++GK
Sbjct: 1   MAGYRADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELRNHTDPNMV 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALL+YDVTR  TFENAARWL+ELR HTDPN+V
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIV 120

Query: 121 VMLIGNKCDLRHLVLVPTEDGKSFSEMESLYFMETSALDATNVESAFTEVLSQIYRIVCK 180
           VMLIGNKCDLRHLV V TE+ K+F+E ESLYFMETSALDATNVE+AFTEVL+QI++IV K
Sbjct: 121 VMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSK 180

Query: 181 RSVEAGDSASGSTLPSKGQTIDVKDDSSVLKRIGCCSS 219
           RSV+ G     + LP KG+TI+VK+D SVLKR+GCCS+
Sbjct: 181 RSVDGG--GESADLPGKGETINVKEDGSVLKRMGCCSN 216

[Close]

BLAST of CmoCh11G019850 vs. ExPASy Swiss-Prot
Match: Q01111 (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia OX=4092 GN=YPT3 PE=2 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 2.6e-94
Identity = 170/218 (77.98%), Postives = 191/218 (87.61%), Query Frame = 0


Query: 1   MAGYKGHDEYDYLFKLVLIGDSGVGKSNLLSRFTKNQFNLESKSTIGVEFATKNLEIDGK 60
           MAGY+  DEYDYLFKLVLIGDSGVGKSNLLSRFTKN+FNLESKSTIGVEFATK+L ID K
Sbjct: 1   MAGYRADDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELRNHTDPNMV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR  T+EN  RWLKELR+HTDPN+V
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIV 120

Query: 121 VMLIGNKCDLRHLVLVPTEDGKSFSEMESLYFMETSALDATNVESAFTEVLSQIYRIVCK 180
           VMLIGNK DLRHLV V T++ K  +E E LYFMETSAL+ATNVE+AFTE L+QIYRIV K
Sbjct: 121 VMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSK 180

Query: 181 RSVEAGDSASGSTLPSKGQTIDVKDDSSVLKRIGCCSS 219
           ++VEAGD  + S+ P KG+TI++KD+ S  K+ GCCSS
Sbjct: 181 KAVEAGDEGATSSAPPKGETINIKDEGSSWKKFGCCSS 218

[Close]

BLAST of CmoCh11G019850 vs. ExPASy Swiss-Prot
Match: Q39222 (Ras-related protein RABA1b OS=Arabidopsis thaliana OX=3702 GN=RABA1B PE=1 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 2.2e-93
Identity = 168/218 (77.06%), Postives = 193/218 (88.53%), Query Frame = 0


Query: 1   MAGYKGHDEYDYLFKLVLIGDSGVGKSNLLSRFTKNQFNLESKSTIGVEFATKNLEIDGK 60
           MAGY+  D+YDYLFK+VLIGDSGVGKSNLLSRFTKN+FNLESKSTIGVEFAT+ L++DGK
Sbjct: 1   MAGYRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELRNHTDPNMV 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRR TFEN  RWLKEL+NHTDPN+V
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIV 120

Query: 121 VMLIGNKCDLRHLVLVPTEDGKSFSEMESLYFMETSALDATNVESAFTEVLSQIYRIVCK 180
           VML+GNK DLRHL+ VPTEDGKS++E ESL FMETSAL+ATNVE AF EVL+QIYRI  K
Sbjct: 121 VMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSK 180

Query: 181 RSVEAGDSASGSTLPSKGQTIDVKDDSSVLKRIGCCSS 219
           + VEAG+  + S    KG+ I+VK+D S LK++GCCS+
Sbjct: 181 KQVEAGEDGNASV--PKGEKIEVKNDVSALKKLGCCSN 216

[Close]

BLAST of CmoCh11G019850 vs. ExPASy TrEMBL
Match: A0A6J1EWB3 (ras-related protein Rab11D OS=Cucurbita moschata OX=3662 GN=LOC111437146 PE=4 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 2.6e-118
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MAGYKGHDEYDYLFKLVLIGDSGVGKSNLLSRFTKNQFNLESKSTIGVEFATKNLEIDGK 60
           MAGYKGHDEYDYLFKLVLIGDSGVGKSNLLSRFTKNQFNLESKSTIGVEFATKNLEIDGK
Sbjct: 1   MAGYKGHDEYDYLFKLVLIGDSGVGKSNLLSRFTKNQFNLESKSTIGVEFATKNLEIDGK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELRNHTDPNMV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELRNHTDPNMV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELRNHTDPNMV 120

Query: 121 VMLIGNKCDLRHLVLVPTEDGKSFSEMESLYFMETSALDATNVESAFTEVLSQIYRIVCK 180
           VMLIGNKCDLRHLVLVPTEDGKSFSEMESLYFMETSALDATNVESAFTEVLSQIYRIVCK
Sbjct: 121 VMLIGNKCDLRHLVLVPTEDGKSFSEMESLYFMETSALDATNVESAFTEVLSQIYRIVCK 180

Query: 181 RSVEAGDSASGSTLPSKGQTIDVKDDSSVLKRIGCCSS 219
           RSVEAGDSASGSTLPSKGQTIDVKDDSSVLKRIGCCSS
Sbjct: 181 RSVEAGDSASGSTLPSKGQTIDVKDDSSVLKRIGCCSS 218

[Close]

BLAST of CmoCh11G019850 vs. ExPASy TrEMBL
Match: A0A6J1JNT4 (ras-related protein Rab11D OS=Cucurbita maxima OX=3661 GN=LOC111486147 PE=4 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 2.2e-117
Identity = 217/218 (99.54%), Postives = 217/218 (99.54%), Query Frame = 0


Query: 1   MAGYKGHDEYDYLFKLVLIGDSGVGKSNLLSRFTKNQFNLESKSTIGVEFATKNLEIDGK 60
           MAGYKG DEYDYLFKLVLIGDSGVGKSNLLSRFTKNQFNLESKSTIGVEFATKNLEIDGK
Sbjct: 1   MAGYKGQDEYDYLFKLVLIGDSGVGKSNLLSRFTKNQFNLESKSTIGVEFATKNLEIDGK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELRNHTDPNMV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELRNHTDPNMV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELRNHTDPNMV 120

Query: 121 VMLIGNKCDLRHLVLVPTEDGKSFSEMESLYFMETSALDATNVESAFTEVLSQIYRIVCK 180
           VMLIGNKCDLRHLVLVPTEDGKSFSEMESLYFMETSALDATNVESAFTEVLSQIYRIVCK
Sbjct: 121 VMLIGNKCDLRHLVLVPTEDGKSFSEMESLYFMETSALDATNVESAFTEVLSQIYRIVCK 180

Query: 181 RSVEAGDSASGSTLPSKGQTIDVKDDSSVLKRIGCCSS 219
           RSVEAGDSASGSTLPSKGQTIDVKDDSSVLKRIGCCSS
Sbjct: 181 RSVEAGDSASGSTLPSKGQTIDVKDDSSVLKRIGCCSS 218

[Close]

BLAST of CmoCh11G019850 vs. ExPASy TrEMBL
Match: A0A1S3C059 (ras-related protein Rab11D OS=Cucumis melo OX=3656 GN=LOC103495492 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 2.4e-111
Identity = 209/219 (95.43%), Postives = 212/219 (96.80%), Query Frame = 0


Query: 1   MAGYKGHDEYDYLFKLVLIGDSGVGKSNLLSRFTKNQFNLESKSTIGVEFATKNLEIDGK 60
           MAGYKGHDEYDYLFKLVLIGDSGVGKSNLLSRFT+NQFNLESKSTIGVEFATK+LEIDGK
Sbjct: 1   MAGYKGHDEYDYLFKLVLIGDSGVGKSNLLSRFTRNQFNLESKSTIGVEFATKSLEIDGK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELRNHTDPNMV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELRNHTDPNMV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELRNHTDPNMV 120

Query: 121 VMLIGNKCDLRHLVLVPTEDGKSFSEMESLYFMETSALDATNVESAFTEVLSQIYRIVCK 180
           VMLIGNKCDLRHLVLVPTEDGKSF+E ESLYFMETSALDATNVESAFTEVLSQIYRIV K
Sbjct: 121 VMLIGNKCDLRHLVLVPTEDGKSFAERESLYFMETSALDATNVESAFTEVLSQIYRIVSK 180

Query: 181 RSVEAGDSASGS-TLPSKGQTIDVKDDSSVLKRIGCCSS 219
           RSVEAGD  S S TLP KGQTIDVKDDSSVLKRIGCCSS
Sbjct: 181 RSVEAGDIGSASMTLPPKGQTIDVKDDSSVLKRIGCCSS 219

[Close]

BLAST of CmoCh11G019850 vs. ExPASy TrEMBL
Match: A0A5A7SMX1 (Ras-related protein Rab11D OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003220 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 3.1e-111
Identity = 208/219 (94.98%), Postives = 213/219 (97.26%), Query Frame = 0


Query: 1   MAGYKGHDEYDYLFKLVLIGDSGVGKSNLLSRFTKNQFNLESKSTIGVEFATKNLEIDGK 60
           MAGYKGHDEYDYLFKLVLIGDSGVGKSNLLSRFT+NQFNLESKSTIGVEFATK+LEIDGK
Sbjct: 1   MAGYKGHDEYDYLFKLVLIGDSGVGKSNLLSRFTRNQFNLESKSTIGVEFATKSLEIDGK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELRNHTDPNMV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELR+HTDPNMV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELRDHTDPNMV 120

Query: 121 VMLIGNKCDLRHLVLVPTEDGKSFSEMESLYFMETSALDATNVESAFTEVLSQIYRIVCK 180
           VMLIGNKCDLRHL+LVPTEDGKSF+E ESLYFMETSALDATNVESAFTEVLSQIYRIV K
Sbjct: 121 VMLIGNKCDLRHLILVPTEDGKSFAERESLYFMETSALDATNVESAFTEVLSQIYRIVSK 180

Query: 181 RSVEAGDSASGS-TLPSKGQTIDVKDDSSVLKRIGCCSS 219
           RSVEAGD  S S TLPSKGQTIDVKDDSSVLKRIGCCSS
Sbjct: 181 RSVEAGDIGSASMTLPSKGQTIDVKDDSSVLKRIGCCSS 219

[Close]

BLAST of CmoCh11G019850 vs. ExPASy TrEMBL
Match: A0A0A0K737 (Small GTP-binding protein OS=Cucumis sativus OX=3659 GN=Csa_7G049180 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 3.1e-111
Identity = 208/219 (94.98%), Postives = 213/219 (97.26%), Query Frame = 0


Query: 1   MAGYKGHDEYDYLFKLVLIGDSGVGKSNLLSRFTKNQFNLESKSTIGVEFATKNLEIDGK 60
           MAGYKGHDEYDYLFKLVLIGDSGVGKSNLLSRFT+NQFNLESKSTIGVEFATK+LEIDGK
Sbjct: 1   MAGYKGHDEYDYLFKLVLIGDSGVGKSNLLSRFTRNQFNLESKSTIGVEFATKSLEIDGK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELRNHTDPNMV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELR+HTDPNMV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELRDHTDPNMV 120

Query: 121 VMLIGNKCDLRHLVLVPTEDGKSFSEMESLYFMETSALDATNVESAFTEVLSQIYRIVCK 180
           VMLIGNKCDLRHL+LVPTEDGKSF+E ESLYFMETSALDATNVESAFTEVLSQIYRIV K
Sbjct: 121 VMLIGNKCDLRHLILVPTEDGKSFAERESLYFMETSALDATNVESAFTEVLSQIYRIVSK 180

Query: 181 RSVEAGDSASGS-TLPSKGQTIDVKDDSSVLKRIGCCSS 219
           RSVEAGD  S S TLPSKGQTIDVKDDSSVLKRIGCCSS
Sbjct: 181 RSVEAGDIGSASTTLPSKGQTIDVKDDSSVLKRIGCCSS 219

[Close]

BLAST of CmoCh11G019850 vs. TAIR 10
Match: AT1G06400.1 (Ras-related small GTP-binding family protein )

HSP 1 Score: 353.2 bits (905), Expect = 1.5e-97
Identity = 173/218 (79.36%), Postives = 197/218 (90.37%), Query Frame = 0


Query: 1   MAGYKGHDEYDYLFKLVLIGDSGVGKSNLLSRFTKNQFNLESKSTIGVEFATKNLEIDGK 60
           MAGY+  +EYDYLFKLVLIGDSGVGKSNLLSRFTKN+FNLESKSTIGVEFATK  +++GK
Sbjct: 1   MAGYRADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELRNHTDPNMV 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALL+YDVTR  TFENAARWL+ELR HTDPN+V
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIV 120

Query: 121 VMLIGNKCDLRHLVLVPTEDGKSFSEMESLYFMETSALDATNVESAFTEVLSQIYRIVCK 180
           VMLIGNKCDLRHLV V TE+ K+F+E ESLYFMETSALDATNVE+AFTEVL+QI++IV K
Sbjct: 121 VMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSK 180

Query: 181 RSVEAGDSASGSTLPSKGQTIDVKDDSSVLKRIGCCSS 219
           RSV+ G     + LP KG+TI+VK+D SVLKR+GCCS+
Sbjct: 181 RSVDGG--GESADLPGKGETINVKEDGSVLKRMGCCSN 216

[Close]

BLAST of CmoCh11G019850 vs. TAIR 10
Match: AT1G16920.1 (RAB GTPase homolog A1B )

HSP 1 Score: 343.2 bits (879), Expect = 1.5e-94
Identity = 168/218 (77.06%), Postives = 193/218 (88.53%), Query Frame = 0


Query: 1   MAGYKGHDEYDYLFKLVLIGDSGVGKSNLLSRFTKNQFNLESKSTIGVEFATKNLEIDGK 60
           MAGY+  D+YDYLFK+VLIGDSGVGKSNLLSRFTKN+FNLESKSTIGVEFAT+ L++DGK
Sbjct: 1   MAGYRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELRNHTDPNMV 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRR TFEN  RWLKEL+NHTDPN+V
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIV 120

Query: 121 VMLIGNKCDLRHLVLVPTEDGKSFSEMESLYFMETSALDATNVESAFTEVLSQIYRIVCK 180
           VML+GNK DLRHL+ VPTEDGKS++E ESL FMETSAL+ATNVE AF EVL+QIYRI  K
Sbjct: 121 VMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSK 180

Query: 181 RSVEAGDSASGSTLPSKGQTIDVKDDSSVLKRIGCCSS 219
           + VEAG+  + S    KG+ I+VK+D S LK++GCCS+
Sbjct: 181 KQVEAGEDGNASV--PKGEKIEVKNDVSALKKLGCCSN 216

[Close]

BLAST of CmoCh11G019850 vs. TAIR 10
Match: AT5G45750.1 (RAB GTPase homolog A1C )

HSP 1 Score: 330.5 bits (846), Expect = 1.0e-90
Identity = 164/218 (75.23%), Postives = 189/218 (86.70%), Query Frame = 0


Query: 1   MAGYKGHDEYDYLFKLVLIGDSGVGKSNLLSRFTKNQFNLESKSTIGVEFATKNLEIDGK 60
           MAGY+  DEYDYLFK+VLIGDSGVGKSNLLSRFTKN+F+LESKSTIGVEFAT++L +D K
Sbjct: 1   MAGYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELRNHTDPNMV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR  TFEN   WLKELRNHTDPN+V
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIV 120

Query: 121 VMLIGNKCDLRHLVLVPTEDGKSFSEMESLYFMETSALDATNVESAFTEVLSQIYRIVCK 180
           VML+GNK DLRHLV V TED KSF+E ESLYFMETSAL+ATNVE+AF EVL+QI+ IV K
Sbjct: 121 VMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSK 180

Query: 181 RSVEAGDSASGSTLPSKGQTIDVKDDSSVLKRIGCCSS 219
           +++EA  ++  + +PSKG  ID+  D S +K+ GCCS+
Sbjct: 181 KAMEA--ASESANVPSKGDKIDIGKDVSAVKKGGCCSN 216

[Close]

BLAST of CmoCh11G019850 vs. TAIR 10
Match: AT4G18800.1 (RAB GTPase homolog A1D )

HSP 1 Score: 326.2 bits (835), Expect = 1.9e-89
Identity = 161/218 (73.85%), Postives = 192/218 (88.07%), Query Frame = 0


Query: 1   MAGYKGHDEYDYLFKLVLIGDSGVGKSNLLSRFTKNQFNLESKSTIGVEFATKNLEIDGK 60
           MAGY+  D+YDYLFK+VLIGDSGVGKSNLLSRFT+N+F+LESKSTIGVEFAT++L ++ K
Sbjct: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVNEK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELRNHTDPNMV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR  TFEN  RWL+ELR+HTDPN+V
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120

Query: 121 VMLIGNKCDLRHLVLVPTEDGKSFSEMESLYFMETSALDATNVESAFTEVLSQIYRIVCK 180
           VML+GNK DLRHLV V TED KSF+E ESLYFMETSAL++TNVE+AF+EVL+QIY +V K
Sbjct: 121 VMLVGNKSDLRHLVAVQTEDAKSFAENESLYFMETSALESTNVENAFSEVLTQIYHVVSK 180

Query: 181 RSVEAGDSASGSTLPSKGQTIDVKDDSSVLKRIGCCSS 219
           +++EAG+ +    +PSKG+ IDV  D S +K+ GCCS+
Sbjct: 181 KAMEAGEDS--GNVPSKGEKIDV--DVSAVKKTGCCSN 214

[Close]

BLAST of CmoCh11G019850 vs. TAIR 10
Match: AT5G60860.1 (RAB GTPase homolog A1F )

HSP 1 Score: 315.5 bits (807), Expect = 3.4e-86
Identity = 155/220 (70.45%), Postives = 189/220 (85.91%), Query Frame = 0


Query: 1   MAGYKGHDEYDYLFKLVLIGDSGVGKSNLLSRFTKNQFNLESKSTIGVEFATKNLEIDGK 60
           MA Y+  DEYDYLFK+VLIGDSGVGKSNLLSRFT+N+F+LESKSTIGVEFAT+++ +D K
Sbjct: 1   MAAYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRPTFENAARWLKELRNHTDPNMV 120
           ++KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR  TFEN  RWLKELR+HTD N+V
Sbjct: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIV 120

Query: 121 VMLIGNKCDLRHLVLVPTEDGKSFSEMESLYFMETSALDATNVESAFTEVLSQIYRIVCK 180
           +M +GNK DLRHL  V TED K+F+E E+ +FMETSAL++ NVE+AFTEVLSQIYR+V +
Sbjct: 121 IMFVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLSQIYRVVSR 180

Query: 181 RSVEAGDSASGSTLPSKGQTIDV--KDDSSVLKRIGCCSS 219
           ++++ GD    + LP KGQTI+V  KDD S +K++GCCS+
Sbjct: 181 KALDIGDDP--AALP-KGQTINVGSKDDVSAVKKVGCCSN 217

The following BLAST results are available for this feature:

BLAST of CmoCh11G019850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q40194	2.7e-104	86.70	Ras-related protein Rab11D OS=Lotus japonicus OX=34305 GN=RAB11D PE=2 SV=1	[more]
Q40195	1.0e-98	83.03	Ras-related protein Rab11E OS=Lotus japonicus OX=34305 GN=RAB11E PE=2 SV=1	[more]
P28185	2.1e-96	79.36	Ras-related protein RABA1a OS=Arabidopsis thaliana OX=3702 GN=RABA1A PE=1 SV=1	[more]
Q01111	2.6e-94	77.98	Ras-related protein YPT3 OS=Nicotiana plumbaginifolia OX=4092 GN=YPT3 PE=2 SV=1	[more]
Q39222	2.2e-93	77.06	Ras-related protein RABA1b OS=Arabidopsis thaliana OX=3702 GN=RABA1B PE=1 SV=1	[more]

BLAST of CmoCh11G019850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EWB3	2.6e-118	100.00	ras-related protein Rab11D OS=Cucurbita moschata OX=3662 GN=LOC111437146 PE=4 SV...	[more]
A0A6J1JNT4	2.2e-117	99.54	ras-related protein Rab11D OS=Cucurbita maxima OX=3661 GN=LOC111486147 PE=4 SV=1	[more]
A0A1S3C059	2.4e-111	95.43	ras-related protein Rab11D OS=Cucumis melo OX=3656 GN=LOC103495492 PE=4 SV=1	[more]
A0A5A7SMX1	3.1e-111	94.98	Ras-related protein Rab11D OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A0A0K737	3.1e-111	94.98	Small GTP-binding protein OS=Cucumis sativus OX=3659 GN=Csa_7G049180 PE=4 SV=1	[more]

BLAST of CmoCh11G019850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06400.1	1.5e-97	79.36	Ras-related small GTP-binding family protein	[more]
AT1G16920.1	1.5e-94	77.06	RAB GTPase homolog A1B	[more]
AT5G45750.1	1.0e-90	75.23	RAB GTPase homolog A1C	[more]
AT4G18800.1	1.9e-89	73.85	RAB GTPase homolog A1D	[more]
AT5G60860.1	3.4e-86	70.45	RAB GTPase homolog A1F	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 152..174 score: 41.19 coord: 14..35 score: 56.7 coord: 37..53 score: 35.85 coord: 117..130 score: 50.41 coord: 55..77 score: 55.43
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 14..177 e-value: 5.8E-107 score: 371.3
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 19..210 e-value: 1.2E-4 score: 17.0
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 11..177 e-value: 7.7E-25 score: 98.5
None	No IPR available	PANTHER	PTHR47979:SF27	RAS-RELATED PROTEIN RIC2	coord: 1..218
None	No IPR available	PANTHER	PTHR47979	DRAB11-RELATED	coord: 1..218
None	No IPR available	PROSITE	PS51419	RAB	coord: 9..216 score: 34.577835
None	No IPR available	PROSITE	PS51420	RHO	coord: 7..179 score: 9.391998
None	No IPR available	CDD	cd01868	Rab11_like	coord: 11..175 e-value: 4.41127E-126 score: 351.092
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 16..173 e-value: 1.9E-12 score: 39.6
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 15..175 e-value: 3.3E-60 score: 202.4
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 8..210 score: 15.551174
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 7..216 e-value: 4.7E-69 score: 233.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 9..179
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 12..170 e-value: 6.1E-39 score: 131.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G019850.1	CmoCh11G019850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005768	endosome
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding