CmoCh11G019810 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G019810
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr11: 13608897 .. 13611185 (-)
RNA-Seq Expression	CmoCh11G019810
Synteny	CmoCh11G019810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGCTTTTGATGGCGTTGCTTACTGCACAGTTATTGGTGCTTTTCTCGAGTTAGTTGCGTTTGAAGGGCAAAATGTTTGCATAGAATAGATGATAAAGAATGGCGTGGGAATTGATTAGTTTATAATACATTTGTTAATTTGTACTGTAAAGAAGATGAGTTGGAGGCTGCATTTAAGCTGTTGGACGAGCTAGAGTCGTCTTCAGTCTTGGTTGTCTGTTGTGTTCCCCATAAGGTGGAATCCGTATCTCGAGTCTTGCTTATATAGTTTCATTAGCCCCGACCTAGATACGAGCACGCCGAGCTTTTCAGCGAGAAGCAAGAAAATCGAAAGGACAGAGAAAAAAAGCAAGATAGACTTCCGTGTGGGCAGGCCTACTATCCATTTTGTTACTATGGAGCTGGGCGGTAAACGAGTAAATGCGATCCCGCCCTCCATCAGCCGGTGTGTGTGAGCTTCACTCCTTATAGCTCTATACCGCCACCGGTCCCTTGTGTGAATCTATGATAACTAAAGGGTTGTGCAGGGCTGGTAATATCGAGGGGGCCCGACGGCATTTGAATGACATGTATATGACAGGTTTTGCTTCAAACTTGGTAGCCTTAAATTGTCTAGTTGACAGGTTGTGTAGAGCTGGACAAATTGACCAAGCAATGAATTGTTTGAATCAATGGAAACAAGGGATTCTTTTATGTACTCCTCCTTCGTGCACAATCTTTGCAAGGCAAGGAGATTCCGTTGTGCGTCTGAGTTATTGCTTTTGTGTTTAAAAGATGGCACAAAGGTTCTTAAGTTGACACAACGTGCGGTTATTGAACGTGTAATAGCCTTTTCCCTCAAGGTTTTTAAAACGCTTCTGCTAAGGAGAGATTTTTACACTCTTATAAAGAATGTGGGATCTCACACTCCACTCCCCTTTGGAGCCCACGTCCTCGCTGACACTTATTTCCCTCTCCAATCGATGTGGGATCTCACAAAACAAGACTTGTTCTATAGGTTGTATGACTGTGTCGTCGAGTTCTAAGGAAAGGTATACCGACCCTGTTAGCCTCGTTCAAAATCTTGTCCTTAAAGTTGCTTTAGTTGGACTTCTATGCTATTTTGGAGACTGAAGTATCCTCTGTGTGGACTAGTGGCTGAACTTTTGCTTTTGTGTGAGCAGGTTTATTTTATCACATCATACGGCTTCATTTTCAGCATGTTCTTGAGAATCTATGGGGATGTCTTATGGCCTCCAGCTCCTGGTGCACATTCAATTCAGGAACTTCTCTGTTTCCTCTCAAGTATTCACTTTTCAAAGTTTATTTATCGTCACTATTTTTAACCGTGCCCAAGTACATTTTTGTGAGATCCCCCATCAGTTGGAGAGAAGAATGAAACAGGAGAATGAAACATTCTTTATAAGAGTGTGGATATCTCTCCCTACCAGACGCGTTTTAAAAACCTTGAGGAGAAGCCCAAAAAAAATAATATTTGTTAGCGGTAGGCTTGTGCTATTACAAAGGGTATCAGAACCAGGTTTCGGGCGATGTGCTAACGAGGTGGCTGAGCCTTGAAGGCGGTGGATACGAGGCGGTGTGCCAACAAGGACGCTGGCCCCAAAGGGGGTAGATTTGGGAGTCTCACATCGATTGGAGAAGGGAACGAGTGCCAGTGAGAACGCTGGACCTCGAAGGAAGGTGGATTGTGAGATCTCACATCAATTAGGGAGGAGAACGAAACATTCTTTTACAAAGGTGTGGAAACCTCTCCCTAGCAGACACGTTTTAAAAAAATTGGGAGATTACAGTTTTGTCAATCGTAAATGAACGAAGATGAGAAATTTCCTTGGCATTTGGTATGTTTTCTTCCCTTTTAAATACTATGTTTGTACCAACCTAATCACAGTTCAATTGGTTAACGTTATTAAAGCGTTATATCATCGACCGAAGAGGTCATGAATTCAAGTTCCCTCCCCCACACAGTATTATACTCAAAAGCTATAGCATGCAAGTATAAGCTATAATTTTTGACTTTATTGCTGGTTAATGTGATGATAGGATGTTCGAGCAAAGCCATCACTCATCATCAGAAGAAATTGAATCGAAAAAACCATGGGAGGAGGAAGGCTAGAACCGTGCATGTCAATAGAAAATTACAGAACCGCTGCCCCCAGCAACATGATAACGGAACCTCGTTGTCCAAGGACACTGCCGACACGCTTGAGCTTGCTACCATCCTCCTCTCATTCCTCTGTATCATGAAAACGCTGCTCCTGTTTCCCCGCACGTTTGTAGCTGTCTGA

mRNA sequence

ATGTATGCTTTTGATGGCGTTGCTTACTGCACAGTTATTGGTGCTTTTCTCGAGTTAGTTGCGTTTGAAGGGCAAAATCCCCGACCTAGATACGAGCACGCCGAGCTTTTCAGCGAGAAGCAAGAAAATCGAAAGGACAGAGAAAAAAAGCAAGATAGACTTCCGTGTGGGCAGGCCTACTATCCATTTTGTTACTATGGAGCTGGGCGGGCTGGTAATATCGAGGGGGCCCGACGGCATTTGAATGACATGTATATGACAGGATGTTCGAGCAAAGCCATCACTCATCATCAGAAGAAATTGAATCGAAAAAACCATGGGAGGAGGAAGGCTAGAACCGTGCATGTCAATAGAAAATTACAGAACCGCTGCCCCCAGCAACATGATAACGGAACCTCGTTGTCCAAGGACACTGCCGACACGCTTGAGCTTGCTACCATCCTCCTCTCATTCCTCTGTATCATGAAAACGCTGCTCCTGTTTCCCCGCACGTTTGTAGCTGTCTGA

Coding sequence (CDS)

ATGTATGCTTTTGATGGCGTTGCTTACTGCACAGTTATTGGTGCTTTTCTCGAGTTAGTTGCGTTTGAAGGGCAAAATCCCCGACCTAGATACGAGCACGCCGAGCTTTTCAGCGAGAAGCAAGAAAATCGAAAGGACAGAGAAAAAAAGCAAGATAGACTTCCGTGTGGGCAGGCCTACTATCCATTTTGTTACTATGGAGCTGGGCGGGCTGGTAATATCGAGGGGGCCCGACGGCATTTGAATGACATGTATATGACAGGATGTTCGAGCAAAGCCATCACTCATCATCAGAAGAAATTGAATCGAAAAAACCATGGGAGGAGGAAGGCTAGAACCGTGCATGTCAATAGAAAATTACAGAACCGCTGCCCCCAGCAACATGATAACGGAACCTCGTTGTCCAAGGACACTGCCGACACGCTTGAGCTTGCTACCATCCTCCTCTCATTCCTCTGTATCATGAAAACGCTGCTCCTGTTTCCCCGCACGTTTGTAGCTGTCTGA

Protein sequence

MYAFDGVAYCTVIGAFLELVAFEGQNPRPRYEHAELFSEKQENRKDREKKQDRLPCGQAYYPFCYYGAGRAGNIEGARRHLNDMYMTGCSSKAITHHQKKLNRKNHGRRKARTVHVNRKLQNRCPQQHDNGTSLSKDTADTLELATILLSFLCIMKTLLLFPRTFVAV

Homology

[Close]

BLAST of CmoCh11G019810 vs. ExPASy TrEMBL
Match: A0A6J1D2P0 (putative pentatricopeptide repeat-containing protein At4g17915 OS=Momordica charantia OX=3673 GN=LOC111016743 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-04
Identity = 44/111 (39.64%), Postives = 52/111 (46.85%), Query Frame = 0


Query: 2   YAFDGVAYCTVIGAFLELVAFEGQNP------RPRYEHAELFSEKQENRKDREKKQDR-- 61
           YAFDG AYCTVIGAFL+L  FE  N       R R     +F     +   +E K D   
Sbjct: 248 YAFDGFAYCTVIGAFLKLGRFEEANVCMEQMIRNRMGIDLVFYNTFIHLYCKEGKLDAAY 307

Query: 62  ----------LPCGQAYYPFCYYGAGRAGNIEGARRHLNDMYMTGCSSKAI 95
                     L      +     G  RAGNI+GARRHLN MY TG +S  +
Sbjct: 308 KLLDEIESRGLEFDNYTHTIITDGLCRAGNIDGARRHLNYMYTTGLASNLV 358

The following BLAST results are available for this feature:

BLAST of CmoCh11G019810 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh11G019810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D2P0	2.0e-04	39.64	putative pentatricopeptide repeat-containing protein At4g17915 OS=Momordica char...	[more]

BLAST of CmoCh11G019810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G019810.1	CmoCh11G019810.1	mRNA