CmoCh11G019530 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G019530
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	CASP-like protein
Location	Cmo_Chr11: 13460236 .. 13460574 (-)
RNA-Seq Expression	CmoCh11G019530
Synteny	CmoCh11G019530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATAGCAGGGCTATTCGCCGTCGCCGCGGCCGCCGCCGCCTCCACCATCGTCCTGTCAACTCCGCCGTCCTCCGCCGGCCTCCACAAAACCACCTTCTCCCATCAGGTAAGAAGACACTAACTTCTCATTTCTCGATACCCTTTTATAATCAGACATCTTCGAAAAGGAAATTCTCGGGAATAATCGATGTGGGACGAAATTCAGGAAAAGGTCAACAGAGACGAGGAAATTAGTCCGTCGAGAAGATCCCCGCCGTCCACGGCGCCCGATCACTTTGATCCGAGATTCGATGGGTTGCGATTCATTGAAACTCTAGTCACTGCTCATAGATAA

mRNA sequence

ATGAAGATAGCAGGGCTATTCGCCGTCGCCGCGGCCGCCGCCGCCTCCACCATCGTCCTGTCAACTCCGCCGTCCTCCGCCGGCCTCCACAAAACCACCTTCTCCCATCAGGAAAAGGTCAACAGAGACGAGGAAATTAGTCCGTCGAGAAGATCCCCGCCGTCCACGGCGCCCGATCACTTTGATCCGAGATTCGATGGGTTGCGATTCATTGAAACTCTAGTCACTGCTCATAGATAA

Coding sequence (CDS)

ATGAAGATAGCAGGGCTATTCGCCGTCGCCGCGGCCGCCGCCGCCTCCACCATCGTCCTGTCAACTCCGCCGTCCTCCGCCGGCCTCCACAAAACCACCTTCTCCCATCAGGAAAAGGTCAACAGAGACGAGGAAATTAGTCCGTCGAGAAGATCCCCGCCGTCCACGGCGCCCGATCACTTTGATCCGAGATTCGATGGGTTGCGATTCATTGAAACTCTAGTCACTGCTCATAGATAA

Protein sequence

MKIAGLFAVAAAAAASTIVLSTPPSSAGLHKTTFSHQEKVNRDEEISPSRRSPPSTAPDHFDPRFDGLRFIETLVTAHR

Homology

[Close]

BLAST of CmoCh11G019530 vs. ExPASy TrEMBL
Match: A0A6J1GMF4 (uncharacterized protein LOC111455296 OS=Cucurbita moschata OX=3662 GN=LOC111455296 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.6e-20
Identity = 62/80 (77.50%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 1  MKIAGLFAVAAAAAASTIVLSTPPSSAGLHKTTFSHQEKV-NRDEEISPSRRSPPSTAPD 60
          MK  GLFA A+ AAAS   LS P SSAG+ KTTFSHQEKV +RDEE SPSR SPPSTAPD
Sbjct: 3  MKKTGLFA-ASVAAASATALSAPSSSAGVLKTTFSHQEKVISRDEETSPSRISPPSTAPD 62

Query: 61 HFDPRFDGLRFIETLVTAHR 80
           F PRFDGLRFIETLVTAHR
Sbjct: 63 QFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of CmoCh11G019530 vs. ExPASy TrEMBL
Match: A0A6J1I0M0 (uncharacterized protein LOC111468357 OS=Cucurbita maxima OX=3661 GN=LOC111468357 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-18
Identity = 61/80 (76.25%), Postives = 63/80 (78.75%), Query Frame = 0


Query: 1  MKIAGLFAVAAAAAASTIVLSTPPSSAGLHKTTFSHQEKV-NRDEEISPSRRSPPSTAPD 60
          MK  GLFA A+ AAAS   LS P SSAG+ KTTFSHQEKV  RDEE SPSR SPPSTA D
Sbjct: 3  MKKTGLFA-ASVAAASATALSAPSSSAGVLKTTFSHQEKVIIRDEESSPSRISPPSTAAD 62

Query: 61 HFDPRFDGLRFIETLVTAHR 80
           F PRFDGLRFIETLVTAHR
Sbjct: 63 QFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of CmoCh11G019530 vs. ExPASy TrEMBL
Match: A0A0A0K2C1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047970 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.3e-18
Identity = 58/80 (72.50%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 1  MKIAGLFAVAAAAAASTIVLSTPPSSAGLHKTTFSHQEKVNRDEE-ISPSRRSPPSTAPD 60
          MK  GLFA A+ AAAS   LS PP+S GL KT FS QEKV RDEE  +P+RRSPPSTA D
Sbjct: 1  MKKTGLFA-ASVAAASATALSAPPASPGLLKTNFSRQEKVTRDEESTTPARRSPPSTAAD 60

Query: 61 HFDPRFDGLRFIETLVTAHR 80
           F PRFDGLRFIETLVTAHR
Sbjct: 61 QFAPRFDGLRFIETLVTAHR 79

[Close]

BLAST of CmoCh11G019530 vs. ExPASy TrEMBL
Match: A0A5D3C7A0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003450 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.7e-17
Identity = 59/81 (72.84%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 1  MKIAGLFAVAAAAAASTIVLSTPPSSAGLHKTTFSHQEKV-NRDEEI-SPSRRSPPSTAP 60
          MK  GLFA A+ AAAS   LS PPSS    KT FSHQEKV  RDEEI +P+RRSPPSTA 
Sbjct: 1  MKKTGLFA-ASVAAASATALSAPPSSPSTLKTNFSHQEKVIARDEEITTPTRRSPPSTAS 60

Query: 61 DHFDPRFDGLRFIETLVTAHR 80
          D F PRFDGLRFIETLVTAHR
Sbjct: 61 DQFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of CmoCh11G019530 vs. ExPASy TrEMBL
Match: A0A6A4LEC7 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_10451 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.8e-08
Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 1  MKIAGLFAVAAAAAASTIVLSTP-PSSAGLHKTTFSHQEKVNRDEEISPSRRSPPSTAPD 60
          MKI+G+ A A+AAAAS   +S+P PSS  L  +    + + + D+ +S   R  PS A D
Sbjct: 2  MKISGILAAASAAAASAAAISSPTPSSTSLPNS----KSERSYDKAVSSKSRVNPSAASD 61

Query: 61 HFDPRFDGLRFIETLVTAHR 80
           + PRFDGLRFIETLVTAHR
Sbjct: 62 KYAPRFDGLRFIETLVTAHR 77

[Close]

BLAST of CmoCh11G019530 vs. TAIR 10
Match: AT4G28290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 45 Blast hits to 45 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 2.4e-05
Identity = 32/83 (38.55%), Postives = 44/83 (53.01%), Query Frame = 0


Query: 1  MKIAGLFAVAAAAAASTIVLSTPPSSAGLHKTTFSHQEKVNRDEEISPSRRSPPSTAPD- 60
          MK  G+ A + + AAS   +S   ++  +   +FS  E     +E    +R    ++ D 
Sbjct: 1  MKKTGIIAASISVAASATAISAGSTNTSV---SFSSPESNLSRQEAKEKQRKKKGSSEDG 60

Query: 61 ---HFDPRFDGLRFIETLVTAHR 80
              F PRFDGLRFIETLVTAHR
Sbjct: 61 GDEKFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of CmoCh11G019530 vs. TAIR 10
Match: AT5G42110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 2.0e-04
Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 3  IAGLFAVAAAAAASTIVLSTPPSSAGLHKTTFSHQEKVNRDEEISPSRRSPPSTAPDHFD 62
          +A + AV+ AA +S+ +L  PP S                  ++  SR++  S   D+F+
Sbjct: 8  VASVIAVSTAALSSSSIL--PPVS-----------------PKVWESRKTNGS---DNFE 62

Query: 63 PRFDGLRFIETLVTAHR 80
          PRFDGLRFIETLVTAHR
Sbjct: 68 PRFDGLRFIETLVTAHR 62

The following BLAST results are available for this feature:

BLAST of CmoCh11G019530 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh11G019530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GMF4	4.6e-20	77.50	uncharacterized protein LOC111455296 OS=Cucurbita moschata OX=3662 GN=LOC1114552...	[more]
A0A6J1I0M0	1.5e-18	76.25	uncharacterized protein LOC111468357 OS=Cucurbita maxima OX=3661 GN=LOC111468357...	[more]
A0A0A0K2C1	4.3e-18	72.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047970 PE=4 SV=1	[more]
A0A5D3C7A0	4.7e-17	72.84	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6A4LEC7	6.8e-08	51.25	Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3...	[more]

BLAST of CmoCh11G019530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28290.1	2.4e-05	38.55	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G42110.1	2.0e-04	41.56	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..49
None	No IPR available	PANTHER	PTHR34683	EXPRESSED PROTEIN-RELATED	coord: 1..79
None	No IPR available	PANTHER	PTHR34683:SF2	EXPRESSED PROTEIN	coord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G019530.1	CmoCh11G019530.1	mRNA