CmoCh11G019300 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G019300
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionprotein THYLAKOID FORMATION1, chloroplastic-like
LocationCmo_Chr11: 13362845 .. 13366235 (-)
RNA-Seq ExpressionCmoCh11G019300
SyntenyCmoCh11G019300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCTGTTAATTCCGTGTCATTCTCAACGGTAAGTCAGTTTTCTGATCGAAGGTCGCCGGTTCCGTCGGCTCGTTCACTCGCCTCGAATTTCGACGGGTTTCGTTTCCGTTCTAGTGTTTTCTATCATCATTCGGGAGTTCGAACCTCGAGTTTCAGTTCTCGCTTGGTCATTCATTGCATGTCCGCCGGAACAGGTAGCTTCTGGTGATTTGTTTTCCTTACTCGCTTACTAGACTGTTCCTTTGCTAGATTATGGTAGCAGAAACGAATTGGCTTGTTTCGATGATTTCGATGTGAACTTGTGTTTTGTTTGTTCGTTAATTGTTGAGATGGATCGTTATGGACGGAAATTTAGGTTTTAAGTAACAATTAGGCTTTCAATAGTTCGGTTTGATCAATTCTAAACTTGTTCAGTATGTTGAGATTTCTCTAGTTCGATTTCTTAGTATTTGAGTGTAGAAAATGATGTGCTATTTTCGGATTTTAGATGTGACGACTGTAGCTGAGACTAAATTGAACTTTCTAAAGGCGTATAAACGACCTATCCCCAGCATATACAACTCTGTTCTGCAAGAGTTGATTGTGCAGCAGCATTTGATGAGGTATAAGAGGACGTACCGTTATGATCCTGTTTTCGCCCTCGGTTTTGTTACTGTATATGATCAGCTTATGGATGGGTACCCTAGCGATGAGGATCGGGAGGCCATTTTCCAAGCCTACATTAAGGCGTTGAATGAGGATCCAGAGCAATATAGGTTTGGCCATGTATTCCCCTTTGCTTTTACCATCCCTGATCTCTATCTCTTCTTGCCATCTAATAAATTCACAAGCCTTGTTCATAGATAGTAAACACTGTTAAGTTGAAAAAAACATGACATGATTCCACTTACAGCAAAAATACGACGATTCTTATTTCAACTTTAATCTTCTTTCCTAGTATTTCACATCTTAATTTGGACTTAGTTGTCTAAATGACTAGATTATTTGGTCAAATCACATGGTAATCAAATTAACGGATGTTTACTCTTTGTTCAATATCTCCAAGAGTGAAATTTTCTTCACTGGAAATTATAATCCATCCTTCGACCATTATTCCAATAATTTCAAGAAGGTTTTTCTTCATTTTTAGCTCTACTTTCTGTTATACCGTCCAGAATTGATGCTCAAAAATTGGAAGAGTGGGCTCGGTCTCAGTCTGCAGCTTCATTGGTTGAATTTGCATCAAAAGAAGGAGAAGTTGAGAGTGTTTTGAAAGACATTGCAGAACGAGCTGCGAGTAAGGGGAGTTTCAGTTACAGCCGATTTTTTGCTATTGGGCTATTTCGACTCCTCGAATTGGCAAATGCTACTGAACCCAGTATCTTGGAAAAGGTTTATTTTATCTTCCTTTTTGTGATATAGCTTTTAAGTAGATGACGATTTTGAGGTGATAGTATATCAAGCCTATTATTGCTAAATTAAACATTTACATGATAGCCAGCCCCTCCTCTCATAGTACTTTTACTTATAGATTATATTCTTTCTCTGAGTGCTGCCATTCGTAAAGTGTAATTGTGTTTCTTGCTCATTATTATCTTTTTACTCATTAGAGAAATTGGATCCTGATGGAAGAGTGCTTAACCTTATTCAGTTCGATAGAATTAGGTTCAAGGTACTCTTTCCTGCATAAGTCTCCATTTTACTTTTCTAGGTAACACCAATCTTTTTGTAGTATTTGGTTGAAGAGAAATATGAGCTAACCATTTTTTGGAACATTCCCCTTTGCTCGGGACAATCCCACATACACAATTACAGTGTTTTTGTGGGATTTCCTTCTCCTTTGTGGAGATTGTACTGATCTTGTGGATGTAGTTTATGCTCTTTAGTAGTCTCAGCTGGTCCTTTTCATTCAGTTTATTAGCTCTTGTGAAGGGAAACATACATATGTTCCACTGCCCCCATCAACAACAGTTATCATGAACTATTGCTTTAATTGGCCATCTCTATTTAGCGTGTCTATCTCCAAACATACTTTTATTTTTCTAAAGCCATGTAATGGAGATTTTACCAAGTGTTGACATCTAACACTTTGCTGCTTCTGAACAGCTCTGTGCCGCTTTAAATGTTGACAAAAAAAGTGTGGACCGAGACCTTGATGTATACCGCAACCTGCTTTCGAAGTTGGTTCAGGCGAAGGAGCTCCTAAAGGAATACGTTGATAGGTAAGAGATTTTTAAGTTCATGGTTCCTGGCCTGGTAGATTAACATACCCACAATCTGCTCTTTCACACCACCATATTTTCTTGGATTTTATGAACCCATAATCGTTTTGAAAACAATCCAGTATTTGTCAAATCTTCTGCAACTCACCGTCATATCATTTATATTCACTAGATATCCACCGGTTGGCTGTGTTTTAAGATGAAAGTGATGTTTTATGAAAATTTAAATGAAGTATTTCTGCATTCAATGTTCATGATATGTATACAGTGGTGACCTTAGATTAAGTGGAAAATTTCGGGTCGTTACATGGATCTTGAGTGAGGGTGGCTGTGTTTTAAGATGAAGGTGATGTTTTATGAAAGTTTAAATGAAGTATTTCTGCATTCAATGTTCATGATATGTATACAGTAGCGGCCTTAAATTAAGTAGAAAATTTCGGATCGTTACATGGATCTTGAGTGAGGCTGATTGTGTTTTAAAATGAAGGTGATGTTTTATGAAAGTTTAAATGAAGTATTTTTGCATTCAATGTTCATAACATGTATACGGTGACGACCTTAAATTAAGTAAAAAATTTCGAGTTGTTACATGGATCTTGAGTGAGGTTGGCTGTGTTTTAAGATGAAGGTGATGTTATGAAAGTTTAAATGAAGTATTTCTGCATTCAATGGTTATGATATGTATACAATGGCGACTTTAAATGAAGTAGAAAATTTCGGATTATTACATGGGTCTTGGGTCTTGAGTCTTGTGGAGGCCTAAAAATGAGGCAGAATTGGGTGGATCATGGTATAATTAACCAGTGCTCTTCCATTCTGTTTTTGCCTATAGAGAGAAGAAGAAAAGAGATGAGAGGGCTGGATCACAGACAGCTAACGAGGCCGTAACAAAATGAATGATTGGGTGAATACAGCATAGAGAGTGGTTTTTGAGAGCTGATGACATCAATTGGAGCACTCACCGCCTAATTTGAGATAAGACTTTAAAGAGTTATAGCAATATTCTAAATACCTGATAGATATGCATTTGTACTGTATTGTTGGGTCTTCTGCATTTGGTAAATTTTGTATTCTGCCAGCTTCTACTTTTATTCTCATTTGTATTACATATTTTGAGTGCAATTGTCTATACAAATGCTTTCGCACTCTGTGCAGTAATCATATTTGTCTCTCTCTTGACCACCA

mRNA sequence

ATGGCGGCTGTTAATTCCGTGTCATTCTCAACGGTAAGTCAGTTTTCTGATCGAAGGTCGCCGGTTCCGTCGGCTCGTTCACTCGCCTCGAATTTCGACGGGTTTCGTTTCCGTTCTAGTGTTTTCTATCATCATTCGGGAGTTCGAACCTCGAGTTTCAGTTCTCGCTTGGTCATTCATTGCATGTCCGCCGGAACAGATGTGACGACTGTAGCTGAGACTAAATTGAACTTTCTAAAGGCGTATAAACGACCTATCCCCAGCATATACAACTCTGTTCTGCAAGAGTTGATTGTGCAGCAGCATTTGATGAGGTATAAGAGGACGTACCGTTATGATCCTGTTTTCGCCCTCGGTTTTGTTACTGTATATGATCAGCTTATGGATGGGTACCCTAGCGATGAGGATCGGGAGGCCATTTTCCAAGCCTACATTAAGGCGTTGAATGAGGATCCAGAGCAATATAGAATTGATGCTCAAAAATTGGAAGAGTGGGCTCGGTCTCAGTCTGCAGCTTCATTGGTTGAATTTGCATCAAAAGAAGGAGAAGTTGAGAGTGTTTTGAAAGACATTGCAGAACGAGCTGCGAGTAAGGGGAGTTTCAGTTACAGCCGATTTTTTGCTATTGGGCTATTTCGACTCCTCGAATTGGCAAATGCTACTGAACCCAGTATCTTGGAAAAGCTCTGTGCCGCTTTAAATGTTGACAAAAAAAGTGTGGACCGAGACCTTGATGTATACCGCAACCTGCTTTCGAAGTTGGTTCAGGCGAAGGAGCTCCTAAAGGAATACGTTGATAGAGAGAAGAAGAAAAGAGATGAGAGGGCTGGATCACAGACAGCTAACGAGGCCGTAACAAAATGAATGATTGGGTGAATACAGCATAGAGAGTGGTTTTTGAGAGCTGATGACATCAATTGGAGCACTCACCGCCTAATTTGAGATAAGACTTTAAAGAGTTATAGCAATATTCTAAATACCTGATAGATATGCATTTGTACTGTATTGTTGGGTCTTCTGCATTTGGTAAATTTTGTATTCTGCCAGCTTCTACTTTTATTCTCATTTGTATTACATATTTTGAGTGCAATTGTCTATACAAATGCTTTCGCACTCTGTGCAGTAATCATATTTGTCTCTCTCTTGACCACCA

Coding sequence (CDS)

ATGGCGGCTGTTAATTCCGTGTCATTCTCAACGGTAAGTCAGTTTTCTGATCGAAGGTCGCCGGTTCCGTCGGCTCGTTCACTCGCCTCGAATTTCGACGGGTTTCGTTTCCGTTCTAGTGTTTTCTATCATCATTCGGGAGTTCGAACCTCGAGTTTCAGTTCTCGCTTGGTCATTCATTGCATGTCCGCCGGAACAGATGTGACGACTGTAGCTGAGACTAAATTGAACTTTCTAAAGGCGTATAAACGACCTATCCCCAGCATATACAACTCTGTTCTGCAAGAGTTGATTGTGCAGCAGCATTTGATGAGGTATAAGAGGACGTACCGTTATGATCCTGTTTTCGCCCTCGGTTTTGTTACTGTATATGATCAGCTTATGGATGGGTACCCTAGCGATGAGGATCGGGAGGCCATTTTCCAAGCCTACATTAAGGCGTTGAATGAGGATCCAGAGCAATATAGAATTGATGCTCAAAAATTGGAAGAGTGGGCTCGGTCTCAGTCTGCAGCTTCATTGGTTGAATTTGCATCAAAAGAAGGAGAAGTTGAGAGTGTTTTGAAAGACATTGCAGAACGAGCTGCGAGTAAGGGGAGTTTCAGTTACAGCCGATTTTTTGCTATTGGGCTATTTCGACTCCTCGAATTGGCAAATGCTACTGAACCCAGTATCTTGGAAAAGCTCTGTGCCGCTTTAAATGTTGACAAAAAAAGTGTGGACCGAGACCTTGATGTATACCGCAACCTGCTTTCGAAGTTGGTTCAGGCGAAGGAGCTCCTAAAGGAATACGTTGATAGAGAGAAGAAGAAAAGAGATGAGAGGGCTGGATCACAGACAGCTAACGAGGCCGTAACAAAATGA

Protein sequence

MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIHCMSAGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASKEGEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK
Homology
BLAST of CmoCh11G019300 vs. ExPASy Swiss-Prot
Match: Q7XAB8 (Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum OX=4113 GN=THF1 PE=2 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 2.9e-106
Identity = 204/288 (70.83%), Postives = 246/288 (85.42%), Query Frame = 0

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAV SVSFS ++Q ++R+S V S+RS+    D FRFRS+  +    VR+S+ +SR V+H
Sbjct: 1   MAAVTSVSFSAITQSAERKSSVSSSRSI----DTFRFRSNFSFDSVNVRSSNSTSRFVVH 60

Query: 61  C-MSAGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALG 120
           C  S+  D+ TVA+TKL FL AYKRPIP++YN+VLQELIVQQHL RYK++Y+YDPVFALG
Sbjct: 61  CTSSSAADLPTVADTKLKFLTAYKRPIPTVYNTVLQELIVQQHLTRYKKSYQYDPVFALG 120

Query: 121 FVTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFAS 180
           FVTVYDQLM+GYPS+EDR AIF+AYI+AL EDPEQYR DAQKLEEWAR+Q+A +LV+F+S
Sbjct: 121 FVTVYDQLMEGYPSEEDRNAIFKAYIEALKEDPEQYRADAQKLEEWARTQNANTLVDFSS 180

Query: 181 KEGEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKS 240
           KEGE+E++ KDIA+RA +K  F YSR FA+GLFRLLELAN T+P+ILEKLCAALNV+KKS
Sbjct: 181 KEGEIENIFKDIAQRAGTKDGFCYSRLFAVGLFRLLELANVTDPTILEKLCAALNVNKKS 240

Query: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           VDRDLDVYRNLLSKLVQAKELLKEYV+REKKKR ER  +Q ANE VTK
Sbjct: 241 VDRDLDVYRNLLSKLVQAKELLKEYVEREKKKRGERE-TQKANETVTK 283

BLAST of CmoCh11G019300 vs. ExPASy Swiss-Prot
Match: Q9SKT0 (Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THF1 PE=1 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 1.3e-101
Identity = 201/286 (70.28%), Postives = 243/286 (84.97%), Query Frame = 0

Query: 3   AVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIHCM 62
           A++S+SF  + Q SD+ S   S+R LAS       R    +    + + S +S+ +IHCM
Sbjct: 5   AISSLSFPALGQ-SDKISNFASSRPLAS-----AIRICTKFSRLSLNSRS-TSKSLIHCM 64

Query: 63  SAGT-DVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGFV 122
           S  T DV  V+ETK  FLKAYKRPIPSIYN+VLQELIVQQHLMRYK+TYRYDPVFALGFV
Sbjct: 65  SNVTADVPPVSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFV 124

Query: 123 TVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASKE 182
           TVYDQLM+GYPSD+DR+AIF+AYI+ALNEDP+QYRIDAQK+EEWARSQ++ASLV+F+SKE
Sbjct: 125 TVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKE 184

Query: 183 GEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSVD 242
           G++E+VLKDIA RA SK  FSYSRFFA+GLFRLLELA+AT+P++L+KLCA+LN++KKSVD
Sbjct: 185 GDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVD 244

Query: 243 RDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           RDLDVYRNLLSKLVQAKELLKEYV+REKKK+ ERA SQ ANE ++K
Sbjct: 245 RDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISK 283

BLAST of CmoCh11G019300 vs. ExPASy Swiss-Prot
Match: Q84PB7 (Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=THF1 PE=2 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 8.5e-98
Identity = 194/288 (67.36%), Postives = 236/288 (81.94%), Query Frame = 0

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAA++S+ F+ + + +D R   PS  + A+         SV             SR V+ 
Sbjct: 1   MAAISSLPFAALRRAADCR---PSTAAAAAGAGAGAVVLSV--------RPRRGSRSVVR 60

Query: 61  CMSAGTDV-TTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALG 120
           C++   DV  TVAETK+NFLK+YKRPI SIY++VLQEL+VQQHLMRYK TY+YD VFALG
Sbjct: 61  CVATAGDVPPTVAETKMNFLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQYDAVFALG 120

Query: 121 FVTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFAS 180
           FVTVYDQLM+GYPS+EDR+AIF+AYI ALNEDPEQYR DAQK+EEWARSQ+  SLVEF+S
Sbjct: 121 FVTVYDQLMEGYPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQNGNSLVEFSS 180

Query: 181 KEGEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKS 240
           K+GE+E++LKDI+ERA  KGSFSYSRFFA+GLFRLLELANATEP+IL+KLCAALN++K+S
Sbjct: 181 KDGEIEAILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKLCAALNINKRS 240

Query: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           VDRDLDVYRN+LSKLVQAKELLKEYV+REKKKR+ER+ +  +NEAVTK
Sbjct: 241 VDRDLDVYRNILSKLVQAKELLKEYVEREKKKREERSETPKSNEAVTK 277

BLAST of CmoCh11G019300 vs. ExPASy Swiss-Prot
Match: B0C3M8 (Protein Thf1 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=thf1 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 9.3e-36
Identity = 84/219 (38.36%), Postives = 136/219 (62.10%), Query Frame = 0

Query: 67  DVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQ 126
           ++ TV++TK  F   + RP+ S+Y  V++EL+V+ HL+R    +RYDP+FALG  T +D+
Sbjct: 3   NLRTVSDTKRAFYSIHTRPVNSVYRRVVEELMVEMHLLRVNEDFRYDPIFALGVTTSFDR 62

Query: 127 LMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEF---ASKEG- 186
            MDGY  + D++AIF A  KA   DP Q + D Q+L E A+S+SA  ++++   A+  G 
Sbjct: 63  FMDGYQPENDKDAIFSAICKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANSGG 122

Query: 187 -EVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELA--NATE-----PSILEKLCAALN 246
            E++  L++IA+       F YSR FAIGLF LLEL+  N T+        L  +C  LN
Sbjct: 123 DELQWQLRNIAQNP----KFKYSRLFAIGLFTLLELSEGNITQDEESLAEFLPNICTVLN 182

Query: 247 VDKKSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRD 274
           + +  + +DL++YR  L K+ Q ++ + + ++ +KK+R+
Sbjct: 183 ISESKLQKDLEIYRGNLDKIAQVRQAMDDILEAQKKRRE 217

BLAST of CmoCh11G019300 vs. ExPASy Swiss-Prot
Match: Q116P5 (Protein Thf1 OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=thf1 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.6e-32
Identity = 80/216 (37.04%), Postives = 129/216 (59.72%), Query Frame = 0

Query: 70  TVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQLMD 129
           TV++TK  F   + RPI SIYN V++EL+V+ HL+     Y Y+P +ALG VT +D+ M 
Sbjct: 6   TVSDTKKTFYHFHTRPINSIYNRVIEELLVEMHLISVNVDYSYNPFYALGVVTAFDRFMQ 65

Query: 130 GYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEF--ASKEGEVESV 189
           GY   ED+ +IF A I+   EDP +YR DA+ LE+ A   SA+ ++ +   SK  +    
Sbjct: 66  GYSPQEDKTSIFNALIQGQEEDPNKYRSDAKGLEDLAGKISASDILSWICLSKNIDNTQY 125

Query: 190 LKDIAERAASKGSFSYSRFFAIGLFRLLELANA-------TEPSILEKLCAALNVDKKSV 249
           L+D     +    F YSR FAIGLF LLE+ +             L+K+C +LN+ ++ +
Sbjct: 126 LQDDLRAISENSKFRYSRLFAIGLFTLLEIVDTELIKEQEKRTEALKKICQSLNLVEEKL 185

Query: 250 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERA 277
            +D+D+Y + L ++ QA+  +++ +   +KKR++R+
Sbjct: 186 LKDIDLYLSNLERVAQARSAMEDTLAAMRKKREKRS 221

BLAST of CmoCh11G019300 vs. ExPASy TrEMBL
Match: A0A6J1ES50 (protein THYLAKOID FORMATION1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111437233 PE=3 SV=1)

HSP 1 Score: 543.1 bits (1398), Expect = 6.9e-151
Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 0

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH
Sbjct: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60

Query: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180
           VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK
Sbjct: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180

Query: 181 EGEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240
           EGEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV
Sbjct: 181 EGEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 287

BLAST of CmoCh11G019300 vs. ExPASy TrEMBL
Match: A0A6J1JMT7 (protein THYLAKOID FORMATION1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111486096 PE=3 SV=1)

HSP 1 Score: 540.8 bits (1392), Expect = 3.4e-150
Identity = 284/287 (98.95%), Postives = 286/287 (99.65%), Query Frame = 0

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAVNSVSFSTVSQFSDRRSP+PSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH
Sbjct: 1   MAAVNSVSFSTVSQFSDRRSPIPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60

Query: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMS GTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180
           VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK
Sbjct: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180

Query: 181 EGEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240
           EGEVES+LKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV
Sbjct: 181 EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 287

BLAST of CmoCh11G019300 vs. ExPASy TrEMBL
Match: A0A5D3C7D3 (Protein THYLAKOID FORMATION1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003760 PE=3 SV=1)

HSP 1 Score: 506.5 bits (1303), Expect = 7.2e-140
Identity = 261/287 (90.94%), Postives = 280/287 (97.56%), Query Frame = 0

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAVNS+SFST++Q SDRR PVPS+RSL+SNFDGFRFR+S+F H+S VR S+FSSR+VIH
Sbjct: 1   MAAVNSISFSTLNQCSDRRFPVPSSRSLSSNFDGFRFRTSLFTHYSRVRPSTFSSRMVIH 60

Query: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMSAGTDVTTVAETKLNFLKAYKRPIPSIYN+VLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180
           VTVYDQLM+GYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQ+AASLVEFAS+
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQTAASLVEFASR 180

Query: 181 EGEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240
           EGEVES+LKDIAERA SKG+FSYSRFFAIGLFRLLELANATEPSILEKLCAALN+DKK V
Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           DRDLDVYRNLLSKLVQAKELLKEY+DREKKKRDERAGSQTANEA+TK
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYIDREKKKRDERAGSQTANEAITK 287

BLAST of CmoCh11G019300 vs. ExPASy TrEMBL
Match: A0A1S3C0V5 (protein THYLAKOID FORMATION1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495547 PE=3 SV=1)

HSP 1 Score: 506.5 bits (1303), Expect = 7.2e-140
Identity = 261/287 (90.94%), Postives = 280/287 (97.56%), Query Frame = 0

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAVNS+SFST++Q SDRR PVPS+RSL+SNFDGFRFR+S+F H+S VR S+FSSR+VIH
Sbjct: 1   MAAVNSISFSTLNQCSDRRFPVPSSRSLSSNFDGFRFRTSLFTHYSRVRPSTFSSRMVIH 60

Query: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMSAGTDVTTVAETKLNFLKAYKRPIPSIYN+VLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180
           VTVYDQLM+GYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQ+AASLVEFAS+
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQTAASLVEFASR 180

Query: 181 EGEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240
           EGEVES+LKDIAERA SKG+FSYSRFFAIGLFRLLELANATEPSILEKLCAALN+DKK V
Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           DRDLDVYRNLLSKLVQAKELLKEY+DREKKKRDERAGSQTANEA+TK
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYIDREKKKRDERAGSQTANEAITK 287

BLAST of CmoCh11G019300 vs. ExPASy TrEMBL
Match: A0A6J1C3B8 (protein THYLAKOID FORMATION1, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007981 PE=3 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 1.6e-139
Identity = 264/287 (91.99%), Postives = 278/287 (96.86%), Query Frame = 0

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAVNSVSFS +SQ S+RR  VPSARSLASNFDGFRFR+SVF H+SGVRTSS+SSR+V+H
Sbjct: 1   MAAVNSVSFSALSQCSERRLLVPSARSLASNFDGFRFRTSVFCHYSGVRTSSYSSRMVVH 60

Query: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMSAGTDVTTVAETK NFLK YKRPIPSIYN+VLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKANFLKVYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180
           VTVYDQLM+GYPSDEDREAIFQAYIKALNEDPEQYRIDA+KLEEWARSQ+AASLVEFASK
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTAASLVEFASK 180

Query: 181 EGEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240
           EGEVES+LKDIAERA  KGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNV+KKSV
Sbjct: 181 EGEVESILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVNKKSV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEA+TK
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITK 287

BLAST of CmoCh11G019300 vs. TAIR 10
Match: AT2G20890.1 (photosystem II reaction center PSB29 protein )

HSP 1 Score: 370.9 bits (951), Expect = 9.1e-103
Identity = 201/286 (70.28%), Postives = 243/286 (84.97%), Query Frame = 0

Query: 3   AVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIHCM 62
           A++S+SF  + Q SD+ S   S+R LAS       R    +    + + S +S+ +IHCM
Sbjct: 5   AISSLSFPALGQ-SDKISNFASSRPLAS-----AIRICTKFSRLSLNSRS-TSKSLIHCM 64

Query: 63  SAGT-DVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGFV 122
           S  T DV  V+ETK  FLKAYKRPIPSIYN+VLQELIVQQHLMRYK+TYRYDPVFALGFV
Sbjct: 65  SNVTADVPPVSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFV 124

Query: 123 TVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASKE 182
           TVYDQLM+GYPSD+DR+AIF+AYI+ALNEDP+QYRIDAQK+EEWARSQ++ASLV+F+SKE
Sbjct: 125 TVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKE 184

Query: 183 GEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSVD 242
           G++E+VLKDIA RA SK  FSYSRFFA+GLFRLLELA+AT+P++L+KLCA+LN++KKSVD
Sbjct: 185 GDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVD 244

Query: 243 RDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           RDLDVYRNLLSKLVQAKELLKEYV+REKKK+ ERA SQ ANE ++K
Sbjct: 245 RDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISK 283

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q7XAB82.9e-10670.83Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum OX=4113 GN=THF1... [more]
Q9SKT01.3e-10170.28Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=... [more]
Q84PB78.5e-9867.36Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica OX=3... [more]
B0C3M89.3e-3638.36Protein Thf1 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=thf1 PE=3 ... [more]
Q116P51.6e-3237.04Protein Thf1 OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=thf1 PE=3 ... [more]
Match NameE-valueIdentityDescription
A0A6J1ES506.9e-151100.00protein THYLAKOID FORMATION1, chloroplastic-like OS=Cucurbita moschata OX=3662 G... [more]
A0A6J1JMT73.4e-15098.95protein THYLAKOID FORMATION1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=... [more]
A0A5D3C7D37.2e-14090.94Protein THYLAKOID FORMATION1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A1S3C0V57.2e-14090.94protein THYLAKOID FORMATION1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495... [more]
A0A6J1C3B81.6e-13991.99protein THYLAKOID FORMATION1, chloroplastic isoform X1 OS=Momordica charantia OX... [more]
Match NameE-valueIdentityDescription
AT2G20890.19.1e-10370.28photosystem II reaction center PSB29 protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 247..274
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 268..287
NoneNo IPR availablePANTHERPTHR34793:SF7PHOTOSYSTEM II BIOGENESIS PROTEINcoord: 1..286
IPR017499Protein Thf1PFAMPF11264ThylakoidFormatcoord: 70..275
e-value: 4.0E-76
score: 255.5
IPR017499Protein Thf1TIGRFAMTIGR03060TIGR03060coord: 67..272
e-value: 7.8E-48
score: 161.0
IPR017499Protein Thf1PANTHERPTHR34793PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTICcoord: 1..286
IPR017499Protein Thf1HAMAPMF_01843Thf1coord: 65..273
score: 22.360189

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G019300.1CmoCh11G019300.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010207 photosystem II assembly
biological_process GO:0045037 protein import into chloroplast stroma
biological_process GO:0045038 protein import into chloroplast thylakoid membrane
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0015979 photosynthesis