CmoCh11G019200 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G019200
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Transcription factor bHLH117
Location	Cmo_Chr11: 13316642 .. 13318099 (-)
RNA-Seq Expression	CmoCh11G019200
Synteny	CmoCh11G019200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACTTCTGCTGGCGACGATGCTTCCTCCACTGTTTGGGATGATGCTTGCTTCGACGCCATGTTTTCTGGCGTCAGTCTCCAGTCGTTTCTCGCGGGTGGTAGCCAGAGCCACACATTGTTGCCGTCTCTGTTCGGAGGATGCTACGTTGCCGATTCTCTTACTTTTCCTGACGGTATGACGTCGTTGTATCCTCAGGTAAGCTCTAACTTCGTCGCTGAAAGTACCGCCTCTTCCGATGGTCCCTTCTTCAAGTTGCCTAAATCCGAGCCGATGAGTGTGTATGAACAAACGGAGACTCAAGAATCCACGTTCCTTTTTCATGATTCGACGTCGTTTCCTCACTTGCCCGATCTCCGTTCCTTGGAGCAATGTTCGTCGTCGTTTAACAAGCGNCCCCCCCCCCCCCGCCACCTGCACCTGTCGGTTACATTCCTCCTTGTACGGCCCTAATTACCGTCATCATTCCTTCTGTTTTCCTTTTGTCTTCTTCTTCCTCACCATTACAAAATCATATATATATATATATATATATATCTGTATACACAATTCCTTGTTCTCTGGTTCTTTTTAGGTCTCATGATGGTGGAAAGTTCTGCTGGAGACGATGGTTCCACCAATGTCTGGGATGATGCTTGCTTCAACGCCATGTTTTCCGGCGTAAGTCTTCAGTCGTTTCTCGCCGGTGGTAATCAGAATCATTGTCCCTTGTTGTTGCCGTCTCTGTTTGGAGGAGGCTACATTTCCGATGCGCTTACTTTCCCCGATGCTTCAACGTCGTTGTATCCTCAGCCGAGCTCTAACTTCGTCGCTGAAAGTATTGAATCATCCGAGCCGATGAATGTGTATGAACAAACGGCGTTTGTTTTTCATGCTTCGACGTCGTTTCCTCACTTGCCGGACCTGCGTTCTTTGGGGCAATGTTCGTCGTCGTTTAACAAGCGTGCTCGAGTCGATTCTGTGTGGAATCCGTTGCAGATGGTGGAGCCGATGATGCGAGAGTGTGAGGTAAGTAGCTCCGCTGCTGTGTCTCGTACTGTTCAAATTCCTCGCAGCGCATTAGCTCGACAGCGTCGGCAGAAATTGAGCGACAAGACGCGTTGCTTGCAGAAGCTACTGCCGTGGGACAAGAAGATGGATATCTCTACAATGCTTGAAGGAGCGTTTAAGTACGTCAAGTTCCTTCAGGCGCAACTCCTTGCTCTTCAATCCATGCCTTGCGAGTCGGCCATTTCTACTAATTCGAATCATCACATAAGCGGCGTGTTTGGTGGATTGGAGAGGCTGAGCAGAAACCAACTATTGCAAGTTTTGGTTAACTCGCCGGTCGCTCAGACGATGCTTTGTTCGCAGAGTTGTTGCGTTTTCTCGGCAGAACAGTTGGGGCTTATCCAGAAGATCGCAGAGAAAAGAGTTCTTCTGCAGCAGATCTCAACGTTCCGACATAAGCCCTAG

mRNA sequence

ATGGAGACTTCTGCTGGCGACGATGCTTCCTCCACTGTTTGGGATGATGCTTGCTTCGACGCCATGTTTTCTGGCGTCAGTCTCCAGTCGTTTCTCGCGGGTGGTAGCCAGAGCCACACATTGTTGCCGTCTCTGTTCGGAGGATGCTACGTTGCCGATTCTCTTACTTTTCCTGACGGTATGACGTCGTTGTATCCTCAGGTAAGCTCTAACTTCGTCGCTGAAAGTACCGCCTCTTCCGATGGTCCCTTCTTCAAGTTGCCTAAATCCGAGCCGATGAGTGTGTATGAACAAACGGAGACTCAAGAATCCACGTTCCTTTTTCATGATTCGACGTCGTTTCCTCACTTGCCCGATCTCCGTCTCATGATGGTGGAAAGTTCTGCTGGAGACGATGGTTCCACCAATGTCTGGGATGATGCTTGCTTCAACGCCATGTTTTCCGGCGTAAGTCTTCAGTCGTTTCTCGCCGGTGGTAATCAGAATCATTGTCCCTTGTTGTTGCCGTCTCTGTTTGGAGGAGGCTACATTTCCGATGCGCTTACTTTCCCCGATGCTTCAACGTCGTTGTATCCTCAGCCGAGCTCTAACTTCGTCGCTGAAAGTATTGAATCATCCGAGCCGATGAATGTGTATGAACAAACGGCGTTTGTTTTTCATGCTTCGACGTCGTTTCCTCACTTGCCGGACCTGCGTTCTTTGGGGCAATGTTCGTCGTCGTTTAACAAGCGTGCTCGAGTCGATTCTGTGTGGAATCCGTTGCAGATGGTGGAGCCGATGATGCGAGAGTGTGAGGTAAGTAGCTCCGCTGCTGTGTCTCGTACTGTTCAAATTCCTCGCAGCGCATTAGCTCGACAGCGTCGGCAGAAATTGAGCGACAAGACGCGTTGCTTGCAGAAGCTACTGCCGTGGGACAAGAAGATGGATATCTCTACAATGCTTGAAGGAGCGTTTAAGTACGTCAAGTTCCTTCAGGCGCAACTCCTTGCTCTTCAATCCATGCCTTGCGAGTCGGCCATTTCTACTAATTCGAATCATCACATAAGCGGCGTGTTTGGTGGATTGGAGAGGCTGAGCAGAAACCAACTATTGCAAGTTTTGGTTAACTCGCCGGTCGCTCAGACGATGCTTTGTTCGCAGAGTTGTTGCGTTTTCTCGGCAGAACAGTTGGGGCTTATCCAGAAGATCGCAGAGAAAAGAGTTCTTCTGCAGCAGATCTCAACGTTCCGACATAAGCCCTAG

Coding sequence (CDS)

ATGGAGACTTCTGCTGGCGACGATGCTTCCTCCACTGTTTGGGATGATGCTTGCTTCGACGCCATGTTTTCTGGCGTCAGTCTCCAGTCGTTTCTCGCGGGTGGTAGCCAGAGCCACACATTGTTGCCGTCTCTGTTCGGAGGATGCTACGTTGCCGATTCTCTTACTTTTCCTGACGGTATGACGTCGTTGTATCCTCAGGTAAGCTCTAACTTCGTCGCTGAAAGTACCGCCTCTTCCGATGGTCCCTTCTTCAAGTTGCCTAAATCCGAGCCGATGAGTGTGTATGAACAAACGGAGACTCAAGAATCCACGTTCCTTTTTCATGATTCGACGTCGTTTCCTCACTTGCCCGATCTCCGTCTCATGATGGTGGAAAGTTCTGCTGGAGACGATGGTTCCACCAATGTCTGGGATGATGCTTGCTTCAACGCCATGTTTTCCGGCGTAAGTCTTCAGTCGTTTCTCGCCGGTGGTAATCAGAATCATTGTCCCTTGTTGTTGCCGTCTCTGTTTGGAGGAGGCTACATTTCCGATGCGCTTACTTTCCCCGATGCTTCAACGTCGTTGTATCCTCAGCCGAGCTCTAACTTCGTCGCTGAAAGTATTGAATCATCCGAGCCGATGAATGTGTATGAACAAACGGCGTTTGTTTTTCATGCTTCGACGTCGTTTCCTCACTTGCCGGACCTGCGTTCTTTGGGGCAATGTTCGTCGTCGTTTAACAAGCGTGCTCGAGTCGATTCTGTGTGGAATCCGTTGCAGATGGTGGAGCCGATGATGCGAGAGTGTGAGGTAAGTAGCTCCGCTGCTGTGTCTCGTACTGTTCAAATTCCTCGCAGCGCATTAGCTCGACAGCGTCGGCAGAAATTGAGCGACAAGACGCGTTGCTTGCAGAAGCTACTGCCGTGGGACAAGAAGATGGATATCTCTACAATGCTTGAAGGAGCGTTTAAGTACGTCAAGTTCCTTCAGGCGCAACTCCTTGCTCTTCAATCCATGCCTTGCGAGTCGGCCATTTCTACTAATTCGAATCATCACATAAGCGGCGTGTTTGGTGGATTGGAGAGGCTGAGCAGAAACCAACTATTGCAAGTTTTGGTTAACTCGCCGGTCGCTCAGACGATGCTTTGTTCGCAGAGTTGTTGCGTTTTCTCGGCAGAACAGTTGGGGCTTATCCAGAAGATCGCAGAGAAAAGAGTTCTTCTGCAGCAGATCTCAACGTTCCGACATAAGCCCTAG

Protein sequence

METSAGDDASSTVWDDACFDAMFSGVSLQSFLAGGSQSHTLLPSLFGGCYVADSLTFPDGMTSLYPQVSSNFVAESTASSDGPFFKLPKSEPMSVYEQTETQESTFLFHDSTSFPHLPDLRLMMVESSAGDDGSTNVWDDACFNAMFSGVSLQSFLAGGNQNHCPLLLPSLFGGGYISDALTFPDASTSLYPQPSSNFVAESIESSEPMNVYEQTAFVFHASTSFPHLPDLRSLGQCSSSFNKRARVDSVWNPLQMVEPMMRECEVSSSAAVSRTVQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDISTMLEGAFKYVKFLQAQLLALQSMPCESAISTNSNHHISGVFGGLERLSRNQLLQVLVNSPVAQTMLCSQSCCVFSAEQLGLIQKIAEKRVLLQQISTFRHKP

Homology

[Close]

BLAST of CmoCh11G019200 vs. ExPASy Swiss-Prot
Match: Q9LRJ4 (Transcription factor bHLH117 OS=Arabidopsis thaliana OX=3702 GN=BHLH117 PE=2 SV=2)

HSP 1 Score: 100.1 bits (248), Expect = 6.0e-20
Identity = 77/224 (34.38%), Postives = 117/224 (52.23%), Query Frame = 0


Query: 178 SDALTFPDASTSLYPQPSSNFVAESIESSEPMNV----YEQT-AFVFH------ASTSFP 237
           S+A TFPD +       S+  +      SE   +    Y+ T   +FH       +T F 
Sbjct: 25  SNAFTFPDHNLDFSFLDSTLSLLNRHHLSESTRLEQIFYDSTHTQLFHNDDTTTTTTPFL 84

Query: 238 HLPDLRSLGQCSSSFNKRARVDSVWNPLQMVEPMMRECEVSSSAAVSRTVQIPRSALARQ 297
           HLPDL+S+         +    S+  PL   +        SS+ + S T       +   
Sbjct: 85  HLPDLKSIDAVEEPTTMKL-FPSLSPPLPAAKRQKLNSTSSSTTSGSPTASNDGGIIT-- 144

Query: 298 RRQKLSDKTRCLQKLLPWDKKMDISTMLEGAFKYVKFLQAQLLALQSMPCESAISTNSNH 357
           +R+K+SDK R L+KL+PW++KM+++  LE + KY+KFLQ+Q+ +L+ MP ES  +T    
Sbjct: 145 KRRKISDKIRSLEKLMPWERKMNLAMTLEESHKYIKFLQSQIASLRWMPLESVYNTAGE- 204

Query: 358 HISGVFGGLERLSRNQLLQVLVNSPVAQTMLCSQSCCVFSAEQL 391
              G    L+ L+R Q+LQVL NSP ++ +L S+  CVFS EQL
Sbjct: 205 --VGETDLLKSLTRQQILQVLANSPGSRNVLSSRGVCVFSYEQL 242

[Close]

BLAST of CmoCh11G019200 vs. ExPASy Swiss-Prot
Match: Q8S3D2 (Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 9.0e-08
Identity = 37/107 (34.58%), Postives = 62/107 (57.94%), Query Frame = 0


Query: 229 PDLRSLGQCSSSFNKRARVDSVWNPLQMVE-PMMRECEVSSSAAVSRTVQIPRSALARQR 288
           PD  ++ Q      + A    V   L++VE P  +  ++S+          P++  ARQR
Sbjct: 237 PDAEAIAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTD---------PQTVAARQR 296

Query: 289 RQKLSDKTRCLQKLLPWDKKMDISTMLEGAFKYVKFLQAQLLALQSM 335
           R+++S+K R LQ L+P   KMD ++ML+ A  Y+KFL+AQ+ AL+++
Sbjct: 297 RERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALENL 334

[Close]

BLAST of CmoCh11G019200 vs. ExPASy Swiss-Prot
Match: Q3E7L7 (Transcription factor bHLH139 OS=Arabidopsis thaliana OX=3702 GN=BHLH139 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.0e-06
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 279 PRSALARQRRQKLSDKTRCLQKLLPWDKKMDISTMLEGAFKYVKFLQAQLLALQS 334
           P+S  AR+RR++++D+ + LQ L+P   K+DISTMLE A  YVKFLQ Q+  L S
Sbjct: 142 PQSLYARKRRERINDRLKTLQSLVPNGTKVDISTMLEDAVHYVKFLQLQIKLLSS 196

[Close]

BLAST of CmoCh11G019200 vs. ExPASy Swiss-Prot
Match: Q9LXD8 (Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.0e-06
Identity = 36/104 (34.62%), Postives = 56/104 (53.85%), Query Frame = 0


Query: 231 LRSLGQCSSSFNKRARVDSV-WNPLQMVEPMMRECEVSSSAAVSRTVQIPRSALARQRRQ 290
           L  LG       K A + SV  +P  + +P  R   +S           P+S  AR RR+
Sbjct: 89  LEELGAMKEMMYKIAAMQSVDIDPATVKKPKRRNVRISDD---------PQSVAARHRRE 148

Query: 291 KLSDKTRCLQKLLPWDKKMDISTMLEGAFKYVKFLQAQLLALQS 334
           ++S++ R LQ+L+P   KMD ++ML+ A +YVKFL+ Q+  L +
Sbjct: 149 RISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLNN 183

[Close]

BLAST of CmoCh11G019200 vs. ExPASy Swiss-Prot
Match: Q7XHI9 (Transcription factor bHLH84 OS=Arabidopsis thaliana OX=3702 GN=BHLH84 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-06
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 279 PRSALARQRRQKLSDKTRCLQKLLPWDKKMDISTMLEGAFKYVKFLQAQLLALQS 334
           P+S  AR+RR++++++ R LQ L+P   K+DISTMLE A +YVKFLQ Q+  L S
Sbjct: 247 PQSLYARKRRERINERLRILQHLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSS 301

[Close]

BLAST of CmoCh11G019200 vs. ExPASy TrEMBL
Match: A0A6J1EXY4 (transcription factor bHLH117-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437213 PE=4 SV=1)

HSP 1 Score: 574.3 bits (1479), Expect = 4.0e-160
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 0


Query: 123 MMVESSAGDDGSTNVWDDACFNAMFSGVSLQSFLAGGNQNHCPLLLPSLFGGGYISDALT 182
           MMVESSAGDDGSTNVWDDACFNAMFSGVSLQSFLAGGNQNHCPLLLPSLFGGGYISDALT
Sbjct: 1   MMVESSAGDDGSTNVWDDACFNAMFSGVSLQSFLAGGNQNHCPLLLPSLFGGGYISDALT 60

Query: 183 FPDASTSLYPQPSSNFVAESIESSEPMNVYEQTAFVFHASTSFPHLPDLRSLGQCSSSFN 242
           FPDASTSLYPQPSSNFVAESIESSEPMNVYEQTAFVFHASTSFPHLPDLRSLGQCSSSFN
Sbjct: 61  FPDASTSLYPQPSSNFVAESIESSEPMNVYEQTAFVFHASTSFPHLPDLRSLGQCSSSFN 120

Query: 243 KRARVDSVWNPLQMVEPMMRECEVSSSAAVSRTVQIPRSALARQRRQKLSDKTRCLQKLL 302
           KRARVDSVWNPLQMVEPMMRECEVSSSAAVSRTVQIPRSALARQRRQKLSDKTRCLQKLL
Sbjct: 121 KRARVDSVWNPLQMVEPMMRECEVSSSAAVSRTVQIPRSALARQRRQKLSDKTRCLQKLL 180

Query: 303 PWDKKMDISTMLEGAFKYVKFLQAQLLALQSMPCESAISTNSNHHISGVFGGLERLSRNQ 362
           PWDKKMDISTMLEGAFKYVKFLQAQLLALQSMPCESAISTNSNHHISGVFGGLERLSRNQ
Sbjct: 181 PWDKKMDISTMLEGAFKYVKFLQAQLLALQSMPCESAISTNSNHHISGVFGGLERLSRNQ 240

Query: 363 LLQVLVNSPVAQTMLCSQSCCVFSAEQLGLIQKIAEKRVLLQQISTFRHKP 414
           LLQVLVNSPVAQTMLCSQSCCVFSAEQLGLIQKIAEKRVLLQQISTFRHKP
Sbjct: 241 LLQVLVNSPVAQTMLCSQSCCVFSAEQLGLIQKIAEKRVLLQQISTFRHKP 291

[Close]

BLAST of CmoCh11G019200 vs. ExPASy TrEMBL
Match: A0A6J1ES24 (transcription factor bHLH117-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437213 PE=4 SV=1)

HSP 1 Score: 498.8 bits (1283), Expect = 2.2e-137
Identity = 257/291 (88.32%), Postives = 257/291 (88.32%), Query Frame = 0


Query: 123 MMVESSAGDDGSTNVWDDACFNAMFSGVSLQSFLAGGNQNHCPLLLPSLFGGGYISDALT 182
           MMVESSAGDDGSTNVWDDACFNAMFSGVSLQSFLAGGNQNHCPLLLPSLFGGGYISDALT
Sbjct: 1   MMVESSAGDDGSTNVWDDACFNAMFSGVSLQSFLAGGNQNHCPLLLPSLFGGGYISDALT 60

Query: 183 FPDASTSLYPQPSSNFVAESIESSEPMNVYEQTAFVFHASTSFPHLPDLRSLGQCSSSFN 242
           FPDASTSLYPQPSSNFVAESIESSEPMNVYEQTAFVFHASTSFPHLPDLRSLGQCSSSFN
Sbjct: 61  FPDASTSLYPQPSSNFVAESIESSEPMNVYEQTAFVFHASTSFPHLPDLRSLGQCSSSFN 120

Query: 243 KRARVDSVWNPLQMVEPMMRECEVSSSAAVSRTVQIPRSALARQRRQKLSDKTRCLQKLL 302
           KRARVDSVWNPLQMVEPMMRECE                                  KLL
Sbjct: 121 KRARVDSVWNPLQMVEPMMRECE----------------------------------KLL 180

Query: 303 PWDKKMDISTMLEGAFKYVKFLQAQLLALQSMPCESAISTNSNHHISGVFGGLERLSRNQ 362
           PWDKKMDISTMLEGAFKYVKFLQAQLLALQSMPCESAISTNSNHHISGVFGGLERLSRNQ
Sbjct: 181 PWDKKMDISTMLEGAFKYVKFLQAQLLALQSMPCESAISTNSNHHISGVFGGLERLSRNQ 240

Query: 363 LLQVLVNSPVAQTMLCSQSCCVFSAEQLGLIQKIAEKRVLLQQISTFRHKP 414
           LLQVLVNSPVAQTMLCSQSCCVFSAEQLGLIQKIAEKRVLLQQISTFRHKP
Sbjct: 241 LLQVLVNSPVAQTMLCSQSCCVFSAEQLGLIQKIAEKRVLLQQISTFRHKP 257

[Close]

BLAST of CmoCh11G019200 vs. ExPASy TrEMBL
Match: A0A5A7TAD0 (Transcription factor bHLH117 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003960 PE=4 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 5.0e-110
Identity = 229/324 (70.68%), Postives = 249/324 (76.85%), Query Frame = 0


Query: 125 VESSAGDDGSTNVWDDACFNAMFSGVSLQSFLAGGNQNHCPLLLPSLFGGGYISDALTFP 184
           +ESS GDD S++VWDDACFNAMFS VS QSFLA GN         S FGGGYI+DALTFP
Sbjct: 1   MESSPGDDASSSVWDDACFNAMFSDVSFQSFLAAGNH--------SQFGGGYIADALTFP 60

Query: 185 DASTSLYPQPSSNFVAESIES----------SEPMNVYEQT-----AFVFHASTSFPHLP 244
           DA+TS YPQPS+NF AE  +S          SEPM+VYE T     AFV H STSFPHLP
Sbjct: 61  DATTSFYPQPSTNFAAECTDSSDGPFFKLPKSEPMDVYEDTETKEPAFVLHDSTSFPHLP 120

Query: 245 DLRSLGQCSSSFNKRARVDSVWNPLQMVEPMMRECE------------------VSSSAA 304
           DLRSL QCSSSFNKRARVDS+ NPLQMVEPM+R CE                  +++SA 
Sbjct: 121 DLRSLEQCSSSFNKRARVDSMSNPLQMVEPMVRGCEGFQNFFVPYGQYKTSSDLITTSAT 180

Query: 305 VSRTVQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDISTMLEGAFKYVKFLQAQLLAL 364
            S TVQIPRS  ARQRRQKLSDKTRCLQKLLPWDKKMDI+TMLE A KYVKFLQAQLLAL
Sbjct: 181 ASPTVQIPRSTFARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLAL 240

Query: 365 QSMPCESAIST--NSNHHISGVFGGLERLSRNQLLQVLVNSPVAQTMLCSQSCCVFSAEQ 414
           QSMPCESA+S+  +SN +I+GVFGGLERL+RNQLLQVLVNSPVAQTMLCSQSCCVFSAEQ
Sbjct: 241 QSMPCESALSSYNSSNPYITGVFGGLERLNRNQLLQVLVNSPVAQTMLCSQSCCVFSAEQ 300

[Close]

BLAST of CmoCh11G019200 vs. ExPASy TrEMBL
Match: A0A1S3C0Y6 (transcription factor bHLH117 OS=Cucumis melo OX=3656 GN=LOC103495566 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 1.2e-108
Identity = 228/324 (70.37%), Postives = 248/324 (76.54%), Query Frame = 0


Query: 125 VESSAGDDGSTNVWDDACFNAMFSGVSLQSFLAGGNQNHCPLLLPSLFGGGYISDALTFP 184
           +ESS GDD S++VWDDACFNAMFS VS QSFLA GN         S FGGGYI+DALTFP
Sbjct: 1   MESSPGDDASSSVWDDACFNAMFSDVSFQSFLAAGNH--------SQFGGGYIADALTFP 60

Query: 185 DASTSLYPQPSSNFVAESIES----------SEPMNVYEQT-----AFVFHASTSFPHLP 244
           DA+TS YPQPS+NF AE  +S          SEPM+VYE T     AFV H STSFPHLP
Sbjct: 61  DATTSFYPQPSTNFAAECTDSSDGPFFKLPKSEPMDVYEDTETKEPAFVLHDSTSFPHLP 120

Query: 245 DLRSLGQCSSSFNKRARVDSVWNPLQMVEPMMRECE------------------VSSSAA 304
           DLRSL Q SSSFNKRARVDS+ NPLQMVEPM+R CE                  +++SA 
Sbjct: 121 DLRSLEQRSSSFNKRARVDSMSNPLQMVEPMVRGCEGFQNFFVPYGQYKTSSDLITTSAT 180

Query: 305 VSRTVQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDISTMLEGAFKYVKFLQAQLLAL 364
            S TVQIPRS  ARQRRQKLSDKTRCLQKLLPWDKKMDI+TMLE A KYVKFLQAQLLAL
Sbjct: 181 ASPTVQIPRSTFARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLAL 240

Query: 365 QSMPCESAIST--NSNHHISGVFGGLERLSRNQLLQVLVNSPVAQTMLCSQSCCVFSAEQ 414
           QSMPCESA+S+  +SN +I+GVFGGLERL+RNQLLQVLVNSPVAQTMLCSQSCCVFSAEQ
Sbjct: 241 QSMPCESALSSYNSSNPYITGVFGGLERLNRNQLLQVLVNSPVAQTMLCSQSCCVFSAEQ 300

[Close]

BLAST of CmoCh11G019200 vs. ExPASy TrEMBL
Match: A0A0A0K6W7 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044910 PE=4 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 2.0e-106
Identity = 224/324 (69.14%), Postives = 248/324 (76.54%), Query Frame = 0


Query: 125 VESSAGDDGSTNVW-DDACFNAMFSGVSLQSFLAGGNQNHCPLLLPSLFGGGYISDALTF 184
           +E+S GDD S++VW DDACFNAMFS VS QSFLA GN         S FGGGYI+DALTF
Sbjct: 1   METSPGDDASSSVWDDDACFNAMFSDVSFQSFLAAGNH--------SQFGGGYIADALTF 60

Query: 185 PDASTSLYPQPSSNFVAESIES----------SEPMNVYEQT-----AFVFHASTSFPHL 244
           P+ +TS YPQP++NF AE  +S          SEPM+VYE T     AFV H STSFPHL
Sbjct: 61  PNPTTSFYPQPTTNFAAECTDSSDGPFFKLPKSEPMDVYEDTETKEPAFVLHDSTSFPHL 120

Query: 245 PDLRSLGQCSSSFNKRARVDSVWNPLQMVEPMMRECE-----------------VSSSAA 304
           PDLRSL QCSSS NKRARVDS+ NPLQM+EPM+R CE                 +++SA 
Sbjct: 121 PDLRSLEQCSSSLNKRARVDSMSNPLQMMEPMVRGCEGFQSFFVPYQYKISSDLITASAT 180

Query: 305 VSRTVQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDISTMLEGAFKYVKFLQAQLLAL 364
            S TVQIPRS  ARQRRQKLSDKTRCLQKLLPWDKKMDI+TMLE A KYVKFLQAQLLAL
Sbjct: 181 ASPTVQIPRSTFARQRRQKLSDKTRCLQKLLPWDKKMDIATMLEEACKYVKFLQAQLLAL 240

Query: 365 QSMPCESAIST--NSNHHISGVFGGLERLSRNQLLQVLVNSPVAQTMLCSQSCCVFSAEQ 414
           QSMPCESAIS+  +SN++I+GVFGGLERL+RNQLLQVLVNSPVAQTMLCSQSCCVFSAEQ
Sbjct: 241 QSMPCESAISSYNSSNNYITGVFGGLERLNRNQLLQVLVNSPVAQTMLCSQSCCVFSAEQ 300

[Close]

BLAST of CmoCh11G019200 vs. TAIR 10
Match: AT3G22100.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 100.1 bits (248), Expect = 4.3e-21
Identity = 77/224 (34.38%), Postives = 117/224 (52.23%), Query Frame = 0


Query: 178 SDALTFPDASTSLYPQPSSNFVAESIESSEPMNV----YEQT-AFVFH------ASTSFP 237
           S+A TFPD +       S+  +      SE   +    Y+ T   +FH       +T F 
Sbjct: 25  SNAFTFPDHNLDFSFLDSTLSLLNRHHLSESTRLEQIFYDSTHTQLFHNDDTTTTTTPFL 84

Query: 238 HLPDLRSLGQCSSSFNKRARVDSVWNPLQMVEPMMRECEVSSSAAVSRTVQIPRSALARQ 297
           HLPDL+S+         +    S+  PL   +        SS+ + S T       +   
Sbjct: 85  HLPDLKSIDAVEEPTTMKL-FPSLSPPLPAAKRQKLNSTSSSTTSGSPTASNDGGIIT-- 144

Query: 298 RRQKLSDKTRCLQKLLPWDKKMDISTMLEGAFKYVKFLQAQLLALQSMPCESAISTNSNH 357
           +R+K+SDK R L+KL+PW++KM+++  LE + KY+KFLQ+Q+ +L+ MP ES  +T    
Sbjct: 145 KRRKISDKIRSLEKLMPWERKMNLAMTLEESHKYIKFLQSQIASLRWMPLESVYNTAGE- 204

Query: 358 HISGVFGGLERLSRNQLLQVLVNSPVAQTMLCSQSCCVFSAEQL 391
              G    L+ L+R Q+LQVL NSP ++ +L S+  CVFS EQL
Sbjct: 205 --VGETDLLKSLTRQQILQVLANSPGSRNVLSSRGVCVFSYEQL 242

[Close]

BLAST of CmoCh11G019200 vs. TAIR 10
Match: AT3G21330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 59.7 bits (143), Expect = 6.4e-09
Identity = 37/107 (34.58%), Postives = 62/107 (57.94%), Query Frame = 0


Query: 229 PDLRSLGQCSSSFNKRARVDSVWNPLQMVE-PMMRECEVSSSAAVSRTVQIPRSALARQR 288
           PD  ++ Q      + A    V   L++VE P  +  ++S+          P++  ARQR
Sbjct: 237 PDAEAIAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTD---------PQTVAARQR 296

Query: 289 RQKLSDKTRCLQKLLPWDKKMDISTMLEGAFKYVKFLQAQLLALQSM 335
           R+++S+K R LQ L+P   KMD ++ML+ A  Y+KFL+AQ+ AL+++
Sbjct: 297 RERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALENL 334

[Close]

BLAST of CmoCh11G019200 vs. TAIR 10
Match: AT5G43175.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 7.1e-08
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 279 PRSALARQRRQKLSDKTRCLQKLLPWDKKMDISTMLEGAFKYVKFLQAQLLALQS 334
           P+S  AR+RR++++D+ + LQ L+P   K+DISTMLE A  YVKFLQ Q+  L S
Sbjct: 142 PQSLYARKRRERINDRLKTLQSLVPNGTKVDISTMLEDAVHYVKFLQLQIKLLSS 196

[Close]

BLAST of CmoCh11G019200 vs. TAIR 10
Match: AT5G09750.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 7.1e-08
Identity = 36/104 (34.62%), Postives = 56/104 (53.85%), Query Frame = 0


Query: 231 LRSLGQCSSSFNKRARVDSV-WNPLQMVEPMMRECEVSSSAAVSRTVQIPRSALARQRRQ 290
           L  LG       K A + SV  +P  + +P  R   +S           P+S  AR RR+
Sbjct: 89  LEELGAMKEMMYKIAAMQSVDIDPATVKKPKRRNVRISDD---------PQSVAARHRRE 148

Query: 291 KLSDKTRCLQKLLPWDKKMDISTMLEGAFKYVKFLQAQLLALQS 334
           ++S++ R LQ+L+P   KMD ++ML+ A +YVKFL+ Q+  L +
Sbjct: 149 RISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLNN 183

[Close]

BLAST of CmoCh11G019200 vs. TAIR 10
Match: AT1G27740.1 (root hair defective 6-like 4 )

HSP 1 Score: 55.8 bits (133), Expect = 9.3e-08
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 271 AVSRTVQIPRSALARQRRQKLSDKTRCLQKLLPWDKKMDISTMLEGAFKYVKFLQAQLLA 330
           A   T   P+S  AR+RR+K++++ + LQ L+P   K+DISTMLE A  YVKFLQ Q+  
Sbjct: 169 ATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKL 228

Query: 331 LQS 334
           L S
Sbjct: 229 LSS 231

The following BLAST results are available for this feature:

BLAST of CmoCh11G019200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LRJ4	6.0e-20	34.38	Transcription factor bHLH117 OS=Arabidopsis thaliana OX=3702 GN=BHLH117 PE=2 SV=...	[more]
Q8S3D2	9.0e-08	34.58	Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1	[more]
Q3E7L7	1.0e-06	52.73	Transcription factor bHLH139 OS=Arabidopsis thaliana OX=3702 GN=BHLH139 PE=3 SV=...	[more]
Q9LXD8	1.0e-06	34.62	Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1	[more]
Q7XHI9	1.3e-06	52.73	Transcription factor bHLH84 OS=Arabidopsis thaliana OX=3702 GN=BHLH84 PE=1 SV=1	[more]

BLAST of CmoCh11G019200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EXY4	4.0e-160	100.00	transcription factor bHLH117-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1ES24	2.2e-137	88.32	transcription factor bHLH117-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A5A7TAD0	5.0e-110	70.68	Transcription factor bHLH117 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C0Y6	1.2e-108	70.37	transcription factor bHLH117 OS=Cucumis melo OX=3656 GN=LOC103495566 PE=4 SV=1	[more]
A0A0A0K6W7	2.0e-106	69.14	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044910 PE=4 S...	[more]

BLAST of CmoCh11G019200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22100.1	4.3e-21	34.38	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G21330.1	6.4e-09	34.58	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G43175.1	7.1e-08	52.73	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G09750.1	7.1e-08	34.62	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G27740.1	9.3e-08	49.21	root hair defective 6-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 281..330 e-value: 3.9E-7 score: 39.7
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 275..324 score: 12.137765
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 277..344 e-value: 2.8E-7 score: 32.6
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 278..333
None	No IPR available	PANTHER	PTHR45914	TRANSCRIPTION FACTOR HEC3-RELATED	coord: 186..410
None	No IPR available	PANTHER	PTHR45914:SF24	TRANSCRIPTION FACTOR BHLH117	coord: 186..410

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G019200.1	CmoCh11G019200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity