CmoCh11G019080 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G019080
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionMelanoma inhibitory activity protein 3, putative
LocationCmo_Chr11: 13255847 .. 13256702 (+)
RNA-Seq ExpressionCmoCh11G019080
SyntenyCmoCh11G019080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTCACGCTCTCAACATTCTTTGAATGGACAAGAAGAACGCCGCTGCAGCCGGTGTTGATCCGCCGCCGGAGAAATCCTCCTCCGCCGCCACAGGAGCTGAAGAACCGTCGGAGAGTGGGTGGACGGAGTATCTAGAGGATTATTTGTGGTCGGAAATTGAGAGAAAAAGCAGTTTTTTGTGTTGTTCAAGTAGTGGGAGCTGTAGTTGGGACATTTCAGAAGCCAATAAGGAAAAAATCAATGGTTTAAGCCCATTTTGTAGCGTTGGGGAGGTGATTTTGGATGCCCCAAACAAGCTAAGCTTCAAAAAAACAACAACTCAGAGGATTTTTGACGATGATTCCTTAGAAGATACGGCCACTTCTCCTGTTCTAACTCCAAAAGTACCCTTTAATTCTCTCTTTTTCCTCTCATTTTTGCTTTATTTTTCAATTATTTCATTGAATTTTTCTGTTTTAGGTTGCTGATTTGAACGTATGAACAACCCATCTAAATCCTAGGATCGATGAACATGTCGTGATCCGTAACTCCACGGTAATTATAATTATGGGTCAAATAATTTACCTTGTTAGACCCTTTAGATGTAAAAAAAGTAAGATTAAAATTATGGGTTTTGTTCCTTTTTTGTGTTTTTTTTAACCCAATTGAGGATTTTTGTAGGGCAGCAATGGCCATCGGGGAATTATGATTCAAACCCAGAAAAAGCTGCAGAGAAGCAAAGGAAAAAAGGGCTGTGTTTGAGTCCAATTTACATGTAATTTTAGCTCTCAAACTCGCTATTATAATCTATAATTCTCTCGTTTCGTTCGTTGTTTTGGATTATTCGAGTAATCAAGTTTTTTTCTTTCACCCAG

mRNA sequence

ATCTCACGCTCTCAACATTCTTTGAATGGACAAGAAGAACGCCGCTGCAGCCGGTGTTGATCCGCCGCCGGAGAAATCCTCCTCCGCCGCCACAGGAGCTGAAGAACCGTCGGAGAGTGGGTGGACGGAGTATCTAGAGGATTATTTGTGGTCGGAAATTGAGAGAAAAAGCAGTTTTTTGTGTTGTTCAAGTAGTGGGAGCTGTAGTTGGGACATTTCAGAAGCCAATAAGGAAAAAATCAATGGTTTAAGCCCATTTTGTAGCGTTGGGGAGGTGATTTTGGATGCCCCAAACAAGCTAAGCTTCAAAAAAACAACAACTCAGAGGATTTTTGACGATGATTCCTTAGAAGATACGGCCACTTCTCCTGTTCTAACTCCAAAAGTTGCTGATTTGAACGTATGAACAACCCATCTAAATCCTAGGATCGATGAACATGTCGTGATCCGTAACTCCACGGGCAGCAATGGCCATCGGGGAATTATGATTCAAACCCAGAAAAAGCTGCAGAGAAGCAAAGGAAAAAAGGGCTGTGTTTGAGTCCAATTTACATGTAATTTTAGCTCTCAAACTCGCTATTATAATCTATAATTCTCTCGTTTCGTTCGTTGTTTTGGATTATTCGAGTAATCAAGTTTTTTTCTTTCACCCAG

Coding sequence (CDS)

ATGGACAAGAAGAACGCCGCTGCAGCCGGTGTTGATCCGCCGCCGGAGAAATCCTCCTCCGCCGCCACAGGAGCTGAAGAACCGTCGGAGAGTGGGTGGACGGAGTATCTAGAGGATTATTTGTGGTCGGAAATTGAGAGAAAAAGCAGTTTTTTGTGTTGTTCAAGTAGTGGGAGCTGTAGTTGGGACATTTCAGAAGCCAATAAGGAAAAAATCAATGGTTTAAGCCCATTTTGTAGCGTTGGGGAGGTGATTTTGGATGCCCCAAACAAGCTAAGCTTCAAAAAAACAACAACTCAGAGGATTTTTGACGATGATTCCTTAGAAGATACGGCCACTTCTCCTGTTCTAACTCCAAAAGTTGCTGATTTGAACGTATGA

Protein sequence

MDKKNAAAAGVDPPPEKSSSAATGAEEPSESGWTEYLEDYLWSEIERKSSFLCCSSSGSCSWDISEANKEKINGLSPFCSVGEVILDAPNKLSFKKTTTQRIFDDDSLEDTATSPVLTPKVADLNV
Homology
BLAST of CmoCh11G019080 vs. ExPASy Swiss-Prot
Match: Q9LSZ3 (Vascular-related unknown protein 1 OS=Arabidopsis thaliana OX=3702 GN=VUP1 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.6e-06
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 0

Query: 24  GAEEPSESGWTEYLEDYL---------WSEIERKSSFLCCSSSGSCSWDISEANKEKING 83
           G +   ESGWT YL+D+           ++ + KSS+   ++S S    +S+A     +G
Sbjct: 31  GGDHQEESGWTTYLDDFSNQYRTTHHEENDHQDKSSYSLLATSTSL---VSDAATHAFSG 90

Query: 84  LSPFCSVGEVILDAPNKLSFKKTTTQRIFDDDSLEDTATSPVLTPKVA 123
            S         ++ P KL F +  T++I +DDSLEDTA+SPV +PKV+
Sbjct: 91  KS-------FPVNFPAKLKFGRGRTKKICEDDSLEDTASSPVNSPKVS 128

BLAST of CmoCh11G019080 vs. ExPASy TrEMBL
Match: A0A6J1ESI7 (Uncharacterized protein OS=Cucurbita moschata OX=3662 GN=LOC111437171 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.1e-63
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0

Query: 1   MDKKNAAAAGVDPPPEKSSSAATGAEEPSESGWTEYLEDYLWSEIERKSSFLCCSSSGSC 60
           MDKKNAAAAGVDPPPEKSSSAATGAEEPSESGWTEYLEDYLWSEIERKSSFLCCSSSGSC
Sbjct: 1   MDKKNAAAAGVDPPPEKSSSAATGAEEPSESGWTEYLEDYLWSEIERKSSFLCCSSSGSC 60

Query: 61  SWDISEANKEKINGLSPFCSVGEVILDAPNKLSFKKTTTQRIFDDDSLEDTATSPVLTPK 120
           SWDISEANKEKINGLSPFCSVGEVILDAPNKLSFKKTTTQRIFDDDSLEDTATSPVLTPK
Sbjct: 61  SWDISEANKEKINGLSPFCSVGEVILDAPNKLSFKKTTTQRIFDDDSLEDTATSPVLTPK 120

Query: 121 VADLNV 127
           VADLNV
Sbjct: 121 VADLNV 126

BLAST of CmoCh11G019080 vs. ExPASy TrEMBL
Match: A0A6J1JN61 (Uncharacterized protein OS=Cucurbita maxima OX=3661 GN=LOC111486202 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.8e-56
Identity = 116/126 (92.06%), Postives = 117/126 (92.86%), Query Frame = 0

Query: 1   MDKKNAAAAGVDPPPEKSSSAATGAEEPSESGWTEYLEDYLWSEIERKSSFLCCSSSGSC 60
           MDKKN   AGVDPPPEKSSSAATGAEE  ESGWTEYLEDYLWSEIERKSSFLCCSSSGSC
Sbjct: 1   MDKKN---AGVDPPPEKSSSAATGAEEAEESGWTEYLEDYLWSEIERKSSFLCCSSSGSC 60

Query: 61  SWDISEANKEKINGLSPFCSVGEVILDAPNKLSFKKTTTQRIFDDDSLEDTATSPVLTPK 120
           SWDISEANKEKIN L+PFCSVGEVILDAPNKLS KKTTTQ IFDDDSLEDTATSPVLTPK
Sbjct: 61  SWDISEANKEKINALTPFCSVGEVILDAPNKLSLKKTTTQTIFDDDSLEDTATSPVLTPK 120

Query: 121 VADLNV 127
           VAD NV
Sbjct: 121 VADFNV 123

BLAST of CmoCh11G019080 vs. ExPASy TrEMBL
Match: A0A6J1C2S1 (uncharacterized protein LOC111007924 OS=Momordica charantia OX=3673 GN=LOC111007924 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.1e-20
Identity = 73/128 (57.03%), Postives = 86/128 (67.19%), Query Frame = 0

Query: 3   KKNAAAAGVDPPPEKSSSAATGAEEPSESGWTEYLEDYL-WSEIERKSSFLCCSSSGSCS 62
           +KN  A  ++ P   ++++  G  E  ESGWT+YLEDY   S+IER+ SFL CSS GSCS
Sbjct: 2   EKNKDAPPLEEPSAAAANSGGGGGEEEESGWTDYLEDYFSSSDIEREKSFL-CSSIGSCS 61

Query: 63  WDISEANKEKINGLSP-FCSVGEVILDAPNKL-SFKK-TTTQRIFDDDSLEDTATSPVLT 122
            D         N LSP  CSVGEV LD+P KL  FKK T TQ+IF DDSLEDTATSPV +
Sbjct: 62  DD----GNTTTNVLSPTLCSVGEVFLDSPKKLICFKKLTRTQKIFQDDSLEDTATSPVHS 121

Query: 123 PKVADLNV 127
           PKVADL V
Sbjct: 122 PKVADLKV 124

BLAST of CmoCh11G019080 vs. ExPASy TrEMBL
Match: A0A1S3C0F7 (uncharacterized protein LOC103495585 OS=Cucumis melo OX=3656 GN=LOC103495585 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 6.2e-19
Identity = 71/131 (54.20%), Postives = 84/131 (64.12%), Query Frame = 0

Query: 2   DKKNAAAAGVDPPPEKSSSAATGAEEPSESGWTEYLEDYLWSE-IERKSSFLCCSSSGSC 61
           +  NA     D PPE SS+A  GAEE  ESGWT+YLEDY  SE +ER+SSFL CSS GSC
Sbjct: 7   NNNNATPQAPDSPPENSSAA--GAEEQEESGWTDYLEDYFNSELVERESSFL-CSSIGSC 66

Query: 62  S-WDISEANKEKINGLSPFCSVGEVILD---APNKLSFKKTTTQRIF-DDDSLEDTATSP 121
           S WD           ++   +VG V  D     N L+FKKT TQ+IF DDDSL+DTATSP
Sbjct: 67  SNWDDLNNISYPNYDINYNINVGNVNYDDFPKSNNLTFKKTRTQKIFEDDDSLQDTATSP 126

Query: 122 VLTPKVADLNV 127
           + +PKV DL V
Sbjct: 127 IHSPKVVDLKV 134

BLAST of CmoCh11G019080 vs. ExPASy TrEMBL
Match: A0A0A0K3L1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044250 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 6.4e-16
Identity = 65/121 (53.72%), Postives = 77/121 (63.64%), Query Frame = 0

Query: 12  DPPPEKSSSAATGAEEPSESGWTEYLEDYLWSE-IERKSSFLCCSSSGSCS-WDISEANK 71
           D  PE SS  A   EE  ESGWT+YLEDY  SE +ER+SSFL CSS GSCS WD      
Sbjct: 13  DSLPENSS--AVRDEEQEESGWTDYLEDYFNSEFVERESSFL-CSSIGSCSNWDDRNNIS 72

Query: 72  EKINGLSPFCSVGEVILD---APNKLSFKKTTTQRIF-DDDSLEDTATSPVLTPKVADLN 127
                ++   ++G V  D     N L+FKKT TQ+IF DDDSL+DTATSP+ +PKV DL 
Sbjct: 73  YPSYDINYNINIGNVNYDDFPKSNNLTFKKTRTQKIFEDDDSLQDTATSPIHSPKVVDLK 130

BLAST of CmoCh11G019080 vs. TAIR 10
Match: AT3G21710.1 (unknown protein; Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-07
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 0

Query: 24  GAEEPSESGWTEYLEDYL---------WSEIERKSSFLCCSSSGSCSWDISEANKEKING 83
           G +   ESGWT YL+D+           ++ + KSS+   ++S S    +S+A     +G
Sbjct: 31  GGDHQEESGWTTYLDDFSNQYRTTHHEENDHQDKSSYSLLATSTSL---VSDAATHAFSG 90

Query: 84  LSPFCSVGEVILDAPNKLSFKKTTTQRIFDDDSLEDTATSPVLTPKVA 123
            S         ++ P KL F +  T++I +DDSLEDTA+SPV +PKV+
Sbjct: 91  KS-------FPVNFPAKLKFGRGRTKKICEDDSLEDTASSPVNSPKVS 128

BLAST of CmoCh11G019080 vs. TAIR 10
Match: AT3G21710.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-07
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 0

Query: 24  GAEEPSESGWTEYLEDYL---------WSEIERKSSFLCCSSSGSCSWDISEANKEKING 83
           G +   ESGWT YL+D+           ++ + KSS+   ++S S    +S+A     +G
Sbjct: 31  GGDHQEESGWTTYLDDFSNQYRTTHHEENDHQDKSSYSLLATSTSL---VSDAATHAFSG 90

Query: 84  LSPFCSVGEVILDAPNKLSFKKTTTQRIFDDDSLEDTATSPVLTPKVA 123
            S         ++ P KL F +  T++I +DDSLEDTA+SPV +PKV+
Sbjct: 91  KS-------FPVNFPAKLKFGRGRTKKICEDDSLEDTASSPVNSPKVS 128

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9LSZ32.6e-0635.19Vascular-related unknown protein 1 OS=Arabidopsis thaliana OX=3702 GN=VUP1 PE=2 ... [more]
Match NameE-valueIdentityDescription
A0A6J1ESI73.1e-63100.00Uncharacterized protein OS=Cucurbita moschata OX=3662 GN=LOC111437171 PE=4 SV=1[more]
A0A6J1JN612.8e-5692.06Uncharacterized protein OS=Cucurbita maxima OX=3661 GN=LOC111486202 PE=4 SV=1[more]
A0A6J1C2S11.1e-2057.03uncharacterized protein LOC111007924 OS=Momordica charantia OX=3673 GN=LOC111007... [more]
A0A1S3C0F76.2e-1954.20uncharacterized protein LOC103495585 OS=Cucumis melo OX=3656 GN=LOC103495585 PE=... [more]
A0A0A0K3L16.4e-1653.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044250 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G21710.11.8e-0735.19unknown protein; Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bac... [more]
AT3G21710.21.8e-0735.19unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availablePANTHERPTHR33974:SF2VASCULAR-RELATED UNKNOWN PROTEIN 1-RELATEDcoord: 18..125
IPR039280VASCULAR-RELATED UNKNOWN PROTEINPANTHERPTHR33974VASCULAR-RELATED UNKNOWN PROTEIN 1-RELATEDcoord: 18..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G019080.1CmoCh11G019080.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010089 xylem development