CmoCh11G018970 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G018970
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein RRP6-like 3 isoform X1
Location	Cmo_Chr11: 13176398 .. 13188668 (-)
RNA-Seq Expression	CmoCh11G018970
Synteny	CmoCh11G018970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAAAAAAAAAAAAAAACGAAGGAAAAAACGAGAACGGAGCCATTGATTCTAATGGAGCTTCATCGCAAGGACAAAATCGCTTTAGTTGTAGCGTCTCTTGCAGCGCTAACAATCTACTTTACGGCCAGACGGCGCCGGAAGCAGAGGAGCGTTCGTAGTTCGTGTTATTTGCGAGATGATCAGAAGCCTCAGTACGCATTTAAACGCGTCTTGGCTGACAATTCTTATTCTGCGTTCAAACATTTGAAGCTCGATATGAATACAGGTGAAGTTAGTCGGTTACTCTATTTCAAATATGATATTGTGTTTAGCTGCCGAGACTTTGAGTCATGTTATTAGAAGCAAATGGAGAGTTTAATGAATGAACGATATGATAAGGAGCTATGATTTAGTTTTTTATTGGATTTAGCAACCTTAATCTAAGTTGTTAATTGCATTTAGAAATGTTTGTTTGGGAAATGATGATTTATGTGCTTTTTAAGCTGAATAATTTCCATGGAGCAATAGGATGTAGGGAATGAAAATCTGGAAGATTCTTTTTATTATTTCTTTAATTTAATAGTTGGCGAAAAGTGCTCATAAGTATTTGAAATTTACTCTTGTTAGGATTGTTAGCAACAATTCTTTCATGAATGGCTTTCATTTGTCTTCTCGTCAATCTTCAAGCTCCATTTCTCGTAAAAGATTTTGCAATGGTAGCTCTCAATGTTCTTACAAGGGGGTTGGCTGAGTGAAGTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGACAATGATGTAAACTCTCATCCCTACGAATCAGAAATACTATCGTTGTTGGAAAATTCTTCGTCAGAATTTGATTTTATTAGTAGTGAAAGAAACGATTTTACCTTGAGTGACACTTATGTTTGGGTTGAGACCGCTTCTCAATTGGAAGAACTCGTGGATGTGTTGAATAAAGAAATGGTGTTTGCTGTTGATACCGAGCAGCACAGTCTAAGATCTTTTCTGGGCTTCACTGCTTTAGTACAGGTAAATTTATTCTCTCTCGCTCTCTCTCTCACACACACACAGTCTATCTCTAAGGGCCTTTGTACACGTAAATTGATGAGTCTTTCCTTGCAATCCCCGCCTAGTTAATTTTCACGTTCATGTTTTTGTTTTTTATTTTGTTTGAAGCAGATTTCTACAGACAAGGAAGATTATTTGGTTGACACTATAGCTCTACATGATTCGATGAGTCTTCTACGTCCCGTCTTTGCCAATAGTCATATTTGCAAGGTACCGAAATATGTGCTTGGGTACTGGTTTAAGGATTTGATTTCTGACAAGCTTGGTATCTAGATTAAAAGCAATGTTTCAGAACCCCATCAATTTGGTATTGATGAGAAAAGTGAAGCAGTTGCATCAGCTGGAGGAATTCTATTGATTCTCTTCTTTGGGTTAATGTTTTATTTGGTATTAGAAAACTTTAGTTTATGAATGCAAGGTACCCATTAAATTAGTTTTTGTGTTTAGGTGTTTCATGGTGCTGATAATGACATTCTCTGGCTACAAAGGGACTTCCACATATATGTAGTCAATTTATTTGACACTGCGAAGGTGAGGATATGCTTTTTAAAGGAAAGAAATATTACCTATATAAGGAGGAAATATGGAGCTATGCACTTCTCATGTGTGAAAGAGTGAGAGGTCTTTCTTTTTTTTTTTCCCTGTTTTCATCTTGTGCTTGTTGTTACAATGTAGGCCTGTGAAGTGCTGTCAAAACCTCAGAAGTCACTGGCCTACTTACTAGAAACTTATTGTGGGGTAGCTACGAACAAAATGTTGCAGGTTGGACATCTTGTCTTGAAAATGCACTATGTTGTATGAGAATCAACATCTTGATCATCTGATTTCGTATGTAAGATAACTATAGTGGTTGTAGGCATTTGATGCTGAAATATTAATTTTCCTGATCATACTTGTAAGAATTTGTGAAACTAGCATTTTATAACATGTCTATCGTCATGTTCTATTCTATTTGAAAATAGTGACGTCGCACTAGTTGCATGTTTGACTGTCCAAGATTGCCATAGAGCTATTTCAAATGATGTGTAAATTTACTAAACCTATTTTACTTACAGCCTCAACTTAAATAAGATAAGGATTGATCATATCCTATCTTGTTATACATATAACGGCCTTTTTGGTCTTGCTTATTTGTGGTTATTCATTAATGGTCAGCGAGAAGATTGGAGACTAAGACCCCTATCAGAAGATATGGTGCGGTATGCTAGGACAGATGCCCACTACCTCCTACATATTGCAAACTGTTTACTTTCTGAGCTGAAACAGGTTAATGGTATGTCTTGGATCCGTTTGTGTTTGCTGCCATTCATTTTTTTTTTTTTTTGTATAAGTTGTACTGTAAATGTGGAGAAATAAAAATGGATGGAAGATGAACATGATGATAACTAGAAATAAGGAAGAAAATAGGGCCATACTCGAGTAATGTATTAAAAGATTTTGTTAACTTATTGTGCAGTTTTCATAATAGATTCAATAGTGCAAATATTATCATCGATATTTTTTTTAACATTAATGTCTTAATATCGGTGAGCCACATTTCTCTACCATCTTCTGAAGATGTGAAATTTTTTAATTAAAAAATGGTTTTAGATATTGATTCACGCGCATTCTTTTTATGGCATGGTAGACAAAATGTAGAATTATGTATAATTTATTTGAGTGGCTTTAAAATTTTATTTATCAATTCAATTTTATTTTTCTTATAAACTACAATGATTTCGTTATTTTTTTAGGATTGTTCATTGATACTCAGCATCCATGTTCCATTAAGTTTGAGATTTTGATATTTTGGTTGATATCGATATATCAATATTTACTTCTTGCTCGTTCTTCGCATATTCCCATTTCTCATATCATGACTTTGACATTTTCATCTTTGATTACTCCAAACATTCGGGAAAAAAGCCTTTAAGGCCAGAGGCAGAGTAATTAACATTTTAGTTGGCTACCTTCAAATTATATATCATCCCATATCATTAGATATCTAAATGCATTAATGTAGCAGAAAACTCTTCCACCGATGGTAAATTCAATTTTCTTCTTGAGGCTAGTCGGCGATCAAACATGATTTGTTTGCAACTTTACACAAAAGAAACTGAAGGTTCTCCTGGAGAGTCTGCTGCATCATCAATATGTTACCGTCATCTAAACAGTCAATTAAATTCCTTTAAAACTCAAGTGAGCTGCTTTCTCAACAACTTTGATGTTATATCATTTGAAGTAGTACCACAATACAAAATTTTGAAATTCTATTACCTGACTTTGAACTTTCAGTTTCAGGATCATGTGAGGAGATTATGTGCTTGGCGAGACTTAATGGTCAGTAGTTAATCATCATAAAAAAATGAAGAACATAATTGCTTATTCTCTAAGCTTTTTATATTTATTTTATTTTGAATTTTTATCAATTTGATCTTACTCCGTTAGGTATTTTATGTCTAAGGGGGTTTCGTGTTTTCTAATTGAGAAGGAACCATTTTGGTACTCAGTAATAGCTTGTGTTAATTCTTTATAGGATGGACGCTAGGGTTTGGTTCACTAAGTGTTTTAAGACTCGCAAGATTCCCCTAAAATTTCATCTATAAATGTAAATATTCGATGGGAGAGCATTTTCATTTCAAAATTTGTATAATGGTATGGTCGAAGAAGACTTCTATTAGGCAACCGTGGGCTTTTCCACCAACCTCTAATAGTAGTTTTTCTCTTAATATCGAATGTGCCCACCTCTAAAAAGTTGATATTGACCTTTTACTGTAAATACTCCCACAGTAGTTGGTTGCTTAGGTTGAGAAGTAACCTTCCAGATGGCGAGACAGAAGATTGGGTCTCTGTGATGAACTCTTTGGAAGTTTAATCATGACACCTTAGTGAGGATCCAAATTTTATTGTATGAAGATTGGTTGTTTATTTATTTATTTTTTGATAGGAAACAAAAGAAAATTAAATGAAAGAAGATTGGACGTTAAAGGAGCATACTTGACTATGTTGTTCTATAGTCATCTTACAAATAGGGAAAATCTTTTTTCTAAATAGGTGGCTAGAGTTATAGGCAGGAATACATATTCCAAAAAGGTCAAAATCTTTATATGGTCTCTAGTTCTAAAAGACGGCTGTCATTTGAAAGAGAAATGATCTCAATTGCCTCTTTCCAATTTGGCTAAAAATTAGACATCCTGAAGGTTAGACTTGTTACTTCATCGTTGAGCCTGACTCATTACCACCTTTGTTACCGGTTCCTTCTGCTTATAAGGACCATAATAAGTAAATTAACTATGATGGTTGCTTTTTAGCAAACGGAAGTTCCACTATGGCTGCTTACCTGAATCTGAGATTGTCATTTCATTTCAGGCTCGAGTTCATGATGAGAGCCTGAGATATGTGTTGTCAGATCAGGCTATTATAGCTCTTGCTACTCAAATGTCAAAAAATACGAGGGAGTTATATGCAACTATTGCACAAGCTGATTTGAATGTGGATTTGAGCCCGAGTCTGCTTCTTCCAGGCCCCTCCCCTGTTGTTTGTAGCCATTTGGATGATCTCCACTGTCTTCTCCGTGACAAGTCTGGTGACCTGGATAATATATTTTTGGGGATTTTACAAAACTGTATAGGTTCTAATGGCAGTTGTCCCCTTTCTATATTTAATTATGCGCTGTTGGTCAAGTATAATCTAAAAATGATGACAATATCTAAAAAAAATGATAGAAGAAACGCAAAGAAAATGTCTAAAAAAGCTTCTAGAGAGCTTTTTGTGCAGAAGTTCTCCTGCAAATCTCCAGTTTATCATAATTGTAGGATTTATGCAAATGATGGGCGCTTGCTTTGCTACTGTGATCGGCGAAAACTTGAATGGTTGGTTAGCATCTCTTAGTTTTATTTCATGCAAGTTATAATTAAAACTGGTTATGCAATTGTGTTTGACAACATGCAACTATCTTTGTATTTAAACAGGTATTTGCGGCGAGAGTTGGCAGAGCTTGTTGATGATGATCCTCCTGCCATAAAGATTCTTTTTGAACCTAAAGGCCGTCCAGAAGATGAGGGCAATGACTTTTATATCCAGAGCAAAAAGAATATATGTGTTGGTTGTGGTGAAGGAAACCACTATTTACGTTATCGAATAATCCCCTCATGCTACAGAATACATTTTCCTGAGCATTTAAAAAGTCATCGTTCCCATGATATTGTCTTACTTTGTGTGGATTGTCATGAAGTTGCCCATGCTGCTGCTGAGAAGCACAAGAGAAATCTTGCTGCAGAATTTGGAATTCCACTTTTTGTTCGTAGGGTGGTTGATACCAAGGAGGCCTTTGATTTAGTTGAGTCATCTGACTCGGCCACCAACTTTCAGGAGGAAGGTGTGTCACCTTTAGAATTAAGAACAGCTGCTATGGCCCTGTTGCGGCATGGACCAAGGATGCCACCAAAACGTCAAGAGGAACTCATGCATGTATGTGTTGTGTACTTTGCAATTGAGATAGTCTTCGTATATGTGTCTATGTATATGTGTCCATGTGATTTAGAAATAAACATGCAGTTCAATGCTTGAGATACTAATAATTGACTCGAGTCATCTGCTATCGTAGCCATTGAAAAGATCTTTGGTTTCATGATATCAAATGCTTAATCATTTAATAGTGCTCCATCTTGGTAGAAATTTATCATTCAAGATTTTCTTGGTGCTATAGGATTAAATTAATCATCAATTATAGTAATTAGCATGTTTTCATATTCTCCATCAGTAGTTTGAGACGGTGAAGAAGGTCCTGAACATCATTCATTAGTATGCTGTAGGTATTGGCCCTTTGTAGACAATGGTTTTTAGTTATGTAGTTCCCATTCTTGTAGAATCTTCAGTAACACCCGGTAATTGTTGATTATCAATCCCTCTGAAATTCAAATTATATATTTTCCTCATCTCTCCTATCTTTGTTGTGTTTTCAGGTTGTTATGAGATACTATGGGCGGAGGGAGATATCTGAAGAAGATTTGGAAAAGGCTCTGCTTGTTGGCATGAGTCCTCATGAGAGAAGACGACTTCAGAAGAAAAAGGGTATAGCTTTGAAACATTCAGGACAGCATATTTTTCCAGATGCTGAGCATCAGAATGGTGCTTGTAGCATTGACTCATCGACTGTGACTAATTCATCCATTGGTATGTGCAGACTAGTTCGCTTTTGCTGATACATGTATTTTGCAAACGATAAAATGTTGTTCATAAGGGCGGAAAATAAGTACTTCAAGCAGTCATTCTTTCTGTTCTAATTCAATGCAGATGCAGATGCAGATGTTAACAATCACATGAACTCAGATAATGGTACCGTGCCCGAAACATGTTTGCCTTGTGGAGAGGTCAAAGTTTCTGATAACGGCTCCGCCATAACTGCTCAACCTAAATTCAATTCTAAATTGTCACTCTTGGGACATGGACCACATGGTAAACAAGTAGTGGATCATCTACTTGCAGAATATGGCGAGGATGGCATCCGACAGTTTTGTCAAAGGTGGAGACAAGTGTTTGTTGCTGCTATTCAACCTCGTTTCTTACCCGCTGGTTGGGATGTCAACCACAGGTACACTGAATTACTTAATTTCAACTCCAAGCTTCAAAATGGGAGCACATTGCATGTCTCTTTTATGCTAACATTTCTTGTCTTATATAAAAATGATTATCATTTCTTACCTTGTAAGGCATTGCACTATTTCAGTACCAATTACACTTCAAAGAGTGTTTGGGGCTGGGTAGAGTTAATAACTCCACTCCAACGTAAATTAGAGTACTACGTAACAGTTTTTTAATCCATAAAAATCTCCCTATCTCCTTCCGCATGTCATCTACAAATTTACAATTTTTTTTTTTTTGAAGTTTTGTTATGTTCATATTGTCAGTATTATTGGAATGGTCTGATTTGTGGACACTAGAAAGTTCCACTTCTTTTTTGTTCCAGTGGTAGAAGGGACTTCGGCGAATTCAGTGTGTACAATTCTATAAAGAAACTTTCCCCTACTATTGAGTAGGACCATTTGAAGCACTGCAAAATTCTCATGTTGCATGTAATGCCAGCATCACATTCTATGCTAGGAATTAGCAGATTATCTTCTCGTCATTCCCACAAGTAAAATCTCTCCATTTGAATGGTGCACGTTATGTTTCTGTTATTTTTAATGTCTCTGCACTGAGGAAGTTGGTTTATTCAACTTTGTGCAGATTTTGTGTATTAAAAGATTAAGATGGCGGCATTGTCCTTGTCCCCATCTTGTGAGACTTTCATCTCTCTTTCTTAACTGGCTTCATGCTTGGCTCTGGATTTTTTTGACTAAACATTCTTGAATTATTTAGCATAGCTTAGCGGATATAATTTGCAAAGGAAGGGAACTGCAGTAGAGCTTACCTACAATTTAAATGGAATTCATTACTGAAGTCATTTCCAGGTAAACGATTGACCCTTTGTCTTTTTAATATAAGGTTAATAGTCTTCTAAATATTTCACATTAATCTTTTAGGTAATTCTTCATTTGGTCTTTAACCTTCTGAAATTCTTGTTTTTTGTAATGTATTGAAAATTCTCAATGCTGTTCTTCCATAACATACCTAGATATGTGTGTATTCCATTTAAACATCCAAACTTAGGAGAAATAAGTATTTCTTATAGCAGGTAGAGATTGATGTCAAATAACATTCGAGGGACATGCTTAGAACACTAACTTAATGATATAACTTTTTATTAACAACTTTTTTTTTTTGTTTGTTTAGGATCTAATTTAGAATTGTATGTATATTAGGAGTAAAATTGAGAACCGGAAAAGCTTAATGGTGAAATTGAGAATATTCAACAAGATTAGAAATTATTTAGGATATATAGTAGATGATCTTTATTTCTATTCAAAGGTTCAAATGTCAACATCAGGCAGAGTGTTATCTATCATATTGGATTATGCCTGACGTTAACAATCTTTATATGTCTAGGCAAGTATCTCACATCTTAACCACAATTGAAAGATAAAAGAACACACATTTAGAGATTCCTTTTCTACATATGAACTTTTGTTAGAATACCAAATATACTGTGAAAAATAGATTAGATTACGAAGAACTTGAAAGTTCTTGGCAAACGTGTTTACTTCTTAAAAAATAAAATAGGAAATTTTCATTTAACGTGGAGCTTATAACCTTATAACCTTATCAGTCAACATTGTATAAACTGGTAATTATCAAAATCTTGACATTAAGAATGCTTAGTTAAGACATTATTTTCTTAGCCACTCGTAGAAAAGGACAGTCTAACAAACTGAGGATTTTGGGGTGGAGTTTATTTTTCTAACAATAATGGCAGGGCCTTTGCAATTGAATTCAACTTGTGTAGGAGCAACAACCTAACAATCATAAGGTAAAGTACCTTTGGCCAACCATATATTGTAAGCGATGTAGATTTCAGATCAGTAGCTAAGCCTTGATTTGATAATTGTTTGGTTTTTTATTTTAAATTTTTTGAAAATTAAGCTTATTTTTTCATGATTTTGTACATCTTTCTTATTCAAATTTAAAAAATAAAAACAAAGACAAAATTTTAATATATGGTACAAGTCTTTTCGTTTTATTTGTTTATTTTGGTCCATGGCTTTTGAAACTTAAACAACTTTGATCATTGATTTTTTTTTTTTGTCTAATGTTAAAGTCAATGGGACCAAATTGCAAAATAGATAAAAATTAAAGACCAAAAGAAGAAATAAAAAAAAGAATGAGTTTGAGGTCAGGGTTTTGGGTCTATGAATATTGTTTTTTTATAGTCTCTCATGAACCAAATCTATACTTTTAAAACCACTTTAGTACTATTTTCGTTTTTTTTGCTTCTCATTGTCCATGCTTTTTGTTTCTGGTTTTCTCTTTTCAATAGTAATATTAATAAAATAAAAAAGAATTAAATAGTGTAACTTGTTCGTGTTTCTTGTTATTTATGTTTACCTACATTTATAAATGTTTCCCAATTGTTACATGTCTATCATTCAAATTATTGTTGGCATGTTTTTGAAGAAGAGAGCATAGATATAGGTATCATGTTAGGTGAGCCACCCACTCCCACATGTAGCCATCTGACCCATTCCAAAGTCTTAGGATTTAGAAGACTTTAGAAAAAGTATGATTATAAGAGAGTATGAGATGGAAAGGGTGAGGGTTAGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGCCACATGGCTGTCGGTTGTAATGGTGAGTGGATGTAGATGGAAATGGCGTTTGCTGCCTTGGCTTTGTCTTTGGGGCCTACGCTCGTGGCTTGTGACCACTCCCTCCTGTTTTGTTCCATACCTATTTATGCCCTCAAAACCCATCATCATTATCATTGCCTTTCATAGATCATTATTCTACTCTTTAGGTTTTCCATCTTTAGGACTTTGTACAAACTTATCCATTGCCTTTATTCAACTTCTAGCTTCATATGAACAAACTACCTAGGTGGAGCTAACAAAACCTACGGAACACAAATAGGTTTGACGTTTTGAAGCTGATGTTGATTTCTTATACTAATTTCGACTTACGAGTCAATATTGATTTTTTATGGCTTTTGTTATATCAAGCACTTTCTTTTTCTGTGTTCAGACTATCTTTGTCTTTTTATAGTGTCCTATATAATATTAGTTTTGTTGTCCTAGTCAAATTTATTTGGTTTGTTTTGTGGAAGAATGAAGCCAAGGATCAGCAGCCTTCTAGAGCTAGAGTTCAACTTTCTTTGTAGAGAATAGGGAAGGTTTAATTACTCTCATTAGACTCCGACCCAATTTTCAAAGCGTCTTAAATTATTAGGGTCTTGTTTGAAAATTGTTTGGCTCTTGAAAAAATTATGGGTGTTTTTTTTCTTTTTCATAAAAAACGGAAAATGTTTAAAAGCTTAATTTTCAAAAACAAAAAACAAAATTTAAGTTTTCCACTAGAAAGCAAATCTAAGATCTTGAACAGTACCTCTAAGCATCTCGAATTCTAATATAAATAAATAGTCAATAATTTTAACGTATAAAATATATATATTTTTTAAAAACTTAAATATAATACAAGCTAAGATATGATCCACACACCACATACACCTTTGGACTCATAAAGGAAAAAGGAAATTTCCTTAATTTAAAGTCTCTTTCCATCATAAACCAAATGGGTCCAAGTTTGATTGATTCAATAAATTCACCCTTTATTCTAGAGTTTTAAGAAGCATACCCTACAAAAGGACAGATAATTAAGCTGTGTCAATAGACAAAAACTAGTGGATGTTATTGAAAGTAAATAAATCCTAACAAGGACGAGATATTTGCGTGGTAAAGCAACTAAAAGAAATGGTGGGAGAACCAATCATTTTTCTTAATCCCCTCATTAGATATCATTTCCAAAACAACTTGGCTGCTCATTCCTCTTCCTCTTAATTGGATTACGCTGTCTCCAACGACAGCACAAAATCTAAACCAAAATGATTAACAAACATTTGAAATCATCATTATTAAGAGCTAGCTTAAGAACTATAAATTTGTTACGACAAGACTGTTATGATCAAATCCAAACTCTTTACGAGTGCCTGCAAAGATGCTTAAGAACTGTCTGTTGAACATAAGACGGTTGATCTGAGAGAGGAAACGAGTTGTACATAAGACTGTTATGATCAAATCCAAACTATAGTTTAAGAACTATACGTTGATCTGAGAGAGGAAACAAGTGCTAGCAAGGATGCTGAGTACGAAGAGGGTGAATTATGAAATCCCACATCGGTGGAAAAGGGGAACAAAGTATTCTTTATAAGGATGTGGAAACTTCTCCCTAGCAGAAACGTTTTAAAACCTTTAGGAGAAACTTTTAAAGGAAAAACCCGAATAAGACAATATCTGCTAGCGGTGGGCTTGGACTATTAGATTAACCGTTAAAATTCTATAGTTTAAACGATTGAAATAGAATTAAACCAATATCTATCTCTAGTTGGATGCTCAGATAGAATTGGAAAACCAAACCATACACAAATTCTAGTTGAAATTGGTGAAGAAAATGCAAAAATGAATGGAGGGCGTCCTTGAACAGTGTAGTTTGTTGTATTTGGCTATCAGATGTCTTTTCAGGGTAAGTGCTTGAAACAGTGATCTCTCTGCAGGCTGTAAACAACGACAATGCAATCTATGTTGGTTTAAAAACTTTGCAAGAGATTCTTCTCTATTTGTATTGTTATTCCAAACTGACAAGGTTTCTACCATCCATAGGAGCCAGAAAAAAGTGAAAAAGGCAGAGGCTTAGAATAAGAATGGGCAGCTCGATGGGTAAAAGGCTGTGCAACAAGCTGGTGGGTATGCACAGAAAACGTAGCAATCAGAGTGGGTGTGGTGCTGGAAGATTAGAATGCCAACCTTAGTTCTCTTCTAAGTTTCACCTATTAGAGACTTATTAAATTTCCATATGATTTTACTGCATTTTCATGGCCATATGTATTGAAACTATAGGTTTCTTTTGATCGTATTACATTTTTCTTCATCAACCTAGCTCAATTGACATAAGTTACGTATTCTCGACTAGAGATTGAATAAATTATTGATTAATAGTTAGGAAAAGTATAATAGGAAACAACGTCGACTGTCGTATT

mRNA sequence

AAAAAAAAAAAAAAAAAAAAAAAAAAAAACGAAGGAAAAAACGAGAACGGAGCCATTGATTCTAATGGAGCTTCATCGCAAGGACAAAATCGCTTTAGTTGTAGCGTCTCTTGCAGCGCTAACAATCTACTTTACGGCCAGACGGCGCCGGAAGCAGAGGAGCGTTCGTAGTTCGTGTTATTTGCGAGATGATCAGAAGCCTCAGTACGCATTTAAACGCGTCTTGGCTGACAATTCTTATTCTGCGTTCAAACATTTGAAGCTCGATATGAATACAGACAATGATGTAAACTCTCATCCCTACGAATCAGAAATACTATCGTTGTTGGAAAATTCTTCGTCAGAATTTGATTTTATTAGTAGTGAAAGAAACGATTTTACCTTGAGTGACACTTATGTTTGGGTTGAGACCGCTTCTCAATTGGAAGAACTCGTGGATGTGTTGAATAAAGAAATGGTGTTTGCTGTTGATACCGAGCAGCACAGTCTAAGATCTTTTCTGGGCTTCACTGCTTTAGTACAGATTTCTACAGACAAGGAAGATTATTTGGTTGACACTATAGCTCTACATGATTCGATGAGTCTTCTACGTCCCGTCTTTGCCAATAGTCATATTTGCAAGGTGTTTCATGGTGCTGATAATGACATTCTCTGGCTACAAAGGGACTTCCACATATATGTAGTCAATTTATTTGACACTGCGAAGGCCTGTGAAGTGCTGTCAAAACCTCAGAAGTCACTGGCCTACTTACTAGAAACTTATTGTGGGGTAGCTACGAACAAAATGTTGCAGCGAGAAGATTGGAGACTAAGACCCCTATCAGAAGATATGGTGCGGTATGCTAGGACAGATGCCCACTACCTCCTACATATTGCAAACTGTTTACTTTCTGAGCTGAAACAGGTTAATGCAGAAAACTCTTCCACCGATGGTAAATTCAATTTTCTTCTTGAGGCTAGTCGGCGATCAAACATGATTTGTTTGCAACTTTACACAAAAGAAACTGAAGGTTCTCCTGGAGAGTCTGCTGCATCATCAATATGTTACCGTCATCTAAACAGTCAATTAAATTCCTTTAAAACTCAATTTCAGGATCATGTGAGGAGATTATGTGCTTGGCGAGACTTAATGGCTCGAGTTCATGATGAGAGCCTGAGATATGTGTTGTCAGATCAGGCTATTATAGCTCTTGCTACTCAAATGTCAAAAAATACGAGGGAGTTATATGCAACTATTGCACAAGCTGATTTGAATGTGGATTTGAGCCCGAGTCTGCTTCTTCCAGGCCCCTCCCCTGTTGTTTGTAGCCATTTGGATGATCTCCACTGTCTTCTCCGTGACAAGTCTGGTGACCTGGATAATATATTTTTGGGGATTTTACAAAACTGTATAGGTTCTAATGGCAGTTGTCCCCTTTCTATATTTAATTATGCGCTGTTGGTCAAGTATAATCTAAAAATGATGACAATATCTAAAAAAAATGATAGAAGAAACGCAAAGAAAATGTCTAAAAAAGCTTCTAGAGAGCTTTTTGTGCAGAAGTTCTCCTGCAAATCTCCAGTTTATCATAATTGTAGGATTTATGCAAATGATGGGCGCTTGCTTTGCTACTGTGATCGGCGAAAACTTGAATGGTATTTGCGGCGAGAGTTGGCAGAGCTTGTTGATGATGATCCTCCTGCCATAAAGATTCTTTTTGAACCTAAAGGCCGTCCAGAAGATGAGGGCAATGACTTTTATATCCAGAGCAAAAAGAATATATGTGTTGGTTGTGGTGAAGGAAACCACTATTTACGTTATCGAATAATCCCCTCATGCTACAGAATACATTTTCCTGAGCATTTAAAAAGTCATCGTTCCCATGATATTGTCTTACTTTGTGTGGATTGTCATGAAGTTGCCCATGCTGCTGCTGAGAAGCACAAGAGAAATCTTGCTGCAGAATTTGGAATTCCACTTTTTGTTCGTAGGGTGGTTGATACCAAGGAGGCCTTTGATTTAGTTGAGTCATCTGACTCGGCCACCAACTTTCAGGAGGAAGGTGTGTCACCTTTAGAATTAAGAACAGCTGCTATGGCCCTGTTGCGGCATGGACCAAGGATGCCACCAAAACGTCAAGAGGAACTCATGCATGTTGTTATGAGATACTATGGGCGGAGGGAGATATCTGAAGAAGATTTGGAAAAGGCTCTGCTTGTTGGCATGAGTCCTCATGAGAGAAGACGACTTCAGAAGAAAAAGGGTATAGCTTTGAAACATTCAGGACAGCATATTTTTCCAGATGCTGAGCATCAGAATGGTGCTTGTAGCATTGACTCATCGACTGTGACTAATTCATCCATTGATGCAGATGCAGATGTTAACAATCACATGAACTCAGATAATGGTACCGTGCCCGAAACATGTTTGCCTTGTGGAGAGGTCAAAGTTTCTGATAACGGCTCCGCCATAACTGCTCAACCTAAATTCAATTCTAAATTGTCACTCTTGGGACATGGACCACATGGTAAACAAGTAGTGGATCATCTACTTGCAGAATATGGCGAGGATGGCATCCGACAGTTTTGTCAAAGGTGGAGACAAGTGTTTGTTGCTGCTATTCAACCTCGTTTCTTACCCGCTGGTTGGGATGTCAACCACAGTGGTAGAAGGGACTTCGGCGAATTCAGTGTGTACAATTCTATAAAGAAACTTTCCCCTACTATTGAGTAGGACCATTTGAAGCACTGCAAAATTCTCATGTTGCATGTAATGCCAGCATCACATTCTATGCTAGGAATTAGCAGATTATCTTCTCGTCATTCCCACAAATTTTGTGTATTAAAAGATTAAGATGGCGGCATTGTCCTTGTCCCCATCTTCATAGCTTAGCGGATATAATTTGCAAAGGAAGGGAACTGCAGTAGAGCTTACCTACAATTTAAATGGAATTCATTACTGAAGTCATTTCCAGGAGCCAGAAAAAAGTGAAAAAGGCAGAGGCTTAGAATAAGAATGGGCAGCTCGATGGGTAAAAGGCTGTGCAACAAGCTGGTGGGTATGCACAGAAAACGTAGCAATCAGAGTGGGTGTGGTGCTGGAAGATTAGAATGCCAACCTTAGTTCTCTTCTAAGTTTCACCTATTAGAGACTTATTAAATTTCCATATGATTTTACTGCATTTTCATGGCCATATGTATTGAAACTATAGGTTTCTTTTGATCGTATTACATTTTTCTTCATCAACCTAGCTCAATTGACATAAGTTACGTATTCTCGACTAGAGATTGAATAAATTATTGATTAATAGTTAGGAAAAGTATAATAGGAAACAACGTCGACTGTCGTATT

Coding sequence (CDS)

ATGGAGCTTCATCGCAAGGACAAAATCGCTTTAGTTGTAGCGTCTCTTGCAGCGCTAACAATCTACTTTACGGCCAGACGGCGCCGGAAGCAGAGGAGCGTTCGTAGTTCGTGTTATTTGCGAGATGATCAGAAGCCTCAGTACGCATTTAAACGCGTCTTGGCTGACAATTCTTATTCTGCGTTCAAACATTTGAAGCTCGATATGAATACAGACAATGATGTAAACTCTCATCCCTACGAATCAGAAATACTATCGTTGTTGGAAAATTCTTCGTCAGAATTTGATTTTATTAGTAGTGAAAGAAACGATTTTACCTTGAGTGACACTTATGTTTGGGTTGAGACCGCTTCTCAATTGGAAGAACTCGTGGATGTGTTGAATAAAGAAATGGTGTTTGCTGTTGATACCGAGCAGCACAGTCTAAGATCTTTTCTGGGCTTCACTGCTTTAGTACAGATTTCTACAGACAAGGAAGATTATTTGGTTGACACTATAGCTCTACATGATTCGATGAGTCTTCTACGTCCCGTCTTTGCCAATAGTCATATTTGCAAGGTGTTTCATGGTGCTGATAATGACATTCTCTGGCTACAAAGGGACTTCCACATATATGTAGTCAATTTATTTGACACTGCGAAGGCCTGTGAAGTGCTGTCAAAACCTCAGAAGTCACTGGCCTACTTACTAGAAACTTATTGTGGGGTAGCTACGAACAAAATGTTGCAGCGAGAAGATTGGAGACTAAGACCCCTATCAGAAGATATGGTGCGGTATGCTAGGACAGATGCCCACTACCTCCTACATATTGCAAACTGTTTACTTTCTGAGCTGAAACAGGTTAATGCAGAAAACTCTTCCACCGATGGTAAATTCAATTTTCTTCTTGAGGCTAGTCGGCGATCAAACATGATTTGTTTGCAACTTTACACAAAAGAAACTGAAGGTTCTCCTGGAGAGTCTGCTGCATCATCAATATGTTACCGTCATCTAAACAGTCAATTAAATTCCTTTAAAACTCAATTTCAGGATCATGTGAGGAGATTATGTGCTTGGCGAGACTTAATGGCTCGAGTTCATGATGAGAGCCTGAGATATGTGTTGTCAGATCAGGCTATTATAGCTCTTGCTACTCAAATGTCAAAAAATACGAGGGAGTTATATGCAACTATTGCACAAGCTGATTTGAATGTGGATTTGAGCCCGAGTCTGCTTCTTCCAGGCCCCTCCCCTGTTGTTTGTAGCCATTTGGATGATCTCCACTGTCTTCTCCGTGACAAGTCTGGTGACCTGGATAATATATTTTTGGGGATTTTACAAAACTGTATAGGTTCTAATGGCAGTTGTCCCCTTTCTATATTTAATTATGCGCTGTTGGTCAAGTATAATCTAAAAATGATGACAATATCTAAAAAAAATGATAGAAGAAACGCAAAGAAAATGTCTAAAAAAGCTTCTAGAGAGCTTTTTGTGCAGAAGTTCTCCTGCAAATCTCCAGTTTATCATAATTGTAGGATTTATGCAAATGATGGGCGCTTGCTTTGCTACTGTGATCGGCGAAAACTTGAATGGTATTTGCGGCGAGAGTTGGCAGAGCTTGTTGATGATGATCCTCCTGCCATAAAGATTCTTTTTGAACCTAAAGGCCGTCCAGAAGATGAGGGCAATGACTTTTATATCCAGAGCAAAAAGAATATATGTGTTGGTTGTGGTGAAGGAAACCACTATTTACGTTATCGAATAATCCCCTCATGCTACAGAATACATTTTCCTGAGCATTTAAAAAGTCATCGTTCCCATGATATTGTCTTACTTTGTGTGGATTGTCATGAAGTTGCCCATGCTGCTGCTGAGAAGCACAAGAGAAATCTTGCTGCAGAATTTGGAATTCCACTTTTTGTTCGTAGGGTGGTTGATACCAAGGAGGCCTTTGATTTAGTTGAGTCATCTGACTCGGCCACCAACTTTCAGGAGGAAGGTGTGTCACCTTTAGAATTAAGAACAGCTGCTATGGCCCTGTTGCGGCATGGACCAAGGATGCCACCAAAACGTCAAGAGGAACTCATGCATGTTGTTATGAGATACTATGGGCGGAGGGAGATATCTGAAGAAGATTTGGAAAAGGCTCTGCTTGTTGGCATGAGTCCTCATGAGAGAAGACGACTTCAGAAGAAAAAGGGTATAGCTTTGAAACATTCAGGACAGCATATTTTTCCAGATGCTGAGCATCAGAATGGTGCTTGTAGCATTGACTCATCGACTGTGACTAATTCATCCATTGATGCAGATGCAGATGTTAACAATCACATGAACTCAGATAATGGTACCGTGCCCGAAACATGTTTGCCTTGTGGAGAGGTCAAAGTTTCTGATAACGGCTCCGCCATAACTGCTCAACCTAAATTCAATTCTAAATTGTCACTCTTGGGACATGGACCACATGGTAAACAAGTAGTGGATCATCTACTTGCAGAATATGGCGAGGATGGCATCCGACAGTTTTGTCAAAGGTGGAGACAAGTGTTTGTTGCTGCTATTCAACCTCGTTTCTTACCCGCTGGTTGGGATGTCAACCACAGTGGTAGAAGGGACTTCGGCGAATTCAGTGTGTACAATTCTATAAAGAAACTTTCCCCTACTATTGAGTAG

Protein sequence

MELHRKDKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYSAFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNAENSSTDGKFNFLLEASRRSNMICLQLYTKETEGSPGESAASSICYRHLNSQLNSFKTQFQDHVRRLCAWRDLMARVHDESLRYVLSDQAIIALATQMSKNTRELYATIAQADLNVDLSPSLLLPGPSPVVCSHLDDLHCLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKKNDRRNAKKMSKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPAIKILFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKHKRNLAAEFGIPLFVRRVVDTKEAFDLVESSDSATNFQEEGVSPLELRTAAMALLRHGPRMPPKRQEELMHVVMRYYGRREISEEDLEKALLVGMSPHERRRLQKKKGIALKHSGQHIFPDAEHQNGACSIDSSTVTNSSIDADADVNNHMNSDNGTVPETCLPCGEVKVSDNGSAITAQPKFNSKLSLLGHGPHGKQVVDHLLAEYGEDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNSIKKLSPTIE

Homology

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BLAST of CmoCh11G018970 vs. ExPASy Swiss-Prot
Match: A9LLI8 (Protein RRP6-like 3 OS=Arabidopsis thaliana OX=3702 GN=RRP6L3 PE=2 SV=1)

HSP 1 Score: 1120.1 bits (2896), Expect = 0.0e+00
Identity = 573/906 (63.25%), Postives = 701/906 (77.37%), Query Frame = 0


Query: 1   MELHRKDKIALVVASLAALTIYFTA-----RRRRKQRSVRSSCYLRDDQKPQYAFKRVLA 60
           MEL  K K+ + VASL A+TI F       R+RRKQ S  SSCYL  + KPQ+ FKRVLA
Sbjct: 1   MELKEKAKVVITVASLVAVTILFVTEYRRRRQRRKQTSSLSSCYLHSELKPQFGFKRVLA 60

Query: 61  DNSYSAFKHLKL----DMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTY 120
           DNSYS FKHLKL      + +   N HPYE+EI  LLEN   EF F+  E +   +SD+Y
Sbjct: 61  DNSYSEFKHLKLVDASSSSLEKPSNGHPYETEITVLLENPQIEFGFLRGECS-LEMSDSY 120

Query: 121 VWVETASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDS 180
           VWVET SQL+EL ++L KE VFAVDTEQHSLRSFLGFTAL+QIST +ED+LVDTIALHD 
Sbjct: 121 VWVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIALHDV 180

Query: 181 MSLLRPVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLE 240
           MS+LRPVF++ +ICKVFHGADND++WLQRDFHIYVVN+FDTAKACEVLSKPQ+SLAYLLE
Sbjct: 181 MSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQRSLAYLLE 240

Query: 241 TYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNAENSST-DG 300
           T CGVATNK+LQREDWR RPLSE+MVRYARTDAHYLL+IA+ L +ELKQ+  E+SS+ D 
Sbjct: 241 TVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLATEDSSSPDD 300

Query: 301 KFNFLLEASRRSNMICLQLYTKETEGSPGESAASSICYRHLN--SQLNSFKTQFQDHVRR 360
           +F+FLLEASRRSNM CLQLYTKETE  PG +A+SSI YRHLN     ++     ++ VR+
Sbjct: 301 RFHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLNGHGDKSNISLNAEELVRK 360

Query: 361 LCAWRDLMARVHDESLRYVLSDQAIIALATQMSKNTRELYATIAQADLNVDLSPSL--LL 420
           LCAWRDLM R+HDES RYVLSDQAI+ L+ +    T E+Y TIA  DL  + SPSL   +
Sbjct: 361 LCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEIYDTIAHIDLATESSPSLSSSV 420

Query: 421 PGPSPVVCSHLDDLHCLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKM 480
             P PV+CSHLDD++ ++ DK   LD++   +L+ C+G+NG+CP+S+FNY+LLV +  K+
Sbjct: 421 QSPYPVICSHLDDIYKMILDKLAKLDDLLPVVLKKCLGTNGTCPISVFNYSLLVNFKTKL 480

Query: 481 MTIS--KKNDRRNAK-KMSKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLE 540
            + S  K+N  +N K + ++KASRELFV+KFSCK+PVYHNCRIYANDGRLLCYCD+RKLE
Sbjct: 481 SSHSAPKQNGHKNFKQQFTRKASRELFVKKFSCKAPVYHNCRIYANDGRLLCYCDKRKLE 540

Query: 541 WYLRRELAELVDDDPPAIKILFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIP 600
           WYL R LA+LV+++PPAI +LFEPKGRPEDEGNDFYIQ+K+NICVGCGEG HYLRYRIIP
Sbjct: 541 WYLNRGLAKLVEENPPAIMLLFEPKGRPEDEGNDFYIQTKRNICVGCGEGKHYLRYRIIP 600

Query: 601 SCYRIHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKHKRNLAAEFGIPLFVRRVVDTKEA 660
           SCYR+HFPEHLKSHRSHDIVLLCVDCHEVAHAAAE++K+ +A EFGIPLFVRRV+D+KEA
Sbjct: 601 SCYRVHFPEHLKSHRSHDIVLLCVDCHEVAHAAAERYKKQIATEFGIPLFVRRVLDSKEA 660

Query: 661 ---FDLVESSDSATNFQEEGVSPLELRTAAMALLRHGPRMPPKRQEELMHVVMRYYGRRE 720
                LVE  +S  + ++ GVSPL LR+AAMALLRHG RMP  R+EEL+  V  YYG R+
Sbjct: 661 QGTSSLVE-DESTGDSEDAGVSPLHLRSAAMALLRHGNRMPSSRREELLQTVKMYYGGRD 720

Query: 721 ISEEDLEKALLVGMSPHERRRLQKKKGIALKHSGQHIFPDAEHQNGACSIDSSTVTNSSI 780
           +SEEDLEKALL+G+SPHERR+L++KKG++ KHS +              +D     N+  
Sbjct: 721 LSEEDLEKALLIGLSPHERRKLERKKGVSFKHSAE-----------VAGMDKQEDENNDG 780

Query: 781 DADADVNNHMNSDNGTVPE-----TCLPCGEVKVSD---NGSAITAQPKFNSKLSLLGHG 840
           +A AD    M  +  TV +     T    G  +++D   NG+ +  Q   NSKLSLLGHG
Sbjct: 781 EALADFEKIMTVERSTVVDDSGDGTSEGDGAKELNDTQCNGNTLHQQ---NSKLSLLGHG 840

Query: 841 PHGKQVVDHLLAEYGEDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYN 879
           PHGKQ+V++LL E+GEDG+R FCQRWR+VFV A+ PR LP GW+V+HSGRRDFGEFSVYN
Sbjct: 841 PHGKQIVEYLLREHGEDGVRDFCQRWRKVFVDAVHPRHLPGGWNVSHSGRRDFGEFSVYN 890

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BLAST of CmoCh11G018970 vs. ExPASy Swiss-Prot
Match: A9LLI7 (Protein RRP6-like 2 OS=Arabidopsis thaliana OX=3702 GN=RRP6L2 PE=2 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.1e-55
Identity = 138/349 (39.54%), Postives = 195/349 (55.87%), Query Frame = 0


Query: 44  QKPQYAFKRVLADNSYSAFKHLKLDMNTDNDVNSHPYES-EILSLLENSSSEFDFISSER 103
           +KPQ  +  +L +N+   F+H+ L+ + D+    HP E   +L  ++   +E + +    
Sbjct: 196 KKPQEEY-NILVNNANLPFEHVWLERSEDDLRAMHPLEKFSVLDFVDKDVNEMEPVKPLP 255

Query: 104 NDFTLSDTYVWVETASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYL 163
            + T    + +V+    L+ELV  L     FAVD E +  RSF G T L+QIST  EDY+
Sbjct: 256 LEQT---PFKFVQEVKDLKELVAKLRSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYI 315

Query: 164 VDTIALHDSMS-LLRPVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSK 223
           VDT  L   +   LR +F +    KV HGAD DI+WLQRDF IYV NLFDT +A  VL+ 
Sbjct: 316 VDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLNL 375

Query: 224 PQKSLAYLLETYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQV 283
            + SL +LL+ +CGV  NK  Q  DWR+RPL E+M RYAR D HYLL+I + +  EL+++
Sbjct: 376 ERNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQRM 435

Query: 284 NAENSSTDGKFNFLLEASRRSNMICLQLYTKE--TEGSPGESAASSICYRHL-NSQLNSF 343
             +++ TD     LLE  +RS  +C QLY KE  TE S          Y H+   Q   F
Sbjct: 436 AKDDAHTDSP---LLEVYKRSYDVCTQLYEKELLTENS----------YLHVYGLQAAGF 495

Query: 344 KTQFQDHVRRLCAWRDLMARVHDESLRYVLSDQAIIALATQMSKNTREL 388
                  V  LC WRD +AR  DES  YVL ++ ++ +A +M  +  +L
Sbjct: 496 NAAQLAIVAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPDSVGKL 527

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BLAST of CmoCh11G018970 vs. ExPASy Swiss-Prot
Match: Q0WVE8 (Protein RRP6-like 1 OS=Arabidopsis thaliana OX=3702 GN=RRP6L1 PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 4.7e-54
Identity = 135/339 (39.82%), Postives = 186/339 (54.87%), Query Frame = 0


Query: 45  KPQYAFKRVLADNSYSAFKHLKLDMNTDNDVNSHPYES-EILSLLENSSSEFDFISSERN 104
           KPQ  +K +L DN+ + F+H+ L+ + D     HP E   ++  ++ + SE   +     
Sbjct: 52  KPQEEYK-ILVDNANNPFEHVLLEKSEDGLRFIHPLEELSVMDFVDRNLSEMRPV----K 111

Query: 105 DFTLSDT-YVWVETASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYL 164
              L +T +  VE    LE+L   L     FAVD E +  R+F G T L+QIST  EDY+
Sbjct: 112 PLPLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTEDYI 171

Query: 165 VDTIALHDSMS-LLRPVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSK 224
           VD   L D +   LR +F +    KV HGAD DI+WLQRDF IYV NLFDT +A  VL  
Sbjct: 172 VDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKL 231

Query: 225 PQKSLAYLLETYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQV 284
            + SL +LL+ YCGVA NK  Q+ DWR+RPL + M RYAR D HYLL+I + +  EL  +
Sbjct: 232 ERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRMELHTM 291

Query: 285 NAENSSTDGKFNFLLEASRRSNMICLQLYTKETEGSPGESAASSICYRHLNSQLNSFKTQ 344
             E+  +D     L+E  +RS  +C+QLY KE            +   +LN+   S    
Sbjct: 292 AKEDEQSDSP---LVEVYKRSYDVCMQLYEKELWTRDSYLHVYGVQTGNLNAVQLSI--- 351

Query: 345 FQDHVRRLCAWRDLMARVHDESLRYVLSDQAIIALATQM 381
               V  LC WRD +AR  DES  YVL ++ +  +A +M
Sbjct: 352 ----VAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEM 375

[Close]

BLAST of CmoCh11G018970 vs. ExPASy Swiss-Prot
Match: Q10146 (Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp6 PE=3 SV=2)

HSP 1 Score: 199.1 bits (505), Expect = 2.0e-49
Identity = 126/337 (37.39%), Postives = 184/337 (54.60%), Query Frame = 0


Query: 65  LKLDMNTDNDVNSHPYESEILS-----LLENSSSEFDFISSERNDFTLSDTYVWVETASQ 124
           +KLD +  N +  HPYE EI +      +   S+  D  S +  +       +WV T SQ
Sbjct: 174 VKLDPSLKNSL-PHPYEPEIQNSVYPPWVSEMSNPIDTGSVDETE------PIWVSTESQ 233

Query: 125 LEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVF 184
           L +++  L      AVD E H  RSF GF  L+QIS  ++D++VDT+ L + +  L  VF
Sbjct: 234 LSDMLKELQNSKEIAVDLEHHDYRSFRGFVCLMQISNREKDWIVDTLELREELEALNVVF 293

Query: 185 ANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATN 244
            N +I KVFHGA  DI+WLQRDF +YVVNLFDT  A +VL      LA+LL+ YC    +
Sbjct: 294 TNPNIIKVFHGATMDIIWLQRDFGLYVVNLFDTYYATKVLGFEGHGLAFLLQKYCDYDAD 353

Query: 245 KMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNAENSSTDGKFNFLLEAS 304
           K  Q  DWR+RPL  +M++YA++D HYLL+I + L +EL   +AE      K N +    
Sbjct: 354 KRYQMADWRIRPLPREMLKYAQSDTHYLLYIWDHLRNELISKSAER-----KENLMQSVF 413

Query: 305 RRSNMICLQLYTKETEGSPGESAASSICYRHLNSQLNSFKTQFQDHV---RRLCAWRDLM 364
             S  I L+ Y  E E         +  +R++ ++  S K   ++ +   R L  WRD +
Sbjct: 414 NSSKQISLRKY--ELEPYDPIYGLGTDGWRNVLTKFGSSKIIGREALMIYRALHDWRDSV 473

Query: 365 ARVHDESLRYVLSDQAIIALATQMSKNTRELYATIAQ 394
           AR  DES+RYVL ++ +IA+A        ++++   Q
Sbjct: 474 ARKEDESVRYVLPNRLLIAIAASKPVEAADVFSISKQ 496

[Close]

BLAST of CmoCh11G018970 vs. ExPASy Swiss-Prot
Match: P56960 (Exosome component 10 OS=Mus musculus OX=10090 GN=Exosc10 PE=1 SV=2)

HSP 1 Score: 193.7 bits (491), Expect = 8.6e-48
Identity = 125/333 (37.54%), Postives = 179/333 (53.75%), Query Frame = 0


Query: 62  FKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQLE 121
           F H +     + D+ +HPY+ E    L++ +     +   +     +         S L+
Sbjct: 240 FIHQQRTQQVEQDMFAHPYQYE----LDHFTPPQSVLQRPKPQLYRAVGETPCHLVSSLD 299

Query: 122 ELVDVLNKEMV----FAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRP 181
           ELV+ LN++++    FAVD E HS RSFLG T L+QIST  ED++VDT+ L   M +L  
Sbjct: 300 ELVE-LNEKLLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLELRSDMYILNE 359

Query: 182 VFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVA 241
              +  I KVFHGAD+DI WLQ+DF +YVVN+FDT +A  +L+  + SL +LL  YCGV 
Sbjct: 360 SLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVE 419

Query: 242 TNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNAENSSTDGKFNFLLE 301
           +NK  Q  DWR+RPL E+M+ YAR D HYLL+I + +  EL +              L  
Sbjct: 420 SNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDRMRLELWERGNHQPVQ------LQV 479

Query: 302 ASRRSNMICLQLYTKETEGSPGESAASSICYRHLNS-QLNSFKTQFQDHVRRLCAWRDLM 361
             +RS  ICL+ + K                +HLNS QL +F+  F        AWRD  
Sbjct: 480 VWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQLTAFQLLF--------AWRDKT 539

Query: 362 ARVHDESLRYVLSDQAIIALATQMSKNTRELYA 390
           AR  DES  YVL +  ++ +A ++ K  + + A
Sbjct: 540 ARREDESYGYVLPNHMMLKIAEELPKEPQGIIA 553

[Close]

BLAST of CmoCh11G018970 vs. ExPASy TrEMBL
Match: A0A6J1ESK7 (protein RRP6-like 3 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437193 PE=4 SV=1)

HSP 1 Score: 1776.9 bits (4601), Expect = 0.0e+00
Identity = 882/882 (100.00%), Postives = 882/882 (100.00%), Query Frame = 0


Query: 1   MELHRKDKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MELHRKDKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELHRKDKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL 120
           AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL
Sbjct: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL 120

Query: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180
           EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180

Query: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNAENSSTDGKFNFLLEASR 300
           MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNAENSSTDGKFNFLLEASR
Sbjct: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNAENSSTDGKFNFLLEASR 300

Query: 301 RSNMICLQLYTKETEGSPGESAASSICYRHLNSQLNSFKTQFQDHVRRLCAWRDLMARVH 360
           RSNMICLQLYTKETEGSPGESAASSICYRHLNSQLNSFKTQFQDHVRRLCAWRDLMARVH
Sbjct: 301 RSNMICLQLYTKETEGSPGESAASSICYRHLNSQLNSFKTQFQDHVRRLCAWRDLMARVH 360

Query: 361 DESLRYVLSDQAIIALATQMSKNTRELYATIAQADLNVDLSPSLLLPGPSPVVCSHLDDL 420
           DESLRYVLSDQAIIALATQMSKNTRELYATIAQADLNVDLSPSLLLPGPSPVVCSHLDDL
Sbjct: 361 DESLRYVLSDQAIIALATQMSKNTRELYATIAQADLNVDLSPSLLLPGPSPVVCSHLDDL 420

Query: 421 HCLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKKNDRRNAKK 480
           HCLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKKNDRRNAKK
Sbjct: 421 HCLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKKNDRRNAKK 480

Query: 481 MSKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPA 540
           MSKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPA
Sbjct: 481 MSKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPA 540

Query: 541 IKILFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSH 600
           IKILFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSH
Sbjct: 541 IKILFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSH 600

Query: 601 DIVLLCVDCHEVAHAAAEKHKRNLAAEFGIPLFVRRVVDTKEAFDLVESSDSATNFQEEG 660
           DIVLLCVDCHEVAHAAAEKHKRNLAAEFGIPLFVRRVVDTKEAFDLVESSDSATNFQEEG
Sbjct: 601 DIVLLCVDCHEVAHAAAEKHKRNLAAEFGIPLFVRRVVDTKEAFDLVESSDSATNFQEEG 660

Query: 661 VSPLELRTAAMALLRHGPRMPPKRQEELMHVVMRYYGRREISEEDLEKALLVGMSPHERR 720
           VSPLELRTAAMALLRHGPRMPPKRQEELMHVVMRYYGRREISEEDLEKALLVGMSPHERR
Sbjct: 661 VSPLELRTAAMALLRHGPRMPPKRQEELMHVVMRYYGRREISEEDLEKALLVGMSPHERR 720

Query: 721 RLQKKKGIALKHSGQHIFPDAEHQNGACSIDSSTVTNSSIDADADVNNHMNSDNGTVPET 780
           RLQKKKGIALKHSGQHIFPDAEHQNGACSIDSSTVTNSSIDADADVNNHMNSDNGTVPET
Sbjct: 721 RLQKKKGIALKHSGQHIFPDAEHQNGACSIDSSTVTNSSIDADADVNNHMNSDNGTVPET 780

Query: 781 CLPCGEVKVSDNGSAITAQPKFNSKLSLLGHGPHGKQVVDHLLAEYGEDGIRQFCQRWRQ 840
           CLPCGEVKVSDNGSAITAQPKFNSKLSLLGHGPHGKQVVDHLLAEYGEDGIRQFCQRWRQ
Sbjct: 781 CLPCGEVKVSDNGSAITAQPKFNSKLSLLGHGPHGKQVVDHLLAEYGEDGIRQFCQRWRQ 840

Query: 841 VFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNSIKKLSPTIE 883
           VFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNSIKKLSPTIE
Sbjct: 841 VFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNSIKKLSPTIE 882

[Close]

BLAST of CmoCh11G018970 vs. ExPASy TrEMBL
Match: A0A6J1EWH5 (protein RRP6-like 3 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437193 PE=4 SV=1)

HSP 1 Score: 1765.7 bits (4572), Expect = 0.0e+00
Identity = 881/884 (99.66%), Postives = 881/884 (99.66%), Query Frame = 0


Query: 1   MELHRKDKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MELHRKDKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELHRKDKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL 120
           AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL
Sbjct: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL 120

Query: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180
           EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180

Query: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNAENSSTDGKFNFLLEASR 300
           MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVN ENSSTDGKFNFLLEASR
Sbjct: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVN-ENSSTDGKFNFLLEASR 300

Query: 301 RSNMICLQLYTKETEGSPGESAASSICYRHLNSQLNSFKTQFQDHVRRLCAWRDLMARVH 360
           RSNMICLQLYTKETEGSPGESAASSICYRHLNSQLNSFKTQFQDHVRRLCAWRDLMARVH
Sbjct: 301 RSNMICLQLYTKETEGSPGESAASSICYRHLNSQLNSFKTQFQDHVRRLCAWRDLMARVH 360

Query: 361 DESLRYVLSDQAIIALATQMSKNTRELYATIAQADLNVDLSPSLLLPGPSPVVCSHLDDL 420
           DESLRYVLSDQAIIALATQMSKNTRELYATIAQADLNVDLSPSLLLPGPSPVVCSHLDDL
Sbjct: 361 DESLRYVLSDQAIIALATQMSKNTRELYATIAQADLNVDLSPSLLLPGPSPVVCSHLDDL 420

Query: 421 HCLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKKNDRRNAKK 480
           HCLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKKNDRRNAKK
Sbjct: 421 HCLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKKNDRRNAKK 480

Query: 481 MSKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPA 540
           MSKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPA
Sbjct: 481 MSKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPA 540

Query: 541 IKILFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSH 600
           IKILFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSH
Sbjct: 541 IKILFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSH 600

Query: 601 DIVLLCVDCHEVAHAAAEKHKRNLAAEFGIPLFVRRVVDTKEAFDLVESSDSATNFQEEG 660
           DIVLLCVDCHEVAHAAAEKHKRNLAAEFGIPLFVRRVVDTKEAFDLVESSDSATNFQEEG
Sbjct: 601 DIVLLCVDCHEVAHAAAEKHKRNLAAEFGIPLFVRRVVDTKEAFDLVESSDSATNFQEEG 660

Query: 661 VSPLELRTAAMALLRHGPRMPPKRQEELMHVVMRYYGRREISEEDLEKALLVGMSPHERR 720
           VSPLELRTAAMALLRHGPRMPPKRQEELMHVVMRYYGRREISEEDLEKALLVGMSPHERR
Sbjct: 661 VSPLELRTAAMALLRHGPRMPPKRQEELMHVVMRYYGRREISEEDLEKALLVGMSPHERR 720

Query: 721 RLQKKKGIALKHSGQHIFPDAEHQNGACSIDSSTVTNSSI--DADADVNNHMNSDNGTVP 780
           RLQKKKGIALKHSGQHIFPDAEHQNGACSIDSSTVTNSSI  DADADVNNHMNSDNGTVP
Sbjct: 721 RLQKKKGIALKHSGQHIFPDAEHQNGACSIDSSTVTNSSIDADADADVNNHMNSDNGTVP 780

Query: 781 ETCLPCGEVKVSDNGSAITAQPKFNSKLSLLGHGPHGKQVVDHLLAEYGEDGIRQFCQRW 840
           ETCLPCGEVKVSDNGSAITAQPKFNSKLSLLGHGPHGKQVVDHLLAEYGEDGIRQFCQRW
Sbjct: 781 ETCLPCGEVKVSDNGSAITAQPKFNSKLSLLGHGPHGKQVVDHLLAEYGEDGIRQFCQRW 840

Query: 841 RQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNSIKKLSPTIE 883
           RQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNSIKKLSPTIE
Sbjct: 841 RQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNSIKKLSPTIE 883

[Close]

BLAST of CmoCh11G018970 vs. ExPASy TrEMBL
Match: A0A6J1JK94 (protein RRP6-like 3 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485940 PE=4 SV=1)

HSP 1 Score: 1745.7 bits (4520), Expect = 0.0e+00
Identity = 867/882 (98.30%), Postives = 871/882 (98.75%), Query Frame = 0


Query: 1   MELHRKDKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MEL RK KIALVVAS AALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELQRKAKIALVVASFAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL 120
           AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL
Sbjct: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL 120

Query: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180
           EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180

Query: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAK CEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKTCEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNAENSSTDGKFNFLLEASR 300
           MLQREDWR RPLSEDMVRYARTDAHYLLHIANCLLSELKQVNAENSSTDGKFNFLLEASR
Sbjct: 241 MLQREDWRQRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNAENSSTDGKFNFLLEASR 300

Query: 301 RSNMICLQLYTKETEGSPGESAASSICYRHLNSQLNSFKTQFQDHVRRLCAWRDLMARVH 360
           RSNMICLQLYTKETEGSPGESAASSICYRHLNSQLNSFKTQFQDHVRRLCAWRDLMARVH
Sbjct: 301 RSNMICLQLYTKETEGSPGESAASSICYRHLNSQLNSFKTQFQDHVRRLCAWRDLMARVH 360

Query: 361 DESLRYVLSDQAIIALATQMSKNTRELYATIAQADLNVDLSPSLLLPGPSPVVCSHLDDL 420
           DESLRYVLSDQAI ALATQMSKN+ ELYATIAQADLNVDLSPSLLLPGPSPVVCSHLDDL
Sbjct: 361 DESLRYVLSDQAIAALATQMSKNSWELYATIAQADLNVDLSPSLLLPGPSPVVCSHLDDL 420

Query: 421 HCLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKKNDRRNAKK 480
           HCLLRDKSGD D+IFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKKNDRRNAKK
Sbjct: 421 HCLLRDKSGDPDSIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKKNDRRNAKK 480

Query: 481 MSKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPA 540
           MSKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPA
Sbjct: 481 MSKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPA 540

Query: 541 IKILFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSH 600
           IKILFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSH
Sbjct: 541 IKILFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSH 600

Query: 601 DIVLLCVDCHEVAHAAAEKHKRNLAAEFGIPLFVRRVVDTKEAFDLVESSDSATNFQEEG 660
           DIVLLCVDCHEVAHAAAEKHKRNLAAEFGIPLFVRRVVDTKEAFDLVESSDSATNFQEEG
Sbjct: 601 DIVLLCVDCHEVAHAAAEKHKRNLAAEFGIPLFVRRVVDTKEAFDLVESSDSATNFQEEG 660

Query: 661 VSPLELRTAAMALLRHGPRMPPKRQEELMHVVMRYYGRREISEEDLEKALLVGMSPHERR 720
           VSPLELRTAAMALLRHGPRMPPKRQEELMHVVMRYYGRREISEEDLEKALLVGMSPHERR
Sbjct: 661 VSPLELRTAAMALLRHGPRMPPKRQEELMHVVMRYYGRREISEEDLEKALLVGMSPHERR 720

Query: 721 RLQKKKGIALKHSGQHIFPDAEHQNGACSIDSSTVTNSSIDADADVNNHMNSDNGTVPET 780
           RLQKKKGIALKHSGQHIFPDAEHQNGACSIDSST+TNSSIDADADVNNHMNSDNGTVPET
Sbjct: 721 RLQKKKGIALKHSGQHIFPDAEHQNGACSIDSSTMTNSSIDADADVNNHMNSDNGTVPET 780

Query: 781 CLPCGEVKVSDNGSAITAQPKFNSKLSLLGHGPHGKQVVDHLLAEYGEDGIRQFCQRWRQ 840
           CLPCGEVKV +NGSAITAQPKFN KLSLLGHGPHGKQVVDHLLAEYGEDGIRQFCQRWRQ
Sbjct: 781 CLPCGEVKVPENGSAITAQPKFNPKLSLLGHGPHGKQVVDHLLAEYGEDGIRQFCQRWRQ 840

Query: 841 VFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNSIKKLSPTIE 883
           VFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNSIKKLSP IE
Sbjct: 841 VFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNSIKKLSPAIE 882

[Close]

BLAST of CmoCh11G018970 vs. ExPASy TrEMBL
Match: A0A6J1JM94 (protein RRP6-like 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485940 PE=4 SV=1)

HSP 1 Score: 1734.5 bits (4491), Expect = 0.0e+00
Identity = 866/884 (97.96%), Postives = 870/884 (98.42%), Query Frame = 0


Query: 1   MELHRKDKIALVVASLAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60
           MEL RK KIALVVAS AALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS
Sbjct: 1   MELQRKAKIALVVASFAALTIYFTARRRRKQRSVRSSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL 120
           AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL
Sbjct: 61  AFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQL 120

Query: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180
           EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVFA 180

Query: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAK CEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKTCEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNAENSSTDGKFNFLLEASR 300
           MLQREDWR RPLSEDMVRYARTDAHYLLHIANCLLSELKQVN ENSSTDGKFNFLLEASR
Sbjct: 241 MLQREDWRQRPLSEDMVRYARTDAHYLLHIANCLLSELKQVN-ENSSTDGKFNFLLEASR 300

Query: 301 RSNMICLQLYTKETEGSPGESAASSICYRHLNSQLNSFKTQFQDHVRRLCAWRDLMARVH 360
           RSNMICLQLYTKETEGSPGESAASSICYRHLNSQLNSFKTQFQDHVRRLCAWRDLMARVH
Sbjct: 301 RSNMICLQLYTKETEGSPGESAASSICYRHLNSQLNSFKTQFQDHVRRLCAWRDLMARVH 360

Query: 361 DESLRYVLSDQAIIALATQMSKNTRELYATIAQADLNVDLSPSLLLPGPSPVVCSHLDDL 420
           DESLRYVLSDQAI ALATQMSKN+ ELYATIAQADLNVDLSPSLLLPGPSPVVCSHLDDL
Sbjct: 361 DESLRYVLSDQAIAALATQMSKNSWELYATIAQADLNVDLSPSLLLPGPSPVVCSHLDDL 420

Query: 421 HCLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKKNDRRNAKK 480
           HCLLRDKSGD D+IFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKKNDRRNAKK
Sbjct: 421 HCLLRDKSGDPDSIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKKNDRRNAKK 480

Query: 481 MSKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPA 540
           MSKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPA
Sbjct: 481 MSKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVDDDPPA 540

Query: 541 IKILFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSH 600
           IKILFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSH
Sbjct: 541 IKILFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSH 600

Query: 601 DIVLLCVDCHEVAHAAAEKHKRNLAAEFGIPLFVRRVVDTKEAFDLVESSDSATNFQEEG 660
           DIVLLCVDCHEVAHAAAEKHKRNLAAEFGIPLFVRRVVDTKEAFDLVESSDSATNFQEEG
Sbjct: 601 DIVLLCVDCHEVAHAAAEKHKRNLAAEFGIPLFVRRVVDTKEAFDLVESSDSATNFQEEG 660

Query: 661 VSPLELRTAAMALLRHGPRMPPKRQEELMHVVMRYYGRREISEEDLEKALLVGMSPHERR 720
           VSPLELRTAAMALLRHGPRMPPKRQEELMHVVMRYYGRREISEEDLEKALLVGMSPHERR
Sbjct: 661 VSPLELRTAAMALLRHGPRMPPKRQEELMHVVMRYYGRREISEEDLEKALLVGMSPHERR 720

Query: 721 RLQKKKGIALKHSGQHIFPDAEHQNGACSIDSSTVTNSSI--DADADVNNHMNSDNGTVP 780
           RLQKKKGIALKHSGQHIFPDAEHQNGACSIDSST+TNSSI  DADADVNNHMNSDNGTVP
Sbjct: 721 RLQKKKGIALKHSGQHIFPDAEHQNGACSIDSSTMTNSSIDADADADVNNHMNSDNGTVP 780

Query: 781 ETCLPCGEVKVSDNGSAITAQPKFNSKLSLLGHGPHGKQVVDHLLAEYGEDGIRQFCQRW 840
           ETCLPCGEVKV +NGSAITAQPKFN KLSLLGHGPHGKQVVDHLLAEYGEDGIRQFCQRW
Sbjct: 781 ETCLPCGEVKVPENGSAITAQPKFNPKLSLLGHGPHGKQVVDHLLAEYGEDGIRQFCQRW 840

Query: 841 RQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNSIKKLSPTIE 883
           RQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNSIKKLSP IE
Sbjct: 841 RQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNSIKKLSPAIE 883

[Close]

BLAST of CmoCh11G018970 vs. ExPASy TrEMBL
Match: A0A6J1C5X3 (protein RRP6-like 3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007668 PE=4 SV=1)

HSP 1 Score: 1539.6 bits (3985), Expect = 0.0e+00
Identity = 775/887 (87.37%), Postives = 812/887 (91.54%), Query Frame = 0


Query: 1   MELHRKDKIALVVASLAALTIYFTARRRRKQRSVRSSCYLR-DDQKPQYAFKRVLADNSY 60
           MEL  K KI L VAS AALTI FTARRRRKQ+SVRSSCYLR DDQK QY FKRVLADNSY
Sbjct: 1   MELKHKVKIVLAVASFAALTILFTARRRRKQKSVRSSCYLRGDDQKXQYTFKRVLADNSY 60

Query: 61  SAFKHLKLDMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTYVWVETASQ 120
           S FKHLKL+MNTDNDVNSHPYESEILSLLENS  E+DF+ SER DFT SD YVWVET SQ
Sbjct: 61  SVFKHLKLNMNTDNDVNSHPYESEILSLLENSFPEYDFV-SERKDFTSSDAYVWVETESQ 120

Query: 121 LEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDSMSLLRPVF 180
           LEELVDVLNKEMVFAVDTEQHSLRSFLGFTAL+QIST KEDYLVD IALHDSM+LLRP+F
Sbjct: 121 LEELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQISTRKEDYLVDAIALHDSMNLLRPIF 180

Query: 181 ANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATN 240
           ANS ICKVFHGADNDILWLQRDFHIYVVNLFDTAKACE+LSKPQKSLAYLLETYCGVATN
Sbjct: 181 ANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACELLSKPQKSLAYLLETYCGVATN 240

Query: 241 KMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNAENSSTDGKFNFLLEAS 300
           KMLQREDWR RPLS +MV+YARTDAHYLLHIANCLLSELKQVN ENSSTD KFNFLLEAS
Sbjct: 241 KMLQREDWRQRPLSAEMVQYARTDAHYLLHIANCLLSELKQVN-ENSSTDDKFNFLLEAS 300

Query: 301 RRSNMICLQLYTKETEGSPGESAASSICYRHLNSQ----LNSFKTQFQDHVRRLCAWRDL 360
           RRSNMICLQLY KETEGSPGESAASSI  R LNSQ    + S KTQFQD VRRLCAWRDL
Sbjct: 301 RRSNMICLQLYAKETEGSPGESAASSISSRRLNSQGVSTIISCKTQFQDLVRRLCAWRDL 360

Query: 361 MARVHDESLRYVLSDQAIIALATQMSKNTRELYATIAQADLNVDLSPSLLLPGPSPVVCS 420
           MARVHDESLRYVLSDQAI+ALA ++ KNT ELYATIAQADL+VDLSPSL LP PSPVVCS
Sbjct: 361 MARVHDESLRYVLSDQAIVALANKVPKNTMELYATIAQADLHVDLSPSLFLPSPSPVVCS 420

Query: 421 HLDDLHCLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKKNDR 480
           HLDDLHCLL DKSGDLDNIFL ILQNCIGS+GSCPLSIFNYALLVKYNLKMMTISK N R
Sbjct: 421 HLDDLHCLLHDKSGDLDNIFLVILQNCIGSDGSCPLSIFNYALLVKYNLKMMTISKHNHR 480

Query: 481 RNAKKMSKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVD 540
           +NAK++SKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWY+RRELAELVD
Sbjct: 481 KNAKQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYVRRELAELVD 540

Query: 541 DDPPAIKILFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLK 600
           DDPPAIK+LFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLK
Sbjct: 541 DDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLK 600

Query: 601 SHRSHDIVLLCVDCHEVAHAAAEKHKRNLAAEFGIPLFVRRVVDTKEAFDLVESSDSATN 660
           SHRSHDIVLLCVDCHE+AHAAAEKHKR LAAEFGIPLFVRRVVDTKEAF+L E SDS TN
Sbjct: 601 SHRSHDIVLLCVDCHEIAHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFNLAEPSDSGTN 660

Query: 661 FQEEGVSPLELRTAAMALLRHGPRMPPKRQEELMHVVMRYYGRREISEEDLEKALLVGMS 720
           FQEEGVSPLELRTAAMALLRHGPRMP KRQEELM  VMRYYGRREISEEDLE+ALLVGMS
Sbjct: 661 FQEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLTVMRYYGRREISEEDLERALLVGMS 720

Query: 721 PHERRRLQKKKGIALKHSGQHIFPDAEHQNGACSIDSSTVTNSSIDADADVNNHMNSDNG 780
           PHERRRLQKK+GIALKHS Q  FP+AEHQNGAC ID+ST  NSS+    D+N+H NSD+G
Sbjct: 721 PHERRRLQKKRGIALKHSAQSNFPNAEHQNGACDIDTSTAVNSSV----DINSHTNSDSG 780

Query: 781 TVPETCLPCGEVKVSDNGSAITAQPKFNSKLSLLGHGPHGKQVVDHLLAEYGEDGIRQFC 840
           +V + CLP G+V  SDNGSA TAQPKFN KLSLLGHGPHGKQVVDHLL EYGE+GIRQFC
Sbjct: 781 SVSDKCLPGGQVGFSDNGSARTAQPKFNPKLSLLGHGPHGKQVVDHLLREYGEEGIRQFC 840

Query: 841 QRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNSIKKLSPTIE 883
           QRWRQVFVAA +PRFLPAGWDVNHSGRRDFGEFSVYN IKK SP+ E
Sbjct: 841 QRWRQVFVAATKPRFLPAGWDVNHSGRRDFGEFSVYNPIKKASPSNE 881

[Close]

BLAST of CmoCh11G018970 vs. TAIR 10
Match: AT2G32415.1 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain )

HSP 1 Score: 1122.8 bits (2903), Expect = 0.0e+00
Identity = 572/905 (63.20%), Postives = 700/905 (77.35%), Query Frame = 0


Query: 1   MELHRKDKIALVVASLAALTIYFTA-----RRRRKQRSVRSSCYLRDDQKPQYAFKRVLA 60
           MEL  K K+ + VASL A+TI F       R+RRKQ S  SSCYL  + KPQ+ FKRVLA
Sbjct: 1   MELKEKAKVVITVASLVAVTILFVTEYRRRRQRRKQTSSLSSCYLHSELKPQFGFKRVLA 60

Query: 61  DNSYSAFKHLKL----DMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTY 120
           DNSYS FKHLKL      + +   N HPYE+EI  LLEN   EF F+  E +   +SD+Y
Sbjct: 61  DNSYSEFKHLKLVDASSSSLEKPSNGHPYETEITVLLENPQIEFGFLRGECS-LEMSDSY 120

Query: 121 VWVETASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDS 180
           VWVET SQL+EL ++L KE VFAVDTEQHSLRSFLGFTAL+QIST +ED+LVDTIALHD 
Sbjct: 121 VWVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIALHDV 180

Query: 181 MSLLRPVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLE 240
           MS+LRPVF++ +ICKVFHGADND++WLQRDFHIYVVN+FDTAKACEVLSKPQ+SLAYLLE
Sbjct: 181 MSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQRSLAYLLE 240

Query: 241 TYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNAENSSTDGK 300
           T CGVATNK+LQREDWR RPLSE+MVRYARTDAHYLL+IA+ L +ELKQ+  ++SS D +
Sbjct: 241 TVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLATDSSSPDDR 300

Query: 301 FNFLLEASRRSNMICLQLYTKETEGSPGESAASSICYRHLN--SQLNSFKTQFQDHVRRL 360
           F+FLLEASRRSNM CLQLYTKETE  PG +A+SSI YRHLN     ++     ++ VR+L
Sbjct: 301 FHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLNGHGDKSNISLNAEELVRKL 360

Query: 361 CAWRDLMARVHDESLRYVLSDQAIIALATQMSKNTRELYATIAQADLNVDLSPSL--LLP 420
           CAWRDLM R+HDES RYVLSDQAI+ L+ +    T E+Y TIA  DL  + SPSL   + 
Sbjct: 361 CAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEIYDTIAHIDLATESSPSLSSSVQ 420

Query: 421 GPSPVVCSHLDDLHCLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMM 480
            P PV+CSHLDD++ ++ DK   LD++   +L+ C+G+NG+CP+S+FNY+LLV +  K+ 
Sbjct: 421 SPYPVICSHLDDIYKMILDKLAKLDDLLPVVLKKCLGTNGTCPISVFNYSLLVNFKTKLS 480

Query: 481 TIS--KKNDRRNAK-KMSKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEW 540
           + S  K+N  +N K + ++KASRELFV+KFSCK+PVYHNCRIYANDGRLLCYCD+RKLEW
Sbjct: 481 SHSAPKQNGHKNFKQQFTRKASRELFVKKFSCKAPVYHNCRIYANDGRLLCYCDKRKLEW 540

Query: 541 YLRRELAELVDDDPPAIKILFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPS 600
           YL R LA+LV+++PPAI +LFEPKGRPEDEGNDFYIQ+K+NICVGCGEG HYLRYRIIPS
Sbjct: 541 YLNRGLAKLVEENPPAIMLLFEPKGRPEDEGNDFYIQTKRNICVGCGEGKHYLRYRIIPS 600

Query: 601 CYRIHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKHKRNLAAEFGIPLFVRRVVDTKEA- 660
           CYR+HFPEHLKSHRSHDIVLLCVDCHEVAHAAAE++K+ +A EFGIPLFVRRV+D+KEA 
Sbjct: 601 CYRVHFPEHLKSHRSHDIVLLCVDCHEVAHAAAERYKKQIATEFGIPLFVRRVLDSKEAQ 660

Query: 661 --FDLVESSDSATNFQEEGVSPLELRTAAMALLRHGPRMPPKRQEELMHVVMRYYGRREI 720
               LVE  +S  + ++ GVSPL LR+AAMALLRHG RMP  R+EEL+  V  YYG R++
Sbjct: 661 GTSSLVE-DESTGDSEDAGVSPLHLRSAAMALLRHGNRMPSSRREELLQTVKMYYGGRDL 720

Query: 721 SEEDLEKALLVGMSPHERRRLQKKKGIALKHSGQHIFPDAEHQNGACSIDSSTVTNSSID 780
           SEEDLEKALL+G+SPHERR+L++KKG++ KHS +              +D     N+  +
Sbjct: 721 SEEDLEKALLIGLSPHERRKLERKKGVSFKHSAE-----------VAGMDKQEDENNDGE 780

Query: 781 ADADVNNHMNSDNGTVPE-----TCLPCGEVKVSD---NGSAITAQPKFNSKLSLLGHGP 840
           A AD    M  +  TV +     T    G  +++D   NG+ +  Q   NSKLSLLGHGP
Sbjct: 781 ALADFEKIMTVERSTVVDDSGDGTSEGDGAKELNDTQCNGNTLHQQ---NSKLSLLGHGP 840

Query: 841 HGKQVVDHLLAEYGEDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSVYNS 879
           HGKQ+V++LL E+GEDG+R FCQRWR+VFV A+ PR LP GW+V+HSGRRDFGEFSVYN 
Sbjct: 841 HGKQIVEYLLREHGEDGVRDFCQRWRKVFVDAVHPRHLPGGWNVSHSGRRDFGEFSVYNP 889

[Close]

BLAST of CmoCh11G018970 vs. TAIR 10
Match: AT2G32415.2 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain )

HSP 1 Score: 1089.7 bits (2817), Expect = 0.0e+00
Identity = 556/886 (62.75%), Postives = 683/886 (77.09%), Query Frame = 0


Query: 1   MELHRKDKIALVVASLAALTIYFTA-----RRRRKQRSVRSSCYLRDDQKPQYAFKRVLA 60
           MEL  K K+ + VASL A+TI F       R+RRKQ S  SSCYL  + KPQ+ FKRVLA
Sbjct: 1   MELKEKAKVVITVASLVAVTILFVTEYRRRRQRRKQTSSLSSCYLHSELKPQFGFKRVLA 60

Query: 61  DNSYSAFKHLKL----DMNTDNDVNSHPYESEILSLLENSSSEFDFISSERNDFTLSDTY 120
           DNSYS FKHLKL      + +   N HPYE+EI  LLEN   EF F+  E +   +SD+Y
Sbjct: 61  DNSYSEFKHLKLVDASSSSLEKPSNGHPYETEITVLLENPQIEFGFLRGECS-LEMSDSY 120

Query: 121 VWVETASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYLVDTIALHDS 180
           VWVET SQL+EL ++L KE VFAVDTEQHSLRSFLGFTAL+QIST +ED+LVDTIALHD 
Sbjct: 121 VWVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIALHDV 180

Query: 181 MSLLRPVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLE 240
           MS+LRPVF++ +ICKVFHGADND++WLQRDFHIYVVN+FDTAKACEVLSKPQ+SLAYLLE
Sbjct: 181 MSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQRSLAYLLE 240

Query: 241 TYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQVNAENSSTDGK 300
           T CGVATNK+LQREDWR RPLSE+MVRYARTDAHYLL+IA+ L +ELKQ+  ++SS D +
Sbjct: 241 TVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLATDSSSPDDR 300

Query: 301 FNFLLEASRRSNMICLQLYTKETEGSPGESAASSICYRHLN--SQLNSFKTQFQDHVRRL 360
           F+FLLEASRRSNM CLQLYTKETE  PG +A+SSI YRHLN     ++     ++ VR+L
Sbjct: 301 FHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLNGHGDKSNISLNAEELVRKL 360

Query: 361 CAWRDLMARVHDESLRYVLSDQAIIALATQMSKNTRELYATIAQADLNVDLSPSL--LLP 420
           CAWRDLM R+HDES RYVLSDQAI+ L+ +    T E+Y TIA  DL  + SPSL   + 
Sbjct: 361 CAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEIYDTIAHIDLATESSPSLSSSVQ 420

Query: 421 GPSPVVCSHLDDLHCLLRDKSGDLDNIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMM 480
            P PV+CSHLDD++ ++ DK   LD++   +L+ C+G+NG+CP+S+FNY+LLV +  K+ 
Sbjct: 421 SPYPVICSHLDDIYKMILDKLAKLDDLLPVVLKKCLGTNGTCPISVFNYSLLVNFKTKLS 480

Query: 481 TIS--KKNDRRNAK-KMSKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEW 540
           + S  K+N  +N K + ++KASRELFV+KFSCK+PVYHNCRIYANDGRLLCYCD+RKLEW
Sbjct: 481 SHSAPKQNGHKNFKQQFTRKASRELFVKKFSCKAPVYHNCRIYANDGRLLCYCDKRKLEW 540

Query: 541 YLRRELAELVDDDPPAIKILFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPS 600
           YL R LA+LV+++PPAI +LFEPKGRPEDEGNDFYIQ+K+NICVGCGEG HYLRYRIIPS
Sbjct: 541 YLNRGLAKLVEENPPAIMLLFEPKGRPEDEGNDFYIQTKRNICVGCGEGKHYLRYRIIPS 600

Query: 601 CYRIHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKHKRNLAAEFGIPLFVRRVVDTKEA- 660
           CYR+HFPEHLKSHRSHDIVLLCVDCHEVAHAAAE++K+ +A EFGIPLFVRRV+D+KEA 
Sbjct: 601 CYRVHFPEHLKSHRSHDIVLLCVDCHEVAHAAAERYKKQIATEFGIPLFVRRVLDSKEAQ 660

Query: 661 --FDLVESSDSATNFQEEGVSPLELRTAAMALLRHGPRMPPKRQEELMHVVMRYYGRREI 720
               LVE  +S  + ++ GVSPL LR+AAMALLRHG RMP  R+EEL+  V  YYG R++
Sbjct: 661 GTSSLVE-DESTGDSEDAGVSPLHLRSAAMALLRHGNRMPSSRREELLQTVKMYYGGRDL 720

Query: 721 SEEDLEKALLVGMSPHERRRLQKKKGIALKHSGQHIFPDAEHQNGACSIDSSTVTNSSID 780
           SEEDLEKALL+G+SPHERR+L++KKG++ KHS +              +D     N+  +
Sbjct: 721 SEEDLEKALLIGLSPHERRKLERKKGVSFKHSAE-----------VAGMDKQEDENNDGE 780

Query: 781 ADADVNNHMNSDNGTVPE-----TCLPCGEVKVSD---NGSAITAQPKFNSKLSLLGHGP 840
           A AD    M  +  TV +     T    G  +++D   NG+ +  Q   NSKLSLLGHGP
Sbjct: 781 ALADFEKIMTVERSTVVDDSGDGTSEGDGAKELNDTQCNGNTLHQQ---NSKLSLLGHGP 840

Query: 841 HGKQVVDHLLAEYGEDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNH 860
           HGKQ+V++LL E+GEDG+R FCQRWR+VFV A+ PR LP GW+V+H
Sbjct: 841 HGKQIVEYLLREHGEDGVRDFCQRWRKVFVDAVHPRHLPGGWNVSH 870

[Close]

BLAST of CmoCh11G018970 vs. TAIR 10
Match: AT5G35910.1 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain )

HSP 1 Score: 219.9 bits (559), Expect = 7.9e-57
Identity = 138/349 (39.54%), Postives = 195/349 (55.87%), Query Frame = 0


Query: 44  QKPQYAFKRVLADNSYSAFKHLKLDMNTDNDVNSHPYES-EILSLLENSSSEFDFISSER 103
           +KPQ  +  +L +N+   F+H+ L+ + D+    HP E   +L  ++   +E + +    
Sbjct: 196 KKPQEEY-NILVNNANLPFEHVWLERSEDDLRAMHPLEKFSVLDFVDKDVNEMEPVKPLP 255

Query: 104 NDFTLSDTYVWVETASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYL 163
            + T    + +V+    L+ELV  L     FAVD E +  RSF G T L+QIST  EDY+
Sbjct: 256 LEQT---PFKFVQEVKDLKELVAKLRSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYI 315

Query: 164 VDTIALHDSMS-LLRPVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSK 223
           VDT  L   +   LR +F +    KV HGAD DI+WLQRDF IYV NLFDT +A  VL+ 
Sbjct: 316 VDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLNL 375

Query: 224 PQKSLAYLLETYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQV 283
            + SL +LL+ +CGV  NK  Q  DWR+RPL E+M RYAR D HYLL+I + +  EL+++
Sbjct: 376 ERNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQRM 435

Query: 284 NAENSSTDGKFNFLLEASRRSNMICLQLYTKE--TEGSPGESAASSICYRHL-NSQLNSF 343
             +++ TD     LLE  +RS  +C QLY KE  TE S          Y H+   Q   F
Sbjct: 436 AKDDAHTDSP---LLEVYKRSYDVCTQLYEKELLTENS----------YLHVYGLQAAGF 495

Query: 344 KTQFQDHVRRLCAWRDLMARVHDESLRYVLSDQAIIALATQMSKNTREL 388
                  V  LC WRD +AR  DES  YVL ++ ++ +A +M  +  +L
Sbjct: 496 NAAQLAIVAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPDSVGKL 527

[Close]

BLAST of CmoCh11G018970 vs. TAIR 10
Match: AT1G54440.1 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain )

HSP 1 Score: 214.5 bits (545), Expect = 3.3e-55
Identity = 135/339 (39.82%), Postives = 186/339 (54.87%), Query Frame = 0


Query: 45  KPQYAFKRVLADNSYSAFKHLKLDMNTDNDVNSHPYES-EILSLLENSSSEFDFISSERN 104
           KPQ  +K +L DN+ + F+H+ L+ + D     HP E   ++  ++ + SE   +     
Sbjct: 52  KPQEEYK-ILVDNANNPFEHVLLEKSEDGLRFIHPLEELSVMDFVDRNLSEMRPV----K 111

Query: 105 DFTLSDT-YVWVETASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYL 164
              L +T +  VE    LE+L   L     FAVD E +  R+F G T L+QIST  EDY+
Sbjct: 112 PLPLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTEDYI 171

Query: 165 VDTIALHDSMS-LLRPVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSK 224
           VD   L D +   LR +F +    KV HGAD DI+WLQRDF IYV NLFDT +A  VL  
Sbjct: 172 VDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKL 231

Query: 225 PQKSLAYLLETYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQV 284
            + SL +LL+ YCGVA NK  Q+ DWR+RPL + M RYAR D HYLL+I + +  EL  +
Sbjct: 232 ERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRMELHTM 291

Query: 285 NAENSSTDGKFNFLLEASRRSNMICLQLYTKETEGSPGESAASSICYRHLNSQLNSFKTQ 344
             E+  +D     L+E  +RS  +C+QLY KE            +   +LN+   S    
Sbjct: 292 AKEDEQSDSP---LVEVYKRSYDVCMQLYEKELWTRDSYLHVYGVQTGNLNAVQLSI--- 351

Query: 345 FQDHVRRLCAWRDLMARVHDESLRYVLSDQAIIALATQM 381
               V  LC WRD +AR  DES  YVL ++ +  +A +M
Sbjct: 352 ----VAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEM 375

[Close]

BLAST of CmoCh11G018970 vs. TAIR 10
Match: AT1G54440.2 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain )

HSP 1 Score: 214.5 bits (545), Expect = 3.3e-55
Identity = 135/339 (39.82%), Postives = 186/339 (54.87%), Query Frame = 0


Query: 45  KPQYAFKRVLADNSYSAFKHLKLDMNTDNDVNSHPYES-EILSLLENSSSEFDFISSERN 104
           KPQ  +K +L DN+ + F+H+ L+ + D     HP E   ++  ++ + SE   +     
Sbjct: 52  KPQEEYK-ILVDNANNPFEHVLLEKSEDGLRFIHPLEELSVMDFVDRNLSEMRPV----K 111

Query: 105 DFTLSDT-YVWVETASQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALVQISTDKEDYL 164
              L +T +  VE    LE+L   L     FAVD E +  R+F G T L+QIST  EDY+
Sbjct: 112 PLPLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLMQISTRTEDYI 171

Query: 165 VDTIALHDSMS-LLRPVFANSHICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSK 224
           VD   L D +   LR +F +    KV HGAD DI+WLQRDF IYV NLFDT +A  VL  
Sbjct: 172 VDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKL 231

Query: 225 PQKSLAYLLETYCGVATNKMLQREDWRLRPLSEDMVRYARTDAHYLLHIANCLLSELKQV 284
            + SL +LL+ YCGVA NK  Q+ DWR+RPL + M RYAR D HYLL+I + +  EL  +
Sbjct: 232 ERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRMELHTM 291

Query: 285 NAENSSTDGKFNFLLEASRRSNMICLQLYTKETEGSPGESAASSICYRHLNSQLNSFKTQ 344
             E+  +D     L+E  +RS  +C+QLY KE            +   +LN+   S    
Sbjct: 292 AKEDEQSDSP---LVEVYKRSYDVCMQLYEKELWTRDSYLHVYGVQTGNLNAVQLSI--- 351

Query: 345 FQDHVRRLCAWRDLMARVHDESLRYVLSDQAIIALATQM 381
               V  LC WRD +AR  DES  YVL ++ +  +A +M
Sbjct: 352 ----VAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEM 375

The following BLAST results are available for this feature:

BLAST of CmoCh11G018970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9LLI8	0.0e+00	63.25	Protein RRP6-like 3 OS=Arabidopsis thaliana OX=3702 GN=RRP6L3 PE=2 SV=1	[more]
A9LLI7	1.1e-55	39.54	Protein RRP6-like 2 OS=Arabidopsis thaliana OX=3702 GN=RRP6L2 PE=2 SV=1	[more]
Q0WVE8	4.7e-54	39.82	Protein RRP6-like 1 OS=Arabidopsis thaliana OX=3702 GN=RRP6L1 PE=2 SV=1	[more]
Q10146	2.0e-49	37.39	Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]
P56960	8.6e-48	37.54	Exosome component 10 OS=Mus musculus OX=10090 GN=Exosc10 PE=1 SV=2	[more]

BLAST of CmoCh11G018970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ESK7	0.0e+00	100.00	protein RRP6-like 3 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437193 PE=...	[more]
A0A6J1EWH5	0.0e+00	99.66	protein RRP6-like 3 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437193 PE=...	[more]
A0A6J1JK94	0.0e+00	98.30	protein RRP6-like 3 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485940 PE=4 ...	[more]
A0A6J1JM94	0.0e+00	97.96	protein RRP6-like 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485940 PE=4 ...	[more]
A0A6J1C5X3	0.0e+00	87.37	protein RRP6-like 3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007668 PE...	[more]

BLAST of CmoCh11G018970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32415.1	0.0e+00	63.20	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain	[more]
AT2G32415.2	0.0e+00	62.75	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain	[more]
AT5G35910.1	7.9e-57	39.54	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain	[more]
AT1G54440.1	3.3e-55	39.82	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain	[more]
AT1G54440.2	3.3e-55	39.82	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002562	3'-5' exonuclease domain	SMART	SM00474	35exoneu6	coord: 111..279 e-value: 1.6E-42 score: 157.3
IPR002562	3'-5' exonuclease domain	PFAM	PF01612	DNA_pol_A_exo1	coord: 111..278 e-value: 3.9E-46 score: 157.0
IPR044876	HRDC domain superfamily	GENE3D	1.10.150.80	HRDC domain	coord: 327..434 e-value: 2.3E-21 score: 77.5
IPR002121	HRDC domain	PFAM	PF00570	HRDC	coord: 346..388 e-value: 1.8E-7 score: 31.1
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 22..315 e-value: 1.0E-82 score: 279.8
IPR045092	Exosome complex exonuclease Rrp6-like	PANTHER	PTHR12124	POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED	coord: 2..876
None	No IPR available	PANTHER	PTHR12124:SF68	PROTEIN RRP6-LIKE 3	coord: 2..876
IPR010997	HRDC-like superfamily	SUPERFAMILY	47819	HRDC-like	coord: 335..393
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 45..312

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G018970.1	CmoCh11G018970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0071040	nuclear polyadenylation-dependent antisense transcript catabolic process
biological_process	GO:0071039	nuclear polyadenylation-dependent CUT catabolic process
biological_process	GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process
biological_process	GO:0071036	nuclear polyadenylation-dependent snoRNA catabolic process
biological_process	GO:0071037	nuclear polyadenylation-dependent snRNA catabolic process
biological_process	GO:0071038	nuclear polyadenylation-dependent tRNA catabolic process
biological_process	GO:0071051	polyadenylation-dependent snoRNA 3'-end processing
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0071044	histone mRNA catabolic process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0000175	3'-5'-exoribonuclease activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0003676	nucleic acid binding