CmoCh11G018840 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G018840
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionCoiled-coil domain-containing protein 21, putative isoform 2
LocationCmo_Chr11: 13107211 .. 13111073 (-)
RNA-Seq ExpressionCmoCh11G018840
SyntenyCmoCh11G018840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGCAAAAGAGGGAACGATGAGTTTTTTGGCCGGAAGATTGGCCGGGAAGGAGGCGGCATACTTCATTCAGGAATCGAAACAAGCGGTCGGCCGCCTTGCTCAGAAGAATGCCGCCCAGAAACCACCGGCACAACCACCGTCTTCGGCCCAGAAACCACCGGACGGTGAATCTCAAGCCGACATTCTTCCAGAGGTTTTGAGGCACTCTCTGCCGTCTAAAATCTTCCGGGAGGAATCGGTGAACTCCAATGGATCCTTCTCTACTTCGAAATGGGTTCTTCCTTCTAACCCTAATTATCGGTCTGTATCTTTGGATGCTCTGAACCCTCTTAGGGCTTTTCTCTCACTTCCCCAGGTTACGTTCGGCCCCAAAAGGTTCGTTTCTGAAGTGGATTAGGGTTTAAGCTTTGATTGAATGAACTGGATTTATTTGCTTTCTTTGTTGTGGATATTGAGAAGGAATTTGGTTTCTGGGACTCTGTATAGCCATTTGCTTTGAATTGAACATACAGTAGGTGGCGCTGGATTCATCTTTTGTTGTCTGATTCCTGGTTTGTCTAATAGGTAGTGCGTTTTGAGTTGTGTTATTGACATTGGGATCTCACAATCTACTCCCTTCGGGGCTCAACATCCTCGTTGGCATTCGTTCCCTTCTCCAATCGATGTGGGATCCCTCAATCTACCCTCCTTTGGGGCTCAATGTCCTTGCTGACACACCGCCTCGTGTCCACTCCCCCTTCAGAGCGAACATCGCTCGGTGTCTGGATTTCTAGCTCTGATACCATTTGTAACAGCACAATCTCACTGCTAGCAAATATTGTCCTCTTTGAGCTTTTCCTTTCAGGTTTCCCTTTATTGTTTTAAAACATGTCTACTAGGGAGAGATTTTCATGCCCTTGTACAAAATGTTTCGTTCTCTTTCCTAACCAATGTGGGATCTCACCATTCACCCCCCTTCGGGACCTAGCGTCCTTGGTGGTACTCGTTCCCTTCTCCAATTGATGTGGGACCCCCCAATCCACCCCCTTTGGGGCCCAACGTCCTCACTGGCACACCGACTTATGCCCACTCCTATTTGGGGTTCAGCCTCTTCGTTGGCACACCGCCTCATGTCCATTTGTAATAGCTCAAGCCCACCGCTAGCAAATAGTGTCCTCTTTGGGCTTTCTTCCAAAGTTTTAAAACGCGTCTGCTAGGAAGACGTTTCCACACCCTTATAAAGGATGCATCGTTCTCTTCCCCAACCGATATGAGATCTCACCGTTTATAACACTTTCTACGGAGTGTTGTTCCATCCTTATTTGTGGACAAGTAAAGAAGGCCTCCTCCCATTTGGCTGGTGGCTTTTATGGCTTGAGGAACATAGGAGAGTTTTGGTGGCTGTGGGACACAACTAAGTTCAATACTTCCCTGTGTCCTTATCTAACATAAGTTAGATAACAACAACCTTTTTCTCTTATCTTCAGGTGGGAATTGCCTCAATACGAAAACTCAGTAGTGGCCTCAACAGCCAACGACTTAAGAACCGACAAGCACACCTCTATTAATCCTAAGAAGTTGAAGGCTGCTGCTGAAGGCCTTACAAATGGTAACCCTCCAAATGAAACAACTCTGTTTCTCTATCCCTCATCCTAATCAGCAGAGCTTTGGTTTCCCATGTAGTTGGAAAGGCATTTGGTGTATCTACTGCGCTTGTCTTTGGTGGCTCCACCTTCATCTTTGGGTTCACCATGTCCAAGCTAGACCTCAACAATGTAAACATGGATTCAACCTCTTATCTCTTCATAATCTTTGTATATGCACATATATTTCCGTTAAACTCGGGTCGTGGAAACGTCGTTTTCGCAGGCCGATGAGATTCAACAAAAAGGAAGAAGCATGTTTGAACCAAAGATAGAGATGGTTAGAGAGCAACTAGCTCCCCTCAAAGTCTGGGTATGTCATTATCATTTGTGATCCACACAGCATTCTCCCCTGTTGCGTGTTCGTTATCTAACCAGGGTTGTTTTTCGAGTTCTAGGCTGATGATATGTCGAAGAAATGGCGTGTTGAGAGAAATGGCGATATGAAAGAGAAGCCTCTCATAAAGGAACTATCAAAGATTTTGGGTTCTAAGACTCCCAACTGAACTGTATAATTTTTCTTGACCTTCTGTTGTTTATCTTGTATGTCTGTAAATGATAAGTGTAGAATGCTACTGCTTGCTAGCTAAGTTTATATAGAAGTTCCATGTTGATTTTATGCCTGAGGTTGAAAATATAAGACGTTCCAAGTTCTTGTCTGCAGCCCGATACACCGCCCAAACCCACTCTTAGCGGATATTGTCCTCTTTGTCTTTCCCTTTCGGGCTTCCCCTTAAGATTTTAAAACACGCTTTCTCACATCACAATCCACCCCATTTGGGTCTCGCTGGGACACTACTAGGTCTCTGGCTCTAATGCCATTTGTCGCGCTCCAAGCAGACAGCTAGCATATATTGTTCTCTTTGTATTTTTCCTTTTGGACTTCCCCTCATGGGTTTACAACACGAGTATCAGGGAGAGGTTTCCACATCCTTGTAAAGAATACTTCGTTCCCCTCTCCACTAGAAGTAATGTAATCGAGCAGAAGGGTTACCTGGGTTCGAGAAGAGGTGAGTTGGGCTTTCATATGAGCTTGAATTCTTGGGTTATGGGGGCTCGCCCACTCTTGGTCTATGAAACAACGATCTTCCTTTTGGGGTTCGCAGGCCGAAGACTGTGCGGTCTGAGATGAACAGAGAACATGGCTGTGGAATTGGAAGATGGTCTATTAATTAAACTTTCAATTTTATAATTATAATCTTTTAATTTTGTGTAATTTTAAAAAATATTTAATAAATACAAATTTATTAGACGAGTGATAATTATTTATTATTTATTTTTTATTTTTAAAATTAATTCTATAAACACATTATTTTAAAACTAAAAACAATAGTTTATTTTTAGAATTTGGCAATATAGTAATTTTAAGAAAAAAAAAATGATTTCTAGAAATAATTTGGAAACTGGTAGTCCCGGTTTCCGGTAAAAACTTCCCGCCACTGACGTGGAAAAGCTGAGCCATTCTGTCGAATTGGATAAACCTTCGCTCGAGGGTTTTAGGGATTGCTTCGACCCTGTAACTTGGATCGTCTTCATTTCTTCAAATTCGCAGGTAATTATCCAAATTTTCTCTATGTTTCTGATTACACCAGCGTAATTTTACCTGCGTTGGTAATCTAGCAATTGATGGAGTTGGAGTATGTTCCATTAATGGATAAAGTTTCCCGTTTCTCCGGGTGGAGGATTTTATCCATCTGAATTTATTTTTCTTTTTCTTTTTCTGTGCCGGTTCAGTTTGATATTGCTTCTTTTATGCATTCTTTAGCCTCTCTATGGTTTTGGTTTGGGGGAATCGTAGGAGAAGGAGAATTTTCGGTGATGGGAAATAGCCATTTCTGCTTACTTGAGCTTGAACTTGTGTGGTTATTTTAGTGGAGTCTGATGCAACTGAAGAAATTTCCGGTGGGAAAATTTGTTCATCAATGCACTGATTCATCTAAAAACATGCCTCTCTATGATTGTGACTGCCTTTCTTAAACCTGCTTATTGGAGATTTGTTATTTTACCTATCAATAATGAAAGTTTCGTGGGTCTGGAATGACACCATAAAGGCTCAATTAGATGTTAGAAATTCTGTATGAATACCCAGAAATAGAACAGAGAAAATCCACGAAGACTGAGAGAGCCCAAGTGCAAACGAGCTGACAAATTAAGTAAATAGTTAAGGTTGTGGAGTAATTATGGTAGCATCTATATGTGGAACATTTTAACACCTCAAAATTTGTATTGATCCTTGCAGA

mRNA sequence

ACGCAAAAGAGGGAACGATGAGTTTTTTGGCCGGAAGATTGGCCGGGAAGGAGGCGGCATACTTCATTCAGGAATCGAAACAAGCGGTCGGCCGCCTTGCTCAGAAGAATGCCGCCCAGAAACCACCGGCACAACCACCGTCTTCGGCCCAGAAACCACCGGACGGTGAATCTCAAGCCGACATTCTTCCAGAGGTTTTGAGGCACTCTCTGCCGTCTAAAATCTTCCGGGAGGAATCGGTGAACTCCAATGGATCCTTCTCTACTTCGAAATGGGTTCTTCCTTCTAACCCTAATTATCGGTCTGTATCTTTGGATGCTCTGAACCCTCTTAGGGCTTTTCTCTCACTTCCCCAGGTTACGTTCGGCCCCAAAAGGTGGGAATTGCCTCAATACGAAAACTCAGTAGTGGCCTCAACAGCCAACGACTTAAGAACCGACAAGCACACCTCTATTAATCCTAAGAAGTTGAAGGCTGCTGCTGAAGGCCTTACAAATGTTGGAAAGGCATTTGGTGTATCTACTGCGCTTGTCTTTGGTGGCTCCACCTTCATCTTTGGGTTCACCATGTCCAAGCTAGACCTCAACAATGCCGATGAGATTCAACAAAAAGGAAGAAGCATGTTTGAACCAAAGATAGAGATGGTTAGAGAGCAACTAGCTCCCCTCAAAGTCTGGGCTGATGATATGTCGAAGAAATGGCGTGTTGAGAGAAATGGCGATATGAAAGAGAAGCCTCTCATAAAGGAACTATCAAAGATTTTGGGAGAAGGAGAATTTTCGGTGATGGGAAATAGCCATTTCTGCTTACTTGAGCTTGAACTTGTGTGA

Coding sequence (CDS)

ATGAGTTTTTTGGCCGGAAGATTGGCCGGGAAGGAGGCGGCATACTTCATTCAGGAATCGAAACAAGCGGTCGGCCGCCTTGCTCAGAAGAATGCCGCCCAGAAACCACCGGCACAACCACCGTCTTCGGCCCAGAAACCACCGGACGGTGAATCTCAAGCCGACATTCTTCCAGAGGTTTTGAGGCACTCTCTGCCGTCTAAAATCTTCCGGGAGGAATCGGTGAACTCCAATGGATCCTTCTCTACTTCGAAATGGGTTCTTCCTTCTAACCCTAATTATCGGTCTGTATCTTTGGATGCTCTGAACCCTCTTAGGGCTTTTCTCTCACTTCCCCAGGTTACGTTCGGCCCCAAAAGGTGGGAATTGCCTCAATACGAAAACTCAGTAGTGGCCTCAACAGCCAACGACTTAAGAACCGACAAGCACACCTCTATTAATCCTAAGAAGTTGAAGGCTGCTGCTGAAGGCCTTACAAATGTTGGAAAGGCATTTGGTGTATCTACTGCGCTTGTCTTTGGTGGCTCCACCTTCATCTTTGGGTTCACCATGTCCAAGCTAGACCTCAACAATGCCGATGAGATTCAACAAAAAGGAAGAAGCATGTTTGAACCAAAGATAGAGATGGTTAGAGAGCAACTAGCTCCCCTCAAAGTCTGGGCTGATGATATGTCGAAGAAATGGCGTGTTGAGAGAAATGGCGATATGAAAGAGAAGCCTCTCATAAAGGAACTATCAAAGATTTTGGGAGAAGGAGAATTTTCGGTGATGGGAAATAGCCATTTCTGCTTACTTGAGCTTGAACTTGTGTGA

Protein sequence

MSFLAGRLAGKEAAYFIQESKQAVGRLAQKNAAQKPPAQPPSSAQKPPDGESQADILPEVLRHSLPSKIFREESVNSNGSFSTSKWVLPSNPNYRSVSLDALNPLRAFLSLPQVTFGPKRWELPQYENSVVASTANDLRTDKHTSINPKKLKAAAEGLTNVGKAFGVSTALVFGGSTFIFGFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKPLIKELSKILGEGEFSVMGNSHFCLLELELV
Homology
BLAST of CmoCh11G018840 vs. ExPASy TrEMBL
Match: A0A6J1ERF2 (uncharacterized protein LOC111437124 OS=Cucurbita moschata OX=3662 GN=LOC111437124 PE=4 SV=1)

HSP 1 Score: 487.3 bits (1253), Expect = 4.2e-134
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0

Query: 1   MSFLAGRLAGKEAAYFIQESKQAVGRLAQKNAAQKPPAQPPSSAQKPPDGESQADILPEV 60
           MSFLAGRLAGKEAAYFIQESKQAVGRLAQKNAAQKPPAQPPSSAQKPPDGESQADILPEV
Sbjct: 1   MSFLAGRLAGKEAAYFIQESKQAVGRLAQKNAAQKPPAQPPSSAQKPPDGESQADILPEV 60

Query: 61  LRHSLPSKIFREESVNSNGSFSTSKWVLPSNPNYRSVSLDALNPLRAFLSLPQVTFGPKR 120
           LRHSLPSKIFREESVNSNGSFSTSKWVLPSNPNYRSVSLDALNPLRAFLSLPQVTFGPKR
Sbjct: 61  LRHSLPSKIFREESVNSNGSFSTSKWVLPSNPNYRSVSLDALNPLRAFLSLPQVTFGPKR 120

Query: 121 WELPQYENSVVASTANDLRTDKHTSINPKKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 180
           WELPQYENSVVASTANDLRTDKHTSINPKKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF
Sbjct: 121 WELPQYENSVVASTANDLRTDKHTSINPKKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 180

Query: 181 GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 240
           GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP
Sbjct: 181 GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 240

Query: 241 LIKELSKILG 251
           LIKELSKILG
Sbjct: 241 LIKELSKILG 250

BLAST of CmoCh11G018840 vs. ExPASy TrEMBL
Match: A0A6J1JKW8 (uncharacterized protein LOC111486122 OS=Cucurbita maxima OX=3661 GN=LOC111486122 PE=4 SV=1)

HSP 1 Score: 455.3 bits (1170), Expect = 1.8e-124
Identity = 237/250 (94.80%), Postives = 241/250 (96.40%), Query Frame = 0

Query: 1   MSFLAGRLAGKEAAYFIQESKQAVGRLAQKNAAQKPPAQPPSSAQKPPDGESQADILPEV 60
           MSFLAGRLAGKEAAYFIQESKQAVGRLAQKNAAQK    PPSSAQKPPDGESQADILPEV
Sbjct: 1   MSFLAGRLAGKEAAYFIQESKQAVGRLAQKNAAQK----PPSSAQKPPDGESQADILPEV 60

Query: 61  LRHSLPSKIFREESVNSNGSFSTSKWVLPSNPNYRSVSLDALNPLRAFLSLPQVTFGPKR 120
           LRHSLPSKIFREESVNSNGSFSTSKWVLPSNPNYRSVSLDALNPLRAFLSLPQVTFGPKR
Sbjct: 61  LRHSLPSKIFREESVNSNGSFSTSKWVLPSNPNYRSVSLDALNPLRAFLSLPQVTFGPKR 120

Query: 121 WELPQYENSVVASTANDLRTDKHTSINPKKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 180
           WELPQYENSVVASTANDLRTDK TSINP+KLKAAAEGLTNVGKAFGV+TA VFGGST IF
Sbjct: 121 WELPQYENSVVASTANDLRTDKLTSINPEKLKAAAEGLTNVGKAFGVATAFVFGGSTLIF 180

Query: 181 GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 240
           GFTMSKLDLNNA+EIQQKGRSM EPKIEMVREQLAPLKVWADDMSKKW VERNGD+KEKP
Sbjct: 181 GFTMSKLDLNNANEIQQKGRSMIEPKIEMVREQLAPLKVWADDMSKKWHVERNGDIKEKP 240

Query: 241 LIKELSKILG 251
           LIKELSKILG
Sbjct: 241 LIKELSKILG 246

BLAST of CmoCh11G018840 vs. ExPASy TrEMBL
Match: A0A1S3C0Z0 (uncharacterized protein LOC103495622 OS=Cucumis melo OX=3656 GN=LOC103495622 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 2.1e-109
Identity = 206/250 (82.40%), Postives = 225/250 (90.00%), Query Frame = 0

Query: 1   MSFLAGRLAGKEAAYFIQESKQAVGRLAQKNAAQKPPAQPPSSAQKPPDGESQADILPEV 60
           MSFLAGRLAGKEAAYFIQESK AVGRLAQKN AQK PA+ P S+    DGE QADILPEV
Sbjct: 1   MSFLAGRLAGKEAAYFIQESKHAVGRLAQKNTAQKFPAKSPPSSHSLADGEPQADILPEV 60

Query: 61  LRHSLPSKIFREESVNSNGSFSTSKWVLPSNPNYRSVSLDALNPLRAFLSLPQVTFGPKR 120
           LRHSLPSKIFREES NS+GSFSTSKWVLPS+PNYRSVS DALNPLRAFLSLPQVTFGPKR
Sbjct: 61  LRHSLPSKIFREESANSSGSFSTSKWVLPSDPNYRSVSSDALNPLRAFLSLPQVTFGPKR 120

Query: 121 WELPQYENSVVASTANDLRTDKHTSINPKKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 180
           WELPQ ENS++ASTANDLRTDKHT +NP+KLKAAAEGL +VGKAF V+TALVFGG+T IF
Sbjct: 121 WELPQSENSILASTANDLRTDKHTPMNPEKLKAAAEGLAHVGKAFAVATALVFGGATLIF 180

Query: 181 GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 240
           GFTMSKLD+NNA EIQ KG+SM EPK+EM+R+Q  P KVWADD+SKKW VER+ D+KEKP
Sbjct: 181 GFTMSKLDVNNASEIQTKGKSMIEPKMEMIRQQFVPFKVWADDVSKKWHVERDNDIKEKP 240

Query: 241 LIKELSKILG 251
           LIKELSKILG
Sbjct: 241 LIKELSKILG 250

BLAST of CmoCh11G018840 vs. ExPASy TrEMBL
Match: A0A0A0K240 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041920 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 4.4e-107
Identity = 202/250 (80.80%), Postives = 221/250 (88.40%), Query Frame = 0

Query: 1   MSFLAGRLAGKEAAYFIQESKQAVGRLAQKNAAQKPPAQPPSSAQKPPDGESQADILPEV 60
           MSFLAGRLAGKEAAYFIQESK AVGRLAQKN A K PAQ P S+   P GE QADILPEV
Sbjct: 1   MSFLAGRLAGKEAAYFIQESKHAVGRLAQKNTAHKFPAQSPPSSHSLPHGEPQADILPEV 60

Query: 61  LRHSLPSKIFREESVNSNGSFSTSKWVLPSNPNYRSVSLDALNPLRAFLSLPQVTFGPKR 120
           LRHSLPS IFREES NS+GSFSTSKWVLPS+PNYRSVS ++LNPLR FLSLPQVTFGPKR
Sbjct: 61  LRHSLPSTIFREESANSSGSFSTSKWVLPSDPNYRSVSSNSLNPLRDFLSLPQVTFGPKR 120

Query: 121 WELPQYENSVVASTANDLRTDKHTSINPKKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 180
           WELPQ ENS++ASTANDLRTDKHT INP+KLKAAAEGL +VGKAF  +TALVFGG+T IF
Sbjct: 121 WELPQSENSILASTANDLRTDKHTPINPEKLKAAAEGLAHVGKAFAAATALVFGGATLIF 180

Query: 181 GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 240
           GFT+SKLD+NNA EIQ KG+ M EPK+EM+R+QL P KVWADDMSKKW VER+ D+KEKP
Sbjct: 181 GFTLSKLDVNNASEIQTKGKGMIEPKMEMIRQQLVPFKVWADDMSKKWHVERDNDIKEKP 240

Query: 241 LIKELSKILG 251
           LIKELSKILG
Sbjct: 241 LIKELSKILG 250

BLAST of CmoCh11G018840 vs. ExPASy TrEMBL
Match: A0A6J1C1Z9 (uncharacterized protein LOC111007726 OS=Momordica charantia OX=3673 GN=LOC111007726 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.7e-106
Identity = 199/250 (79.60%), Postives = 222/250 (88.80%), Query Frame = 0

Query: 1   MSFLAGRLAGKEAAYFIQESKQAVGRLAQKNAAQKPPAQPPSSAQKPPDGESQADILPEV 60
           MSFLAGRLAGKEAAYFIQESK A+GRL QKN  QK PAQPP S+  P DGE QADILPEV
Sbjct: 1   MSFLAGRLAGKEAAYFIQESKHAIGRLVQKNTTQKFPAQPPPSSHSPADGELQADILPEV 60

Query: 61  LRHSLPSKIFREESVNSNGSFSTSKWVLPSNPNYRSVSLDALNPLRAFLSLPQVTFGPKR 120
           LRHSLPSKIFRE+S +SNGS  TSKWVLPS+PN RSVS DALNPLRAFL+LPQVTFGPKR
Sbjct: 61  LRHSLPSKIFREQSADSNGSLVTSKWVLPSDPNRRSVSSDALNPLRAFLTLPQVTFGPKR 120

Query: 121 WELPQYENSVVASTANDLRTDKHTSINPKKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 180
           WELPQ ENSV+ASTANDLR DKHT+INP+KLKAAAEGL +VGKAF ++TALVFGG+T IF
Sbjct: 121 WELPQSENSVLASTANDLRADKHTTINPEKLKAAAEGLAHVGKAFAIATALVFGGATLIF 180

Query: 181 GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 240
           GFT+SKLDLNN++EIQ KGR++ EPK+EM+REQL P K WA+DMSKKW VER+ D+KEKP
Sbjct: 181 GFTVSKLDLNNSNEIQTKGRNLIEPKMEMIREQLVPFKTWAEDMSKKWHVERDKDIKEKP 240

Query: 241 LIKELSKILG 251
           LIKELSK LG
Sbjct: 241 LIKELSKTLG 250

BLAST of CmoCh11G018840 vs. TAIR 10
Match: AT1G05060.1 (unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 272.7 bits (696), Expect = 3.2e-73
Identity = 150/258 (58.14%), Postives = 195/258 (75.58%), Query Frame = 0

Query: 1   MSFL-AGRLAGKEAAYFIQESKQAVGRLAQKNAA--QKPPAQPPSSAQKPPDGESQADIL 60
           MSFL AGRLAGKEAAYF QESK AV RLA+K+ A  +K P+ PP     PP  E Q D+L
Sbjct: 1   MSFLGAGRLAGKEAAYFFQESKHAVNRLAEKSPATGKKLPSSPPD----PP--EIQPDVL 60

Query: 61  PEVLRHSLPSKIF-REESVNSNGSFSTSKWVLPSNPNYR-SVSLDALNPLRAFLSLPQVT 120
           PE+LRHSLPSKI+ R    +S   F  SKW L S+PN   S+S D LNPLR ++SLPQVT
Sbjct: 61  PEILRHSLPSKIYGRPPDPSSLSQF--SKWALESDPNATVSISPDVLNPLRGYVSLPQVT 120

Query: 121 FGPKRWELPQYENSVVASTANDLRTDKH-TSINPKKLKAAAEGLTNVGKAFGVSTALVFG 180
           FG +RW+LP+ ENSV+ASTAN+LR D++ T +NP+KLKAA EGL ++GKAF  +T ++FG
Sbjct: 121 FGRRRWDLPESENSVLASTANELRRDRYGTPVNPEKLKAAGEGLQHIGKAFAAATIIIFG 180

Query: 181 GSTFIFGFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNG 240
            +T +FG   SKLD+ NAD+I+ KG+ +F+PK+E ++EQ+ PL+ WA++MSKKW +E  G
Sbjct: 181 SATLVFGTAASKLDMRNADDIRTKGKDLFQPKLESMKEQVEPLRTWAENMSKKWHIENEG 240

Query: 241 --DMKEKPLIKELSKILG 251
              +KEKP++KELSKILG
Sbjct: 241 GNTIKEKPILKELSKILG 250

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1ERF24.2e-134100.00uncharacterized protein LOC111437124 OS=Cucurbita moschata OX=3662 GN=LOC1114371... [more]
A0A6J1JKW81.8e-12494.80uncharacterized protein LOC111486122 OS=Cucurbita maxima OX=3661 GN=LOC111486122... [more]
A0A1S3C0Z02.1e-10982.40uncharacterized protein LOC103495622 OS=Cucumis melo OX=3656 GN=LOC103495622 PE=... [more]
A0A0A0K2404.4e-10780.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041920 PE=4 SV=1[more]
A0A6J1C1Z91.7e-10679.60uncharacterized protein LOC111007726 OS=Momordica charantia OX=3673 GN=LOC111007... [more]
Match NameE-valueIdentityDescription
AT1G05060.13.2e-7358.14unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..49
NoneNo IPR availablePANTHERPTHR36704:SF1PROTEIN, PUTATIVE-RELATEDcoord: 1..251
NoneNo IPR availablePANTHERPTHR36704PROTEIN, PUTATIVE-RELATEDcoord: 1..251

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G018840.1CmoCh11G018840.1mRNA