CmoCh11G018810 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G018810
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionchromatin remodeling protein EBS-like
LocationCmo_Chr11: 13101521 .. 13104156 (+)
RNA-Seq ExpressionCmoCh11G018810
SyntenyCmoCh11G018810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTAATCTTCTGTAGCGTTGCGACTCGAACAGTATCTTAGATTATTAGCGGGGTTAATTCATGGCCAAGACTAAACCAGGGAAGAAAGATCTTGATTCATACACCATCAAAGGCACCAACAAAATTGTTCGACGTATTGTCTCTTTGGGAACAAACATGATTTTTGTTCTTCCTCTTGTTCTTCGTCTTCTTCTTTTGTTTTTGTGTTCAAAGCGACGCTTAATTGGTTTGCATTTTCTGCAATTGCTTTTGGTTGCTTCTGGTGAGTGTTCATTGATTTTTGGAATTGCATTTCTGTGGTTGTTGCAGCTGGTGATTGTGTGTTAATGCGACCGTCCGACTCCGATAAGCCTCCATACGTTGCTCGCGTTGAGAAAATTGAAGCTGATCATCGCAACAATGTGAAGGTTCGGGTTCGGTGGTATTATCGGCCGGAAGAATCAATTGGAGGACGAAGGCAGTTCCATGGTGCTAAAGAGCTTTTTCTCTCGGACCATTTTGATGTTCAGAGTGCTCACACTATAGAGGGAAAATGCACGGTGCACTCTTTTAAAAATTATACCAAACTTGATAATGTTGGTGCAGAGGACTACTTTTGCAGATTCGAGTACAAGGCTGCCACTGGCGGTTTCACACCAGACCGTGTAGCTGTGTGAGTTCTATGGTGTACCTTGTTCCTTACATGTTTCTACTAAAGCAATCTCATGTTGGTAATTATATAAGAAAATTTGTGGTTTATCTGTGTTTTGGGTTCTTTTTTTTAATTGCAGGTATTGTAAATGTGAGATGCCATACAACCCAGATGACCTTATGGTTCAGTGTGAGGGATGCAAAGATTGGTAATCTCAACCTACTTTTGCAGCTATGTGCTTTGTTTCCTTGGGTGCAAATTTAGGGAGGATAATCTGATGCTTGCTTGTTTTATAACTTCGTTATGTAGCTTTTGTTTGGAGATAGTGTCGTGTTGTTCACCCGTTGCAGGCTATTATATGTCGGTTTTTCTTGGAATTTTAAAGATAGGCACTCTGTTCAATAACTTGTTGTGCCATTGTTAGGGTGATGCACCAAAATGTGAACAAGAATGTGGAGATGGAAAGCCTTGTTTTCTCGTCCTCTCTAAACTAACATATATGTTTTGCAGGTTTCATCCATCATGCATGGGAATGACCATTGACGAAGCAAAGAAGTTGGATAACTTTTTGTGTTCAGATTGTTCCTCAGAAAATGATGCGAAAAGGTCCTCGAATGCATTTCCAGTATCACCTTCTGCTGAGGCTAAGGTAAGGGATGTTGATTCATCTTTACATGAGAGAAATACTGCTAAAATCGTATGACTTATGTTAAAATGTAGAGGAGCTGCAGAATTACTTGAGAACATTATGTGCCTCTTCTGGTCAAACCATTAGAAATTCAATAACTGGTATGCCTATAAGCAAAGTGATGATGTTGGCAAGAAATGCCAATAAAAGAAATCTAACATTTATGCTTTTGCTAAATTTTATTATCATGGAGATTTTTTGTGTAGACTACTGAATTCTCGTTATGTGCTGCTAGGCTGAAGTTTGAAGTCCTATTAGGGTAATTCTTGTATGCATTCTGTGAGATCCCACATCAATTGGAGAGAAGCATTCTTTTAAGGATGTGGAAACCTATCCCTAGCAGATGCGTTTAAAAACTTTGAGGGAGCCCAAAAAGGAAAACCCAAAGAGGACAATATTTGCTAATGGTGGGTTTGGGCCGTAACACATTCTATGAAACTTGCTTTGGGAAACTCATTGCATAATATAGGTCTTGAACACAATTTGGTTTAGGTTGATTGATAACTTCATTTTAGTTGGTACTCCTTTGTCTCTAACTGGATAGTGGTACTGTATTTATGCTTATTTGGTTAGGTTGCAATCAATAAAATATGAAATGACACATAATTGAAGTTGATTAATTGATGTGCACTAGAAGGCACATTCAAACCTTTTGTTTTGCCTAGGAATACTCTTCCCTCCCGGACTGCCCTTTGTGCACGAGTAGTTCACATTTGGTGCTACATTTTCTTCTTGATGACTTTGGTTGTATTGGAGCTCTAAAGTTTGTCGTTTTTAAGCAACTCTGAGTCGACTATTGGAGCTCTAAAGTTACCATGTTGTTTCAAGTTTTTAAGCAACTCTTGACGACTTCGTTTTAAGTTTCTCTGAGTCGACTATTGGAACTCTGAGTCAACTCTGTGTTGAACATAGTGTAGTATTAGTGAACAACTGATTTGGGACAATCCCCAATGTTTGGTGTAAAAGGGTCAGAGGCAGTGTAACACACTGAATTTCTGTCTCGTGCTCTCTGGTTTTTATTTATTGTGAAAGGATTTAGGCAATGAAACAGAAATATGGATTCTCATGTTGAATTCTCATGCTAGGTGGAACCAAAGCGTCGGAAGAGATGATTGGCTGATGAAGGTTCATGGAAGTGACAAGGAGGTGCGATTTCCTGCGCCTTTAGTTTCTGTTAATGTCGATGTTGTGGAAATGTACAGTGAAGATAAGATATTGTGCTCGCACAAACCAGAGGTTCTTTTTTTTAAAACTACAATGTTCAAATACATTTACGTGTGCTAA

mRNA sequence

TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTAATCTTCTGTAGCGTTGCGACTCGAACAGTATCTTAGATTATTAGCGGGGTTAATTCATGGCCAAGACTAAACCAGGGAAGAAAGATCTTGATTCATACACCATCAAAGGCACCAACAAAATTGTTCGACCTGGTGATTGTGTGTTAATGCGACCGTCCGACTCCGATAAGCCTCCATACGTTGCTCGCGTTGAGAAAATTGAAGCTGATCATCGCAACAATGTGAAGGTTCGGGTTCGGTGGTATTATCGGCCGGAAGAATCAATTGGAGGACGAAGGCAGTTCCATGGTGCTAAAGAGCTTTTTCTCTCGGACCATTTTGATGTTCAGAGTGCTCACACTATAGAGGGAAAATGCACGGTGCACTCTTTTAAAAATTATACCAAACTTGATAATGTTGGTGCAGAGGACTACTTTTGCAGATTCGAGTACAAGGCTGCCACTGGCGGTTTCACACCAGACCGTGTAGCTGTGTATTGTAAATGTGAGATGCCATACAACCCAGATGACCTTATGGTTCAGTGTGAGGGATGCAAAGATTGGTTTCATCCATCATGCATGGGAATGACCATTGACGAAGCAAAGAAGTTGGATAACTTTTTGTGTTCAGATTGTTCCTCAGAAAATGATGCGAAAAGGTCCTCGAATGCATTTCCAGTATCACCTTCTGCTGAGGCTAAGACTACTGAATTCTCGTTATGTGCTGCTAGGCTGAAGTTTGAAGTCCTATTAGGGTGGAACCAAAGCGTCGGAAGAGATGATTGGCTGATGAAGGTTCATGGAAGTGACAAGGAGGTGCGATTTCCTGCGCCTTTAGTTTCTGTTAATGTCGATGTTGTGGAAATGTACAGTGAAGATAAGATATTGTGCTCGCACAAACCAGAGGTTCTTTTTTTTAAAACTACAATGTTCAAATACATTTACGTGTGCTAA

Coding sequence (CDS)

ATGGCCAAGACTAAACCAGGGAAGAAAGATCTTGATTCATACACCATCAAAGGCACCAACAAAATTGTTCGACCTGGTGATTGTGTGTTAATGCGACCGTCCGACTCCGATAAGCCTCCATACGTTGCTCGCGTTGAGAAAATTGAAGCTGATCATCGCAACAATGTGAAGGTTCGGGTTCGGTGGTATTATCGGCCGGAAGAATCAATTGGAGGACGAAGGCAGTTCCATGGTGCTAAAGAGCTTTTTCTCTCGGACCATTTTGATGTTCAGAGTGCTCACACTATAGAGGGAAAATGCACGGTGCACTCTTTTAAAAATTATACCAAACTTGATAATGTTGGTGCAGAGGACTACTTTTGCAGATTCGAGTACAAGGCTGCCACTGGCGGTTTCACACCAGACCGTGTAGCTGTGTATTGTAAATGTGAGATGCCATACAACCCAGATGACCTTATGGTTCAGTGTGAGGGATGCAAAGATTGGTTTCATCCATCATGCATGGGAATGACCATTGACGAAGCAAAGAAGTTGGATAACTTTTTGTGTTCAGATTGTTCCTCAGAAAATGATGCGAAAAGGTCCTCGAATGCATTTCCAGTATCACCTTCTGCTGAGGCTAAGACTACTGAATTCTCGTTATGTGCTGCTAGGCTGAAGTTTGAAGTCCTATTAGGGTGGAACCAAAGCGTCGGAAGAGATGATTGGCTGATGAAGGTTCATGGAAGTGACAAGGAGGTGCGATTTCCTGCGCCTTTAGTTTCTGTTAATGTCGATGTTGTGGAAATGTACAGTGAAGATAAGATATTGTGCTCGCACAAACCAGAGGTTCTTTTTTTTAAAACTACAATGTTCAAATACATTTACGTGTGCTAA

Protein sequence

MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSENDAKRSSNAFPVSPSAEAKTTEFSLCAARLKFEVLLGWNQSVGRDDWLMKVHGSDKEVRFPAPLVSVNVDVVEMYSEDKILCSHKPEVLFFKTTMFKYIYVC
Homology
BLAST of CmoCh11G018810 vs. ExPASy Swiss-Prot
Match: F4JL28 (Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 4.0e-103
Identity = 168/207 (81.16%), Postives = 191/207 (92.27%), Query Frame = 0

Query: 2   AKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVR 61
           +K K G+K+LDSYTIKGTNK+VR GDCVLMRPSD+ KPPYVARVEKIEAD RNNVKV  R
Sbjct: 10  SKIKTGRKELDSYTIKGTNKVVRAGDCVLMRPSDAGKPPYVARVEKIEADARNNVKVHCR 69

Query: 62  WYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFC 121
           WYYRPEES+GGRRQFHGAKELFLSDHFDVQSAHTIEGKC VH+FKNYT+L+NVGAEDY+C
Sbjct: 70  WYYRPEESLGGRRQFHGAKELFLSDHFDVQSAHTIEGKCIVHTFKNYTRLENVGAEDYYC 129

Query: 122 RFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNF 181
           RFEYKAATG FTPDRVAVYCKCEMPYNPDDLMVQCEGCKDW+HP+C+GMTI+EAKKLD+F
Sbjct: 130 RFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHF 189

Query: 182 LCSDCSSENDAKRSSNAFPVSPSAEAK 209
           +C++CSS++D K+S N F  SP+ + K
Sbjct: 190 VCAECSSDDDVKKSQNGFTSSPADDVK 216

BLAST of CmoCh11G018810 vs. ExPASy Swiss-Prot
Match: Q9FEN9 (Chromatin remodeling protein SHL OS=Arabidopsis thaliana OX=3702 GN=SHL PE=1 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.3e-77
Identity = 135/199 (67.84%), Postives = 156/199 (78.39%), Query Frame = 0

Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHR-NNVKVR 60
           M K K  +K L SY +K  NK ++ GD VLMR S+  KP YVARVE IE D R ++ KVR
Sbjct: 1   MPKQKAPRKQLKSYKLKHINKSIQEGDAVLMRSSEPGKPSYVARVEAIETDARGSHAKVR 60

Query: 61  VRWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDY 120
           VRWYYRPEESIGGRRQFHGAKE+FLSDHFD QSA TIEGKC VHSF +YTKLD+VG +D+
Sbjct: 61  VRWYYRPEESIGGRRQFHGAKEVFLSDHFDFQSADTIEGKCKVHSFSSYTKLDSVGNDDF 120

Query: 121 FCRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLD 180
           FCRFEY + TG F PDRV V+CKCEMPYNPDDLMVQCE C +WFHPSC+G TI+EAKK D
Sbjct: 121 FCRFEYNSTTGAFDPDRVTVFCKCEMPYNPDDLMVQCEECSEWFHPSCIGTTIEEAKKPD 180

Query: 181 NFLCSDCSSENDAKRSSNA 199
           NF C +CS +     +SN+
Sbjct: 181 NFYCEECSPQQQNLHNSNS 199

BLAST of CmoCh11G018810 vs. ExPASy Swiss-Prot
Match: F4JGB7 (Chromatin remodeling protein At4g04260 OS=Arabidopsis thaliana OX=3702 GN=At4g04260 PE=3 SV=2)

HSP 1 Score: 271.6 bits (693), Expect = 1.1e-71
Identity = 142/230 (61.74%), Postives = 167/230 (72.61%), Query Frame = 0

Query: 2   AKTKPGKKDLD--SYTIKGTNKIVR-----PGDCVLMRPSDSDKPPYVARVEKIEADHRN 61
           +K K GKKD+      I   N IV       GDCVLMRPSD+ K PYVARVEKIEAD RN
Sbjct: 12  SKIKLGKKDIKILGREILLGNVIVEVGFFTVGDCVLMRPSDAGKAPYVARVEKIEADARN 71

Query: 62  NVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNV 121
           NVKV  RWYY PEES GGRRQ HGAKELFLSDHFDVQSAHTIEGKC VH+FKNYT+L+NV
Sbjct: 72  NVKVHCRWYYCPEESHGGRRQLHGAKELFLSDHFDVQSAHTIEGKCIVHTFKNYTRLENV 131

Query: 122 GAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDE 181
           G EDY+C F+YKAATG FTPDRVAVY KCEMPYN D+LM +   C    H +C+G+TI+E
Sbjct: 132 GVEDYYCIFDYKAATGAFTPDRVAVYYKCEMPYNSDELM-ELLLCHYRVHLACVGVTIEE 191

Query: 182 AKKLDNFLCSDCSSEND-AKRSSNAFPVSPSAEAKTTEFSLCAARLKFEV 224
           AKKL++F+C +CSS+ D  KR  N F  S + + K +   +   R  +E+
Sbjct: 192 AKKLEHFVCVECSSDEDGVKRFQNGFASSTTNDLKPSAEKMIDVRASYEL 240

BLAST of CmoCh11G018810 vs. ExPASy Swiss-Prot
Match: Q9P281 (BAH and coiled-coil domain-containing protein 1 OS=Homo sapiens OX=9606 GN=BAHCC1 PE=1 SV=4)

HSP 1 Score: 65.9 bits (159), Expect = 8.9e-10
Identity = 38/125 (30.40%), Postives = 59/125 (47.20%), Query Frame = 0

Query: 23   VRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKEL 82
            +R GDC +   +     PY+ R+E +     +N+ V+V+W+Y PEE+  G+RQ  G   L
Sbjct: 2515 LRVGDCAVFLSAGRPNLPYIGRIESMWESWGSNMVVKVKWFYHPEETKLGKRQCDGKNAL 2574

Query: 83   FLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNV-----GAEDYFCRFEYKAATGGF-TPDR 142
            + S H D     TI  KC V + + Y ++          + Y+    Y   TG   T D 
Sbjct: 2575 YQSCHEDENDVQTISHKCQVVAREQYEQMARSRKCQDRQDLYYLAGTYDPTTGRLVTADG 2634

BLAST of CmoCh11G018810 vs. ExPASy Swiss-Prot
Match: Q3UHR0 (BAH and coiled-coil domain-containing protein 1 OS=Mus musculus OX=10090 GN=Bahcc1 PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 1.2e-09
Identity = 40/125 (32.00%), Postives = 59/125 (47.20%), Query Frame = 0

Query: 23   VRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKEL 82
            +R GDC +   +     PY+ R+E +     +N+ V+V+W+Y PEE+  G+RQ  G   L
Sbjct: 2519 LRIGDCAVFLSAGRPNLPYIGRIESLWESWGSNMVVKVKWFYHPEETKLGKRQSDGKNAL 2578

Query: 83   FLSDHFDVQSAHTIEGKCTVHSFKNYTKL----DNVGAED-YFCRFEYKAATGGF-TPDR 142
            + S H D     TI  KC V   + Y ++         +D Y+    Y   TG   T D 
Sbjct: 2579 YQSCHEDENDVQTISHKCQVVGREQYEQMMRGRKYQDQQDLYYLAGTYDPTTGRLVTADG 2638

BLAST of CmoCh11G018810 vs. ExPASy TrEMBL
Match: A0A5D3C9X7 (Chromatin remodeling protein EBS-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G004500 PE=4 SV=1)

HSP 1 Score: 513.1 bits (1320), Expect = 7.8e-142
Identity = 251/302 (83.11%), Postives = 265/302 (87.75%), Query Frame = 0

Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV 60
           MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV
Sbjct: 1   MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV 60

Query: 61  RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYF 120
           RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKL+NVGAEDYF
Sbjct: 61  RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLENVGAEDYF 120

Query: 121 CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDN 180
           CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTI+EAKKLD+
Sbjct: 121 CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDH 180

Query: 181 FLCSDCSSENDAKRSSNAFPVSPSAEAKTTEFSLCA---ARLKFE------VLLG----- 240
           FLCSDCSSEN+AKRS NAFPVSPSAEAK  +  L +    R+K++      +LL      
Sbjct: 181 FLCSDCSSENEAKRSLNAFPVSPSAEAKVFQDHLSSQIIVRIKYQKKRSEWILLNETDIR 240

Query: 241 ---------WNQSVGRDDWLMKVHGSDKEVRFPAPLVSVNVDVVEMYSEDKILCSHKPEV 280
                    W+QS GRDD L+++HGSDKEVRFP P VSVNVD VEMYSEDKILCSHKPEV
Sbjct: 241 ILVLNSHARWSQSAGRDDGLIRIHGSDKEVRFPGPFVSVNVD-VEMYSEDKILCSHKPEV 300

BLAST of CmoCh11G018810 vs. ExPASy TrEMBL
Match: A0A6J1JN00 (chromatin remodeling protein EBS-like OS=Cucurbita maxima OX=3661 GN=LOC111486148 PE=4 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 3.4e-121
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0

Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV 60
           MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV
Sbjct: 1   MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV 60

Query: 61  RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYF 120
           RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYF
Sbjct: 61  RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYF 120

Query: 121 CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDN 180
           CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDN
Sbjct: 121 CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDN 180

Query: 181 FLCSDCSSENDAKRSSNAFPVSPSAEAK 209
           FLCSDCSSENDAKRSSNAFPVSPSAEAK
Sbjct: 181 FLCSDCSSENDAKRSSNAFPVSPSAEAK 208

BLAST of CmoCh11G018810 vs. ExPASy TrEMBL
Match: A0A6J1ESB9 (chromatin remodeling protein EBS-like OS=Cucurbita moschata OX=3662 GN=LOC111437125 PE=4 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 3.4e-121
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0

Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV 60
           MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV
Sbjct: 1   MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV 60

Query: 61  RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYF 120
           RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYF
Sbjct: 61  RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYF 120

Query: 121 CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDN 180
           CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDN
Sbjct: 121 CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDN 180

Query: 181 FLCSDCSSENDAKRSSNAFPVSPSAEAK 209
           FLCSDCSSENDAKRSSNAFPVSPSAEAK
Sbjct: 181 FLCSDCSSENDAKRSSNAFPVSPSAEAK 208

BLAST of CmoCh11G018810 vs. ExPASy TrEMBL
Match: A0A7J6HIS8 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_018649 PE=4 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 5.4e-119
Identity = 211/273 (77.29%), Postives = 232/273 (84.98%), Query Frame = 0

Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV 60
           MAKTKPGKKDLDSYTIKGTNK+VRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV
Sbjct: 1   MAKTKPGKKDLDSYTIKGTNKVVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV 60

Query: 61  RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYF 120
           RWYYRPEESIGGRRQFHGAKELFLSDH+DVQSAHTIEGKCTVH+FKNYTKL+NVG EDYF
Sbjct: 61  RWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCTVHTFKNYTKLENVGTEDYF 120

Query: 121 CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDN 180
           CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTI+EAKKLD+
Sbjct: 121 CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDH 180

Query: 181 FLCSDCSSENDAKRSSNAFPVSPSAEAKTTEFSLCAARLKFEVLLGWNQSVGRDDWLMKV 240
           FLCSDC+S++DAKRS NAFPVSPS E K    S         V +G ++SVGRDD  +  
Sbjct: 181 FLCSDCNSDDDAKRSLNAFPVSPSVETKVRTHS----PEHLFVFVGLSRSVGRDDLFI-- 240

Query: 241 HGSDKE----VRFPAPLVSVNVDVVEMYSEDKI 270
            G  KE    +     L+ +N  +++M++   I
Sbjct: 241 -GCSKEYLVSLALAPALLKLNSPLLDMFTSQAI 266

BLAST of CmoCh11G018810 vs. ExPASy TrEMBL
Match: A0A6J1C3E6 (chromatin remodeling protein EBS-like OS=Momordica charantia OX=3673 GN=LOC111007999 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.6e-118
Identity = 203/208 (97.60%), Postives = 207/208 (99.52%), Query Frame = 0

Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV 60
           MAKTKPGKKDLDSYTIKGTNKIVRPG+CVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV
Sbjct: 1   MAKTKPGKKDLDSYTIKGTNKIVRPGECVLMRPSDSDKPPYVARVEKIEADHRNNVKVRV 60

Query: 61  RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYF 120
           RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKL+NVGAEDYF
Sbjct: 61  RWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLENVGAEDYF 120

Query: 121 CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDN 180
           CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTI+EAKKLD+
Sbjct: 121 CRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDH 180

Query: 181 FLCSDCSSENDAKRSSNAFPVSPSAEAK 209
           FLCSDCSSENDAKRS NAFPVSPSAEAK
Sbjct: 181 FLCSDCSSENDAKRSLNAFPVSPSAEAK 208

BLAST of CmoCh11G018810 vs. TAIR 10
Match: AT4G22140.1 (PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein )

HSP 1 Score: 375.9 bits (964), Expect = 2.9e-104
Identity = 168/207 (81.16%), Postives = 191/207 (92.27%), Query Frame = 0

Query: 2   AKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVR 61
           +K K G+K+LDSYTIKGTNK+VR GDCVLMRPSD+ KPPYVARVEKIEAD RNNVKV  R
Sbjct: 10  SKIKTGRKELDSYTIKGTNKVVRAGDCVLMRPSDAGKPPYVARVEKIEADARNNVKVHCR 69

Query: 62  WYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFC 121
           WYYRPEES+GGRRQFHGAKELFLSDHFDVQSAHTIEGKC VH+FKNYT+L+NVGAEDY+C
Sbjct: 70  WYYRPEESLGGRRQFHGAKELFLSDHFDVQSAHTIEGKCIVHTFKNYTRLENVGAEDYYC 129

Query: 122 RFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNF 181
           RFEYKAATG FTPDRVAVYCKCEMPYNPDDLMVQCEGCKDW+HP+C+GMTI+EAKKLD+F
Sbjct: 130 RFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHF 189

Query: 182 LCSDCSSENDAKRSSNAFPVSPSAEAK 209
           +C++CSS++D K+S N F  SP+ + K
Sbjct: 190 VCAECSSDDDVKKSQNGFTSSPADDVK 216

BLAST of CmoCh11G018810 vs. TAIR 10
Match: AT4G22140.2 (PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein )

HSP 1 Score: 375.9 bits (964), Expect = 2.9e-104
Identity = 168/207 (81.16%), Postives = 191/207 (92.27%), Query Frame = 0

Query: 2   AKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVR 61
           +K K G+K+LDSYTIKGTNK+VR GDCVLMRPSD+ KPPYVARVEKIEAD RNNVKV  R
Sbjct: 10  SKIKTGRKELDSYTIKGTNKVVRAGDCVLMRPSDAGKPPYVARVEKIEADARNNVKVHCR 69

Query: 62  WYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDYFC 121
           WYYRPEES+GGRRQFHGAKELFLSDHFDVQSAHTIEGKC VH+FKNYT+L+NVGAEDY+C
Sbjct: 70  WYYRPEESLGGRRQFHGAKELFLSDHFDVQSAHTIEGKCIVHTFKNYTRLENVGAEDYYC 129

Query: 122 RFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLDNF 181
           RFEYKAATG FTPDRVAVYCKCEMPYNPDDLMVQCEGCKDW+HP+C+GMTI+EAKKLD+F
Sbjct: 130 RFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHF 189

Query: 182 LCSDCSSENDAKRSSNAFPVSPSAEAK 209
           +C++CSS++D K+S N F  SP+ + K
Sbjct: 190 VCAECSSDDDVKKSQNGFTSSPADDVK 216

BLAST of CmoCh11G018810 vs. TAIR 10
Match: AT4G39100.1 (PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein )

HSP 1 Score: 291.2 bits (744), Expect = 9.2e-79
Identity = 135/199 (67.84%), Postives = 156/199 (78.39%), Query Frame = 0

Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHR-NNVKVR 60
           M K K  +K L SY +K  NK ++ GD VLMR S+  KP YVARVE IE D R ++ KVR
Sbjct: 1   MPKQKAPRKQLKSYKLKHINKSIQEGDAVLMRSSEPGKPSYVARVEAIETDARGSHAKVR 60

Query: 61  VRWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDY 120
           VRWYYRPEESIGGRRQFHGAKE+FLSDHFD QSA TIEGKC VHSF +YTKLD+VG +D+
Sbjct: 61  VRWYYRPEESIGGRRQFHGAKEVFLSDHFDFQSADTIEGKCKVHSFSSYTKLDSVGNDDF 120

Query: 121 FCRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIDEAKKLD 180
           FCRFEY + TG F PDRV V+CKCEMPYNPDDLMVQCE C +WFHPSC+G TI+EAKK D
Sbjct: 121 FCRFEYNSTTGAFDPDRVTVFCKCEMPYNPDDLMVQCEECSEWFHPSCIGTTIEEAKKPD 180

Query: 181 NFLCSDCSSENDAKRSSNA 199
           NF C +CS +     +SN+
Sbjct: 181 NFYCEECSPQQQNLHNSNS 199

BLAST of CmoCh11G018810 vs. TAIR 10
Match: AT4G04260.1 (Bromo-adjacent homology (BAH) domain-containing protein )

HSP 1 Score: 259.2 bits (661), Expect = 3.9e-69
Identity = 127/194 (65.46%), Postives = 150/194 (77.32%), Query Frame = 0

Query: 31  MRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFDV 90
           MRPSD+ K PYVARVEKIEAD RNNVKV  RWYY PEES GGRRQ HGAKELFLSDHFDV
Sbjct: 1   MRPSDAGKAPYVARVEKIEADARNNVKVHCRWYYCPEESHGGRRQLHGAKELFLSDHFDV 60

Query: 91  QSAHTIEGKCTVHSFKNYTKLDNVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNPD 150
           QSAHTIEGKC VH+FKNYT+L+NVG EDY+C F+YKAATG FTPDRVAVY KCEMPYN D
Sbjct: 61  QSAHTIEGKCIVHTFKNYTRLENVGVEDYYCIFDYKAATGAFTPDRVAVYYKCEMPYNSD 120

Query: 151 DLMVQCEGCKDWFHPSCMGMTIDEAKKLDNFLCSDCSSEND-AKRSSNAFPVSPSAEAKT 210
           +LM +   C    H +C+G+TI+EAKKL++F+C +CSS+ D  KR  N F  S + + K 
Sbjct: 121 ELM-ELLLCHYRVHLACVGVTIEEAKKLEHFVCVECSSDEDGVKRFQNGFASSTTNDLKP 180

Query: 211 TEFSLCAARLKFEV 224
           +   +   R  +E+
Sbjct: 181 SAEKMIDVRASYEL 193

BLAST of CmoCh11G018810 vs. TAIR 10
Match: AT4G39100.2 (PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein )

HSP 1 Score: 247.7 bits (631), Expect = 1.2e-65
Identity = 115/163 (70.55%), Postives = 130/163 (79.75%), Query Frame = 0

Query: 1   MAKTKPGKKDLDSYTIKGTNKIVRPGDCVLMRPSDSDKPPYVARVEKIEADHR-NNVKVR 60
           M K K  +K L SY +K  NK ++ GD VLMR S+  KP YVARVE IE D R ++ KVR
Sbjct: 1   MPKQKAPRKQLKSYKLKHINKSIQEGDAVLMRSSEPGKPSYVARVEAIETDARGSHAKVR 60

Query: 61  VRWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCTVHSFKNYTKLDNVGAEDY 120
           VRWYYRPEESIGGRRQFHGAKE+FLSDHFD QSA TIEGKC VHSF +YTKLD+VG +D+
Sbjct: 61  VRWYYRPEESIGGRRQFHGAKEVFLSDHFDFQSADTIEGKCKVHSFSSYTKLDSVGNDDF 120

Query: 121 FCRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDW 163
           FCRFEY + TG F PDRV V+CKCEMPYNPDDLMVQCE C +W
Sbjct: 121 FCRFEYNSTTGAFDPDRVTVFCKCEMPYNPDDLMVQCEECSEW 163

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
F4JL284.0e-10381.16Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=... [more]
Q9FEN91.3e-7767.84Chromatin remodeling protein SHL OS=Arabidopsis thaliana OX=3702 GN=SHL PE=1 SV=... [more]
F4JGB71.1e-7161.74Chromatin remodeling protein At4g04260 OS=Arabidopsis thaliana OX=3702 GN=At4g04... [more]
Q9P2818.9e-1030.40BAH and coiled-coil domain-containing protein 1 OS=Homo sapiens OX=9606 GN=BAHCC... [more]
Q3UHR01.2e-0932.00BAH and coiled-coil domain-containing protein 1 OS=Mus musculus OX=10090 GN=Bahc... [more]
Match NameE-valueIdentityDescription
A0A5D3C9X77.8e-14283.11Chromatin remodeling protein EBS-like isoform X1 OS=Cucumis melo var. makuwa OX=... [more]
A0A6J1JN003.4e-121100.00chromatin remodeling protein EBS-like OS=Cucurbita maxima OX=3661 GN=LOC11148614... [more]
A0A6J1ESB93.4e-121100.00chromatin remodeling protein EBS-like OS=Cucurbita moschata OX=3662 GN=LOC111437... [more]
A0A7J6HIS85.4e-11977.29Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_018649 PE=4 SV=1[more]
A0A6J1C3E61.6e-11897.60chromatin remodeling protein EBS-like OS=Momordica charantia OX=3673 GN=LOC11100... [more]
Match NameE-valueIdentityDescription
AT4G22140.12.9e-10481.16PHD finger family protein / bromo-adjacent homology (BAH) domain-containing prot... [more]
AT4G22140.22.9e-10481.16PHD finger family protein / bromo-adjacent homology (BAH) domain-containing prot... [more]
AT4G39100.19.2e-7967.84PHD finger family protein / bromo-adjacent homology (BAH) domain-containing prot... [more]
AT4G04260.13.9e-6965.46Bromo-adjacent homology (BAH) domain-containing protein [more]
AT4G39100.21.2e-6570.55PHD finger family protein / bromo-adjacent homology (BAH) domain-containing prot... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 140..187
e-value: 4.7E-10
score: 49.4
IPR001025Bromo adjacent homology (BAH) domainSMARTSM00439BAH_4coord: 21..136
e-value: 2.5E-42
score: 156.6
IPR001025Bromo adjacent homology (BAH) domainPFAMPF01426BAHcoord: 23..135
e-value: 7.4E-23
score: 80.7
IPR001025Bromo adjacent homology (BAH) domainPROSITEPS51038BAHcoord: 21..136
score: 23.482244
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 140..188
e-value: 2.1E-10
score: 40.3
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 138..189
score: 9.2497
IPR043151Bromo adjacent homology (BAH) domain superfamilyGENE3D2.30.30.490coord: 1..133
e-value: 5.8E-31
score: 109.5
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 134..201
e-value: 1.4E-20
score: 74.4
NoneNo IPR availablePANTHERPTHR46364OS08G0421900 PROTEINcoord: 1..208
NoneNo IPR availablePANTHERPTHR46364:SF12SUBFAMILY NOT NAMEDcoord: 1..208
NoneNo IPR availableCDDcd04714BAH_BAHCC1coord: 22..156
e-value: 1.44222E-58
score: 181.446
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 141..186
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 130..190

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G018810.1CmoCh11G018810.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006325 chromatin organization
biological_process GO:0050790 regulation of catalytic activity
biological_process GO:0007165 signal transduction
cellular_component GO:0000159 protein phosphatase type 2A complex
molecular_function GO:0003682 chromatin binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0019888 protein phosphatase regulator activity
molecular_function GO:0016740 transferase activity