CmoCh11G018250 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G018250
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	AP complex subunit sigma
Location	Cmo_Chr11: 12772177 .. 12774586 (-)
RNA-Seq Expression	CmoCh11G018250
Synteny	CmoCh11G018250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTCCGCCCATTTTGCACCCCGAAGCCTTCGGCGGGTAGGAATTCTGAATGAAAAATATTTTTGCAGCGGAACAACGGACAAGGAACTGTCCTTGATCGGAGGGATCAAGTATTTGGTTGAGGATTCTGGAATTGAAACTTTTGATACCTGAAAGTTCAGAGCAAAATGGTAATTGATTTCATTGCTTTGATTCATTTCTAGGCTTTGATTGTTTCAATGTTGAAATTGCTACGTTCTTGTTGTTAGTCCACCGGTTCGCGCATCTGCTTTGCTCTTTCTTGATGCGATGGTTTAATTGGTTTCTCTTTTACTGCTGAATTTTTGTGTCGTTTGAAATTATTTGGAGTGATCTCCGTGTTGTAAAGATTCATATATTTGCTTAGCTGACATCCGAAATGCTCAACTTTTGTTTCTTTTTGTTGTTTGATTCGTCGTGTTCGTTCCTGCTGAATTGTTGTGGCGATTCTTGTTTCACTTCTTTTGTTCTGAAGCTCTTGTGAATGTGCTTAAGCCATGGGTTCCTGAACGATTAAATTCTCAACGACTTTTGTAAATTACCTGTAAGATCTTATTATTGTGGATTGGAGCCCTCTTCTATATCTCCTCATCATTCAAATTTTCTCAATAATGCGTGGTTTCTCATAGAAAAATAAACTTTCTTCAGTGCAACTTAGGTTATCTTCAACCTTTTGTTGCTCCAGTAAAGAAAATTTGGCCTAGCGTATGTCTTGCATGGTGCTCTAACTGATGTTGTTGGTGTAAATTTCCAGATTCACTTCGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGTTGACCAAATGGTATTCTCCTTATTCTCAGAAGGAGAGATCTAAGGTGGGTTAGCCATTTGCCTCATTCTGTAATGTAATTCTAATAGCTTTTCTTAATTTCCAATCCAAAGACATTTGAATGCTTATTTGCTTCAATAAGTCTTAGTACCCCTAGGATCTATTGGACTTACCATATTATGGCACGTGCTCGGGTCTGCTCTCGTTCTTTAAAAAGGTTATGCGTGAGCTTAGTGGAATGATTCTAAATCGGGCGCCTAAACTTTGCAACTTTGTGGAATGGAGGGGACTCAAAGCTGTCTATAAACGGTACGACGCGGTATATTAATGTGTTCTGCCACCCAAATATTTACCTCTTTTGCAGATGATTAATGATTCTATTGGATGTGCAATGCAGATATGCCAGTCTTTACTTTTGCCTATGCATTGATCAGGAGGACAACGAATTAGAGATCCTTGAAATTATTCATCATTATGTTGAGATTTTGGATCGTTACTTCGGCAGTGTAAGTGAATTTAATTTTAGTTCGTAAGGTGTTTGAGACCATTCTTTGTGATCTTTTATTCATGTTTGTAGGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGTATTATTCACTTGCTTATTAAAGGTGCACGTTTTCTTTAATTTGCATCTCGTTGCCTCTGCTAGACATTTGTGTAAGTAAGCCCGACGCATCTGAATTACTCGTCCTCTTGCTTGCTCGCCAGTAACATTGTCTTAAGTGAACGTTCATGTTCACGTCCTTGATATGAAACCTTGAATGCACTGTGTACTTGGTATATTCACTTGCTTATATTAAAGGTGTACGTTGTCTTTAATGTGCATCTTGTTGCCTCTGCTAGACATTTGTGTAAGTAAGCCCGATGCATCTGAATTACGTGTCATCTTGCTTGCTCGCCAGTAACATTGTCTTAAGTGATCGTTCACGTTCACGCCCTTGAGATGAAACCTTGAATGCGTTGTGTACTTTTCTTTCACCTGCCGTGTAAGCCCGATGCATCTGAATTACTTGTCCTCTTGCTTGCTTGCCAGTAACATTGTGTTAAGTGAACGTTCACGTTCACGTCCTTGATATGAAACTTTGAATGCGTTGTGTACTTTTTTTCTTTTTCTAACATTGAAGGCGTATTATATATTGGATGAGCTTCTAATTGCTGGAGAACTCCAAGAATCTAGCAAGAAAACAGTAGCAAGATTGATAGCTGCACAGGTAACTATCTCCTTTTATGTTTGCAGCACCTTATGATCTCAGTTTGGGTGTATGTTGAGTTGATTTTGGTTTGTAGGATTCGTTGGTGGAGACTGCAAAGGAGCAAGCTAGTTCAATAAGTAACATAATTGCACAGGCCACCAAGTAGAAATACTTGGAAGAGTTTTTGGGGCTTGTGTTTTTTTGTAGGTAGGGGATGATGAAGGGTCAGACTCCCTTCTTTTAGGGGCTTGTTTTTTGTTTGACCTTCCATTCTTTCCTTCTCTCTCGGTTTCATATAAATATATACATGTTTGGAAACAATTGTTAAATGAATACGACTCTCTACAATGGTATGATATTGTCCACTTTGTG

mRNA sequence

ATGAACTCCGCCCATTTTGCACCCCGAAGCCTTCGGCGGCGGAACAACGGACAAGGAACTGTCCTTGATCGGAGGGATCAAATTCACTTCGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGTTGACCAAATGGTATTCTCCTTATTCTCAGAAGGAGAGATCTAAGGAGGACAACGAATTAGAGATCCTTGAAATTATTCATCATTATGTTGAGATTTTGGATCGTTACTTCGGCAGTGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGCGTATTATATATTGGATGAGCTTCTAATTGCTGGAGAACTCCAAGAATCTAGCAAGAAAACAGTAGCAAGATTGATAGCTGCACAGGATTCGTTGGTGGAGACTGCAAAGGAGCAAGCTAGTTCAATAAGTAACATAATTGCACAGGCCACCAAGTAGAAATACTTGGAAGAGTTTTTGGGGCTTGTGTTTTTTTGTAGGTAGGGGATGATGAAGGGTCAGACTCCCTTCTTTTAGGGGCTTGTTTTTTGTTTGACCTTCCATTCTTTCCTTCTCTCTCGGTTTCATATAAATATATACATGTTTGGAAACAATTGTTAAATGAATACGACTCTCTACAATGGTATGATATTGTCCACTTTGTG

Coding sequence (CDS)

ATGAACTCCGCCCATTTTGCACCCCGAAGCCTTCGGCGGCGGAACAACGGACAAGGAACTGTCCTTGATCGGAGGGATCAAATTCACTTCGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGTTGACCAAATGGTATTCTCCTTATTCTCAGAAGGAGAGATCTAAGGAGGACAACGAATTAGAGATCCTTGAAATTATTCATCATTATGTTGAGATTTTGGATCGTTACTTCGGCAGTGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGCGTATTATATATTGGATGAGCTTCTAATTGCTGGAGAACTCCAAGAATCTAGCAAGAAAACAGTAGCAAGATTGATAGCTGCACAGGATTCGTTGGTGGAGACTGCAAAGGAGCAAGCTAGTTCAATAAGTAACATAATTGCACAGGCCACCAAGTAG

Protein sequence

MNSAHFAPRSLRRRNNGQGTVLDRRDQIHFVLLISRQGKVRLTKWYSPYSQKERSKEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK

Homology

[Close]

BLAST of CmoCh11G018250 vs. ExPASy Swiss-Prot
Match: O23685 (AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana OX=3702 GN=AAP19-2 PE=2 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.4e-48
Identity = 108/159 (67.92%), Postives = 114/159 (71.70%), Query Frame = 0


Query: 28  IHFVLLISRQGKVRLTKWYSPYSQKERSK------------------------------- 87
           IHFVLL+SRQGKVRLTKWYSPY+QKERSK                               
Sbjct: 2   IHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYKR 61

Query: 88  ------------EDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 144
                       EDNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG
Sbjct: 62  YASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

[Close]

BLAST of CmoCh11G018250 vs. ExPASy Swiss-Prot
Match: Q8LEZ8 (AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana OX=3702 GN=AAP19-1 PE=1 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.1e-48
Identity = 108/160 (67.50%), Postives = 114/160 (71.25%), Query Frame = 0


Query: 28  IHFVLLISRQGKVRLTKWYSPYSQKERSK------------------------------- 87
           IHFVLL+SRQGKVRLTKWYSPY+QKERSK                               
Sbjct: 2   IHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYKR 61

Query: 88  ------------EDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 145
                        DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG
Sbjct: 62  YASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

[Close]

BLAST of CmoCh11G018250 vs. ExPASy Swiss-Prot
Match: B0G185 (AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum OX=44689 GN=ap1s2 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.3e-34
Identity = 78/141 (55.32%), Postives = 93/141 (65.96%), Query Frame = 0


Query: 29  HFVLLISRQGKVRLTKWYSPYSQKERS--------------------------------- 88
           HF+LL+SRQGK RLTKWYSP++ KE+S                                 
Sbjct: 4   HFLLLLSRQGKTRLTKWYSPFTNKEKSRFTREIGNMVLNRPPKLCNFLEWKEYKIIFKRY 63

Query: 89  ----------KEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGE 127
                     +EDNEL +LEIIHH+VEILDRYFG+VCELDLIFNFHKAYYILDEL++AGE
Sbjct: 64  ASLYFVVCCDREDNELIVLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDELIMAGE 123

[Close]

BLAST of CmoCh11G018250 vs. ExPASy Swiss-Prot
Match: Q7TN05 (AP-1 complex subunit sigma-3 OS=Mus musculus OX=10090 GN=Ap1s3 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.4e-26
Identity = 66/146 (45.21%), Postives = 81/146 (55.48%), Query Frame = 0


Query: 28  IHFVLLISRQGKVRLTKWYSPYSQKERSK------------------------------- 87
           IHF+LL SRQGK+RL KWY+    KER K                               
Sbjct: 2   IHFILLFSRQGKLRLQKWYTTLPDKERKKITRDIIQTVLSRGHRTSSFIDWKELKLVYKR 61

Query: 88  ------------EDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 131
                       +DNEL  LEI+H YVE+LD+YFG+VCELD+IFNF KAY+ILDE +I G
Sbjct: 62  YASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGG 121

[Close]

BLAST of CmoCh11G018250 vs. ExPASy Swiss-Prot
Match: Q3ZBS3 (AP-1 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP1S2 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.8e-26
Identity = 68/146 (46.58%), Postives = 81/146 (55.48%), Query Frame = 0


Query: 28  IHFVLLISRQGKVRLTKWYSPYSQKERSK------------------------------- 87
           + F+LL SRQGK+RL KWY P S KE+ K                               
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 88  ------------EDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 131
                       +DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

[Close]

BLAST of CmoCh11G018250 vs. ExPASy TrEMBL
Match: A0A6J1C1K2 (AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111007622 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 6.5e-49
Identity = 117/160 (73.12%), Postives = 117/160 (73.12%), Query Frame = 0


Query: 28  IHFVLLISRQGKVRLTKWYSPYSQKERSK------------------------------- 87
           IHFVLLISRQGKVRLTKWYSPYSQKERSK                               
Sbjct: 2   IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 61

Query: 88  ------------EDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 145
                       EDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG
Sbjct: 62  YASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

[Close]

BLAST of CmoCh11G018250 vs. ExPASy TrEMBL
Match: A0A5D3D5G1 (AP-1 complex subunit sigma-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00010 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 6.5e-49
Identity = 117/168 (69.64%), Postives = 119/168 (70.83%), Query Frame = 0


Query: 20  TVLDRRDQIHFVLLISRQGKVRLTKWYSPYSQKERSK----------------------- 79
           T   R   IHFVLLISRQGKVRLTKWYSPYSQKERSK                       
Sbjct: 71  TEFTREHLIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWR 130

Query: 80  --------------------EDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYI 139
                               +DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYI
Sbjct: 131 GLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYI 190

Query: 140 LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 145
           LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 191 LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 238

[Close]

BLAST of CmoCh11G018250 vs. ExPASy TrEMBL
Match: A0A6J1JMH4 (AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111486525 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 6.5e-49
Identity = 117/160 (73.12%), Postives = 117/160 (73.12%), Query Frame = 0


Query: 28  IHFVLLISRQGKVRLTKWYSPYSQKERSK------------------------------- 87
           IHFVLLISRQGKVRLTKWYSPYSQKERSK                               
Sbjct: 2   IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRAPKLCNFVEWRGLKAVYKR 61

Query: 88  ------------EDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 145
                       EDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG
Sbjct: 62  YASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

[Close]

BLAST of CmoCh11G018250 vs. ExPASy TrEMBL
Match: A0A6J1EQV1 (AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111435057 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 6.5e-49
Identity = 117/160 (73.12%), Postives = 117/160 (73.12%), Query Frame = 0


Query: 28  IHFVLLISRQGKVRLTKWYSPYSQKERSK------------------------------- 87
           IHFVLLISRQGKVRLTKWYSPYSQKERSK                               
Sbjct: 2   IHFVLLISRQGKVRLTKWYSPYSQKERSKVMRELSGMILNRAPKLCNFVEWRGLKAVYKR 61

Query: 88  ------------EDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 145
                       EDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG
Sbjct: 62  YASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

[Close]

BLAST of CmoCh11G018250 vs. ExPASy TrEMBL
Match: A0A4D6MMQ4 (Solute carrier family 39 OS=Vigna unguiculata OX=3917 GN=DEO72_LG7g3222 PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 8.5e-49
Identity = 116/178 (65.17%), Postives = 126/178 (70.79%), Query Frame = 0


Query: 17  GQGTVL-------DRRDQIHFVLLISRQGKVRLTKWYSPYSQKERSK------------- 76
           G+G+V+       + R+ IHFVLLISRQGKVRLTKWYSPYSQKER+K             
Sbjct: 326 GEGSVILAAEGASESREMIHFVLLISRQGKVRLTKWYSPYSQKERNKAIREISGVVLTRA 385

Query: 77  ------------------------------EDNELEILEIIHHYVEILDRYFGSVCELDL 136
                                         EDNELE+LEIIHH+VEILDRYFGSVCELDL
Sbjct: 386 PKLCNFVEWRGHKIVYKRYASLYFCMCIDEEDNELEVLEIIHHFVEILDRYFGSVCELDL 445

Query: 137 IFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 145
           IFNFHKAYYILDELLIAGELQESSKKT+ARLIAAQDSLVETAKE+ASSISNIIAQATK
Sbjct: 446 IFNFHKAYYILDELLIAGELQESSKKTIARLIAAQDSLVETAKEEASSISNIIAQATK 503

[Close]

BLAST of CmoCh11G018250 vs. NCBI nr
Match: KAF9602878.1 (hypothetical protein IFM89_031824 [Coptis chinensis])

HSP 1 Score: 216.5 bits (550), Expect = 1.5e-52
Identity = 110/117 (94.02%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 28  IHFVLLISRQGKVRLTKWYSPYSQKERSKEDNELEILEIIHHYVEILDRYFGSVCELDLI 87
           IHFVLLISRQGKVRLTKWYSPYSQKER+KEDNELE+LEIIHH+VEILDRYFGSVCELDLI
Sbjct: 2   IHFVLLISRQGKVRLTKWYSPYSQKERTKEDNELEVLEIIHHFVEILDRYFGSVCELDLI 61

Query: 88  FNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 145
           FNFHKAYYILDE+LIAGELQE+SKKTVARLIAAQDSLVETAKE+A SISNIIAQATK
Sbjct: 62  FNFHKAYYILDEILIAGELQETSKKTVARLIAAQDSLVETAKEEAGSISNIIAQATK 118

[Close]

BLAST of CmoCh11G018250 vs. NCBI nr
Match: KAG6516773.1 (hypothetical protein ZIOFF_027247 [Zingiber officinale])

HSP 1 Score: 206.8 bits (525), Expect = 1.2e-49
Identity = 115/144 (79.86%), Postives = 120/144 (83.33%), Query Frame = 0


Query: 17  GQGTVLDRRDQIHFVLLISRQGKVRLTKWYSPYSQKERSK----------------EDNE 76
           G+G  L R  QIHFVLLISRQGKVRLTKWYSPYSQKER+K                EDNE
Sbjct: 157 GRGMPLFR--QIHFVLLISRQGKVRLTKWYSPYSQKERTKVDMIYASLYFCMCIDAEDNE 216

Query: 77  LEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAA 136
           LEILEIIHH+VEILDRYFGSVCELDLIFNFHKAYYILDE+LIAGELQESSKK VARLIAA
Sbjct: 217 LEILEIIHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKAVARLIAA 276

Query: 137 QDSLVETAKEQASSISNIIAQATK 145
           QD LVE AKEQASSISN+IAQATK
Sbjct: 277 QDQLVEAAKEQASSISNMIAQATK 298

[Close]

BLAST of CmoCh11G018250 vs. NCBI nr
Match: KAG7022803.1 (AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.9 bits (520), Expect = 4.6e-49
Identity = 118/162 (72.84%), Postives = 118/162 (72.84%), Query Frame = 0


Query: 26  DQIHFVLLISRQGKVRLTKWYSPYSQKERSK----------------------------- 85
           D IHFVLLISRQGKVRLTKWYSPYSQKERSK                             
Sbjct: 89  DLIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRAPKLCNFVEWRGLKAVY 148

Query: 86  --------------EDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLI 145
                         EDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLI
Sbjct: 149 KRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLI 208

[Close]

BLAST of CmoCh11G018250 vs. NCBI nr
Match: KAG6589096.1 (AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203.8 bits (517), Expect = 1.0e-48
Identity = 118/165 (71.52%), Postives = 118/165 (71.52%), Query Frame = 0


Query: 23  DRRDQIHFVLLISRQGKVRLTKWYSPYSQKERSK-------------------------- 82
           D    IHFVLLISRQGKVRLTKWYSPYSQKERSK                          
Sbjct: 89  DLTKMIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRAPKLCNFVEWRGLK 148

Query: 83  -----------------EDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDE 142
                            EDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDE
Sbjct: 149 AVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDE 208

Query: 143 LLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 145
           LLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 209 LLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 253

[Close]

BLAST of CmoCh11G018250 vs. NCBI nr
Match: XP_022135730.1 (AP-1 complex subunit sigma-2 [Momordica charantia] >XP_022135731.1 AP-1 complex subunit sigma-2 [Momordica charantia])

HSP 1 Score: 203.4 bits (516), Expect = 1.3e-48
Identity = 117/160 (73.12%), Postives = 117/160 (73.12%), Query Frame = 0


Query: 28  IHFVLLISRQGKVRLTKWYSPYSQKERSK------------------------------- 87
           IHFVLLISRQGKVRLTKWYSPYSQKERSK                               
Sbjct: 2   IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 61

Query: 88  ------------EDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 145
                       EDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG
Sbjct: 62  YASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

[Close]

BLAST of CmoCh11G018250 vs. TAIR 10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 193.0 bits (489), Expect = 1.7e-49
Identity = 108/159 (67.92%), Postives = 114/159 (71.70%), Query Frame = 0


Query: 28  IHFVLLISRQGKVRLTKWYSPYSQKERSK------------------------------- 87
           IHFVLL+SRQGKVRLTKWYSPY+QKERSK                               
Sbjct: 2   IHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYKR 61

Query: 88  ------------EDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 144
                       EDNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG
Sbjct: 62  YASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

[Close]

BLAST of CmoCh11G018250 vs. TAIR 10
Match: AT2G17380.1 (associated protein 19 )

HSP 1 Score: 192.6 bits (488), Expect = 2.2e-49
Identity = 108/160 (67.50%), Postives = 114/160 (71.25%), Query Frame = 0


Query: 28  IHFVLLISRQGKVRLTKWYSPYSQKERSK------------------------------- 87
           IHFVLL+SRQGKVRLTKWYSPY+QKERSK                               
Sbjct: 2   IHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYKR 61

Query: 88  ------------EDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 145
                        DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG
Sbjct: 62  YASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

[Close]

BLAST of CmoCh11G018250 vs. TAIR 10
Match: AT4G35410.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-25
Identity = 62/108 (57.41%), Postives = 65/108 (60.19%), Query Frame = 0


Query: 28  IHFVLLISRQGKVRLTKWYSPYSQKERSK------------------------------- 87
           IHFVLL+SRQGKVRLTKWYSPY+QKERSK                               
Sbjct: 2   IHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYKR 61

Query: 88  ------------EDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHK 93
                       EDNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHK
Sbjct: 62  YASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHK 109

[Close]

BLAST of CmoCh11G018250 vs. TAIR 10
Match: AT1G47830.1 (SNARE-like superfamily protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-19
Identity = 54/140 (38.57%), Postives = 71/140 (50.71%), Query Frame = 0


Query: 28  IHFVLLISRQGKVRLTKWYSPYSQKERSK------------------------------- 87
           I F+LL +RQGK RL K+Y P  + E+ K                               
Sbjct: 2   IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYRR 61

Query: 88  ------------EDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 125
                        DNEL  LE IH +VEILD +F +VCELDL+FNFHK Y ILDE ++AG
Sbjct: 62  YAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 121

[Close]

BLAST of CmoCh11G018250 vs. TAIR 10
Match: AT2G19790.1 (SNARE-like superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 2.4e-11
Identity = 39/138 (28.26%), Postives = 68/138 (49.28%), Query Frame = 0


Query: 28  IHFVLLISRQGKVRLTKWYSPYSQKER--------------------------------- 87
           I F+L++++QG+ RL ++Y   + +ER                                 
Sbjct: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVYRR 62

Query: 88  ----------SKEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 123
                       ++NEL ILE IH  VE +D++FG+VCELD++F+  KA+++L+E+++ G
Sbjct: 63  YASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVMNG 122

The following BLAST results are available for this feature:

BLAST of CmoCh11G018250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23685	2.4e-48	67.92	AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana OX=3702 GN=AAP19-2 PE=2 SV=...	[more]
Q8LEZ8	3.1e-48	67.50	AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana OX=3702 GN=AAP19-1 PE=1 SV=...	[more]
B0G185	3.3e-34	55.32	AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum OX=44689 GN=ap1s2 PE=3 ...	[more]
Q7TN05	4.4e-26	45.21	AP-1 complex subunit sigma-3 OS=Mus musculus OX=10090 GN=Ap1s3 PE=1 SV=1	[more]
Q3ZBS3	9.8e-26	46.58	AP-1 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP1S2 PE=2 SV=1	[more]

BLAST of CmoCh11G018250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C1K2	6.5e-49	73.13	AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111007622 PE=3 SV=...	[more]
A0A5D3D5G1	6.5e-49	69.64	AP-1 complex subunit sigma-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A6J1JMH4	6.5e-49	73.13	AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111486525 PE=3 SV=1	[more]
A0A6J1EQV1	6.5e-49	73.13	AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111435057 PE=3 SV=1	[more]
A0A4D6MMQ4	8.5e-49	65.17	Solute carrier family 39 OS=Vigna unguiculata OX=3917 GN=DEO72_LG7g3222 PE=3 SV=...	[more]

BLAST of CmoCh11G018250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF9602878.1	1.5e-52	94.02	hypothetical protein IFM89_031824 [Coptis chinensis]	[more]
KAG6516773.1	1.2e-49	79.86	hypothetical protein ZIOFF_027247 [Zingiber officinale]	[more]
KAG7022803.1	4.6e-49	72.84	AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6589096.1	1.0e-48	71.52	AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022135730.1	1.3e-48	73.13	AP-1 complex subunit sigma-2 [Momordica charantia] >XP_022135731.1 AP-1 complex ...	[more]

BLAST of CmoCh11G018250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35410.2	1.7e-49	67.92	Clathrin adaptor complex small chain family protein	[more]
AT2G17380.1	2.2e-49	67.50	associated protein 19	[more]
AT4G35410.1	1.3e-25	57.41	Clathrin adaptor complex small chain family protein	[more]
AT1G47830.1	1.4e-19	38.57	SNARE-like superfamily protein	[more]
AT2G19790.1	2.4e-11	28.26	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 56..123 e-value: 9.8E-23 score: 80.7
None	No IPR available	GENE3D	3.30.450.60		coord: 27..55 e-value: 7.8E-6 score: 27.7 coord: 56..140 e-value: 4.8E-30 score: 106.4
None	No IPR available	PANTHER	PTHR11753:SF49	AP-1 COMPLEX SUBUNIT SIGMA-2	coord: 56..135 coord: 28..56
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 56..135 coord: 28..56
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 28..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G018250.1	CmoCh11G018250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030001	metal ion transport
biological_process	GO:0015031	protein transport
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0031410	cytoplasmic vesicle
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0030117	membrane coat