CmoCh11G018190 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G018190
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr11: 12737992 .. 12738718 (-)
RNA-Seq ExpressionCmoCh11G018190
SyntenyCmoCh11G018190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTCTGTTAAAGTATTGCCCGATTTCGACTCTAGGAGGTGTTTGCTGACTGCCCTTTTGTTCTTGTATGCATCAAATTCGTTATCGTTGAGTTTTTCTTCATGTTTTGGTTCTATGTTCAACTGGGTTGCTTTTGATTGTATGGATTTGTGTGTTTTTGCCGCGGTTTTTCTCTTTTTCTGACAGGTAATTTTGATTGTGCAAAAGAGTTGGACGTTTGATTCATTCAGTCTATGAAATCATCGCAGGAAGCTAACTCCATTTATTGTTGTCGTGGTTTTCATGGTTCAGAATTGAATGTTCACGAAAGTTTTCTCCTCTTCCCCTTTATTCTCGTGCTGAGTATGAATTTGTGTTAAGTTCTTGGAGCTGGGGACATGGGTAGTGGCCATGTCTTTCATGTCTTTCCACTTAAAGGTAGGTTCAGTTTCCAATTATGAGTTCTTGTTGAATAGCAGCTTAATTATTTGCCCTTTTTGGACAGTTTGTTTTGGAGTAATTCTCTACTTTAGCTGATAAATTATTTGGTTTTGTAGAGGGAGAAATTATGGGCATGGTATGTATTTCATTGTAGGTTGATTCTTAATCTTTGATTTCTCTTGTTAAAAGTAATCTCTCTTGAACTGCCTTTTTTTAGCTGTTGTAAAGATTTGGGAGTGATGGTTTTGATTAATATGATGTTTATTTATTGCAGAAGCTGCATTTAGCTTGTTCCTATAGTTGA

mRNA sequence

ATGATTTCTGTTAAAGTATTGCCCGATTTCGACTCTAGGAGGTGTTTGCTGACTGCCCTTTTGTTCTTGTATGCATCAAATTCGTTATCGTTGAGTTTTTCTTCATGTTTTGGTTCTATGTTCAACTGGGTTGCTTTTGATTTTCTTGGAGCTGGGGACATGGGTAGTGGCCATGTCTTTCATGTCTTTCCACTTAAAGCTGATAAATTATTTGGTTTTGTAGAGGGAGAAATTATGGGCATGAAGCTGCATTTAGCTTGTTCCTATAGTTGA

Coding sequence (CDS)

ATGATTTCTGTTAAAGTATTGCCCGATTTCGACTCTAGGAGGTGTTTGCTGACTGCCCTTTTGTTCTTGTATGCATCAAATTCGTTATCGTTGAGTTTTTCTTCATGTTTTGGTTCTATGTTCAACTGGGTTGCTTTTGATTTTCTTGGAGCTGGGGACATGGGTAGTGGCCATGTCTTTCATGTCTTTCCACTTAAAGCTGATAAATTATTTGGTTTTGTAGAGGGAGAAATTATGGGCATGAAGCTGCATTTAGCTTGTTCCTATAGTTGA

Protein sequence

MISVKVLPDFDSRRCLLTALLFLYASNSLSLSFSSCFGSMFNWVAFDFLGAGDMGSGHVFHVFPLKADKLFGFVEGEIMGMKLHLACSYS
Homology
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BLAST of CmoCh11G018190 vs. NCBI nr
Match: KAG6589090.1 (hypothetical protein SDJN03_17655, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.1 bits (305), Expect = 2.5e-24
Identity = 63/66 (95.45%), Postives = 63/66 (95.45%), Query Frame = 0 

Query: 1  MISVKVLPDFDSRRCLLTALLFLYASNSLSLSFSSCFGSMFNWVAFDFLGAGDMGSGHVF 60
          MISVKVLPDFDSRRCLLTALLFLYASNSLSLSFSSCFGSMFNWVAFDFLGAGDMGSG   
Sbjct: 1  MISVKVLPDFDSRRCLLTALLFLYASNSLSLSFSSCFGSMFNWVAFDFLGAGDMGSG--- 60

Query: 61 HVFPLK 67
          HVFPLK
Sbjct: 61 HVFPLK 63

The following BLAST results are available for this feature:
BLAST of CmoCh11G018190 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh11G018190 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh11G018190 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6589090.12.5e-2495.45hypothetical protein SDJN03_17655, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh11G018190 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G018190.1CmoCh11G018190.1mRNA