CmoCh11G016270 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CAACTTTTTCAATCTCTCTGCTCCGTTTCCCTCTCTTTCTCTCTCCTAAACCCCCATTTTCAGTCCCGGATGATCACAGTGGCATTAGGTTAAGAATCAAACAACCAAATTCATCAATGGGTTCCTGTGTTTCAATCCATAGAAATTCCGATTCCGCTCTGAAATTCAGGCTCTCAATTGGGTCTAAAACGAATGAAATGGTAATTCCGCCGTCGCCGATCAAGGATAACAACGCCCTGATCAGCGGCGCTGGCGGTGCTGGCGGTGTTGACGGTGAAGGCGGTGTAGGCGGTGTTTTTGTCAAATCTCAGAGGTCTCCTTCTCAATTAGGTATTACTTCTTTTTCTTCTTCTTGATTTTCTACAACTGTAATTCCGTTTGTTTTGTTCTTTTTCTTTGTTACTTTTGTGTTGATTGATGAACTTTGATGCTTTGAAATTAGTGGTTAGGACCATTTTTGCCTACTGATCTTCTGAAGCGAAGTCATGTGCGATCTAAAGTGTTTGGTTCTTTCTTTTTCTAGTTGAATATCTTATGGAATCATTGCCTTTTGGACATATTGTTTAATTGGATTGATGATGTTGATCTAGGTCCCATTTGTTTTGTATTATCTAAATCTTCAGAGATTGATGAACAGAGGAATTTTACTTTTTCCCCCTTTAATTGTTTTTAATAATTGTTCATTAAAATTAGAGAAATCCTAGATTTCCTTTCTGTCTCTTGTGGCTTGATGATCAAATTTATTAGAAGGAATTTGGGATTGTTCTGTGTTCTGAGATGAAGAAATCATTCCTTTGTTCATTGGATGCTCTGTTTCCTGTGAAGTTCTATGTATTGTTCTGAGTGGATTGTGGTTGATTATTGAACTGCTATAAGAAAAAAAAGTCTCATAGAGCTTTGTTACTATAGTTTTCTCGCTTTTTATACGAGAAATTATTAGAGGAAGCTGTCACTATGTGATGTTCGATTTCGGATGGTTGGATGTAGGAAAAATGCTTCAAAGATATTTCAAATCTTGTATTTAGACCCGCGGTTTTTCGAATCCTTACCTAACAATTATTAAGAGGTTGTGAGGACAATATCTTCTAGCAGTGGGCTTGAGCTGTTACAAATGGTATCAGAGCAAGATACCGGGCAGTGCGCCAGCTAGGACGCTGGGCCCCGAAGGGGGTGGATTATGAGACCCCACGTCAATTGGAGAGAGAAACGAGTGCTAGCGAGGACGCTGGGCCTCGAAGGGGGTGGATTGAGATCCCGCATCGATTGGAAAGAAGAACGAGTGTCAGCGAGGACGTTGGACCCTGAAGAGGGGTGGATTGTGAGATCCCACATTGGTTGAAGAGGGGAACGAAGCATTTTTCATAAGAATGTGGAAACCTCTCCTTAGCATATGCGTTTTTAAAACCTTGAGGAGAAGCCCGAAAGGGAAAGCCAAAAGAGGACAATATCTGCTAGCGGTGGGCTTAGGGTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTGTTACAGAAGTAGAAGTAGTCTTTGTTACAGAAGTAGAAGTAGTCTTTGTTATAGGGATTGCTATCCAACAGAAGTAGAAGTAGTCTTTGTTATAGGGATTGCTATCTTTGATGGATAGTTTCTTGTTTCTCTTAATTTCACATGAATCATGCTAGGGTTCATGTGAAGTGAAGAATGCTAACTCGAAAAACTTTTCACCAAAAATCGAACCCAGTAACTCGAAAAACTTCTCGTGTCTTTTTGGTATGATTTTTCAATCCCATGGTTTGTTTAGGCTGCTATTGCTCGTTTTTTTTAATATCCGTGAATGTTCGGGCCTCAACTATTCTCACATGACAACTGTCTCATCCTAGCATGTTTGATTGCTAAAGTAACTCGTAGGATATTAAATCCTAAGTAGATGGTCACTCCGACTTAAACTCGTTCTTTCTAAGCCCTTCACAATTTATACGACCCTTATTGATCACTAGGCGGCGTTCATATGATTGAATTCTTTCTTTTATGTCCTTGAATTTATTCCTTATGTTTTGGGTAATTTGTTCTATGTTGGCTGTTCTATGAAAGAAGTTGACAATAGAACTGTGCTGTTTTCATAGGTAGCAAAGATGAAGCGTTTTTCGATTCCCGAGGCTGGTTGGATTCGGATTGTGAAGATGATTTCTATAGTGTCAATGGTGGTAAGTAGACATTTAAAACGTTCGTTTACTCTAATAGATCATATCATATTAGAAATGATCTTATAGGTTTCCGAACTTTCAATCTTTCAATTTTGTGAGCTTAAAGAATTCTTTTTATGCTAGTTGCATTTTGATCTCTTCTCCTAAAAGTATTCGATTGCAATGGCTGCAGACTTCACCCCTTCACGAGGAAACACTCCGGTACACCCCAGCTTCTCCTCTGGTACTCCTCGAATCAACCAAGTTCATGTCATCGACAATCAAACTCCGATCGCCGTTCCCGAACCATCACCCACAGGAAAGAAGAAGCTAGCTGAACTATTCAGGGACAGCTCCAGAAAAGACAGTGACATACAAGCCAAACCAACTCTAAACGAACTCGCGTTACAGTCGAATCCCGAAAAGCCTCACGTGTCAAGAACAAACTCTGTATGCAGCAGCAGCGAGAGGACCTCTAATGGAGATGTCTGGACTGAGAAGGAACGGCCAGTTGGATCTGCACAATGCTGCCTCCCTAGCTTGGGACCATGCCGTAGCTTCGGTGACCGGAGGAAGAAGGCGCGTCCAGCCATAGTTGTATAA CAACTTTTTCAATCTCTCTGCTCCGTTTCCCTCTCTTTCTCTCTCCTAAACCCCCATTTTCAGTCCCGGATGATCACAGTGGCATTAGGTTAAGAATCAAACAACCAAATTCATCAATGGGTTCCTGTGTTTCAATCCATAGAAATTCCGATTCCGCTCTGAAATTCAGGCTCTCAATTGGGTCTAAAACGAATGAAATGGTAATTCCGCCGTCGCCGATCAAGGATAACAACGCCCTGATCAGCGGCGCTGGCGGTGCTGGCGGTGTTGACGGTGAAGGCGGTGTAGGCGGTGTTTTTGTCAAATCTCAGAGGTCTCCTTCTCAATTAGCAAAGATGAAGCGTTTTTCGATTCCCGAGGCTGGTTGGATTCGGATTGTGAAGATGATTTCTATAGTGTCAATGGTGTATTCGATTGCAATGGCTGCAGACTTCACCCCTTCACGAGGAAACACTCCGGTACACCCCAGCTTCTCCTCTGGTACTCCTCGAATCAACCAAGTTCATGTCATCGACAATCAAACTCCGATCGCCGTTCCCGAACCATCACCCACAGGAAAGAAGAAGCTAGCTGAACTATTCAGGGACAGCTCCAGAAAAGACAGTGACATACAAGCCAAACCAACTCTAAACGAACTCGCGTTACAGTCGAATCCCGAAAAGCCTCACGTGTCAAGAACAAACTCTGTATGCAGCAGCAGCGAGAGGACCTCTAATGGAGATGTCTGGACTGAGAAGGAACGGCCAGTTGGATCTGCACAATGCTGCCTCCCTAGCTTGGGACCATGCCGTAGCTTCGGTGACCGGAGGAAGAAGGCGCGTCCAGCCATAGTTGTATAA ATGGGTTCCTGTGTTTCAATCCATAGAAATTCCGATTCCGCTCTGAAATTCAGGCTCTCAATTGGGTCTAAAACGAATGAAATGGTAATTCCGCCGTCGCCGATCAAGGATAACAACGCCCTGATCAGCGGCGCTGGCGGTGCTGGCGGTGTTGACGGTGAAGGCGGTGTAGGCGGTGTTTTTGTCAAATCTCAGAGGTCTCCTTCTCAATTAGCAAAGATGAAGCGTTTTTCGATTCCCGAGGCTGGTTGGATTCGGATTGTGAAGATGATTTCTATAGTGTCAATGGTGTATTCGATTGCAATGGCTGCAGACTTCACCCCTTCACGAGGAAACACTCCGGTACACCCCAGCTTCTCCTCTGGTACTCCTCGAATCAACCAAGTTCATGTCATCGACAATCAAACTCCGATCGCCGTTCCCGAACCATCACCCACAGGAAAGAAGAAGCTAGCTGAACTATTCAGGGACAGCTCCAGAAAAGACAGTGACATACAAGCCAAACCAACTCTAAACGAACTCGCGTTACAGTCGAATCCCGAAAAGCCTCACGTGTCAAGAACAAACTCTGTATGCAGCAGCAGCGAGAGGACCTCTAATGGAGATGTCTGGACTGAGAAGGAACGGCCAGTTGGATCTGCACAATGCTGCCTCCCTAGCTTGGGACCATGCCGTAGCTTCGGTGACCGGAGGAAGAAGGCGCGTCCAGCCATAGTTGTATAA MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGEGGVGGVFVKSQRSPSQLAKMKRFSIPEAGWIRIVKMISIVSMVYSIAMAADFTPSRGNTPVHPSFSSGTPRINQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQSNPEKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKARPAIVV Homology
BLAST of CmoCh11G016270 vs. ExPASy Swiss-Prot
Match: Q9LK32 (Uncharacterized protein At3g27210 OS=Arabidopsis thaliana OX=3702 GN=Y-2 PE=1 SV=1) HSP 1 Score: 50.1 bits (118), Expect = 4.2e-05 Identity = 45/131 (34.35%), Postives = 59/131 (45.04%), Query Frame = 0
BLAST of CmoCh11G016270 vs. ExPASy TrEMBL
Match: A0A6J1EK04 (uncharacterized protein At3g27210-like OS=Cucurbita moschata OX=3662 GN=LOC111435186 PE=4 SV=1) HSP 1 Score: 407.5 bits (1046), Expect = 3.8e-110 Identity = 211/240 (87.92%), Postives = 213/240 (88.75%), Query Frame = 0
BLAST of CmoCh11G016270 vs. ExPASy TrEMBL
Match: A0A6J1JKY5 (uncharacterized protein At3g27210-like OS=Cucurbita maxima OX=3661 GN=LOC111486720 PE=4 SV=1) HSP 1 Score: 370.9 bits (951), Expect = 3.9e-99 Identity = 197/240 (82.08%), Postives = 200/240 (83.33%), Query Frame = 0
BLAST of CmoCh11G016270 vs. ExPASy TrEMBL
Match: A0A0A0LB55 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G588480 PE=4 SV=1) HSP 1 Score: 289.3 bits (739), Expect = 1.5e-74 Identity = 155/240 (64.58%), Postives = 170/240 (70.83%), Query Frame = 0
BLAST of CmoCh11G016270 vs. ExPASy TrEMBL
Match: A0A1S3BP47 (uncharacterized protein At3g27210-like OS=Cucumis melo OX=3656 GN=LOC103491777 PE=4 SV=1) HSP 1 Score: 287.3 bits (734), Expect = 5.7e-74 Identity = 155/240 (64.58%), Postives = 168/240 (70.00%), Query Frame = 0
BLAST of CmoCh11G016270 vs. ExPASy TrEMBL
Match: A0A6J1J5K2 (uncharacterized protein At3g27210-like OS=Cucurbita maxima OX=3661 GN=LOC111481493 PE=4 SV=1) HSP 1 Score: 280.0 bits (715), Expect = 9.1e-72 Identity = 154/240 (64.17%), Postives = 171/240 (71.25%), Query Frame = 0
BLAST of CmoCh11G016270 vs. NCBI nr
Match: XP_022928326.1 (uncharacterized protein At3g27210-like [Cucurbita moschata]) HSP 1 Score: 407.5 bits (1046), Expect = 7.8e-110 Identity = 211/240 (87.92%), Postives = 213/240 (88.75%), Query Frame = 0
BLAST of CmoCh11G016270 vs. NCBI nr
Match: KAG7022674.1 (hypothetical protein SDJN02_16408, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 391.0 bits (1003), Expect = 7.6e-105 Identity = 207/243 (85.19%), Postives = 209/243 (86.01%), Query Frame = 0
BLAST of CmoCh11G016270 vs. NCBI nr
Match: KAG6588909.1 (hypothetical protein SDJN03_17474, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 385.2 bits (988), Expect = 4.2e-103 Identity = 202/240 (84.17%), Postives = 204/240 (85.00%), Query Frame = 0
BLAST of CmoCh11G016270 vs. NCBI nr
Match: XP_022989721.1 (uncharacterized protein At3g27210-like [Cucurbita maxima]) HSP 1 Score: 370.9 bits (951), Expect = 8.1e-99 Identity = 197/240 (82.08%), Postives = 200/240 (83.33%), Query Frame = 0
BLAST of CmoCh11G016270 vs. NCBI nr
Match: XP_023530812.1 (uncharacterized protein At3g27210-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 369.0 bits (946), Expect = 3.1e-98 Identity = 197/240 (82.08%), Postives = 199/240 (82.92%), Query Frame = 0
BLAST of CmoCh11G016270 vs. TAIR 10
Match: AT3G27210.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40860.1); Has 133 Blast hits to 98 proteins in 25 species: Archae - 0; Bacteria - 6; Metazoa - 32; Fungi - 7; Plants - 70; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). ) HSP 1 Score: 50.1 bits (118), Expect = 3.0e-06 Identity = 45/131 (34.35%), Postives = 59/131 (45.04%), Query Frame = 0
BLAST of CmoCh11G016270 vs. TAIR 10
Match: AT3G01860.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 66 Blast hits to 66 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 48.1 bits (113), Expect = 1.1e-05 Identity = 43/138 (31.16%), Postives = 67/138 (48.55%), Query Frame = 0
BLAST of CmoCh11G016270 vs. TAIR 10
Match: AT3G01860.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 64 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 48.1 bits (113), Expect = 1.1e-05 Identity = 43/138 (31.16%), Postives = 67/138 (48.55%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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