CmoCh11G014220 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G014220
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	GATA type zinc finger transcription factor family protein
Location	Cmo_Chr11: 10025478 .. 10026504 (+)
RNA-Seq Expression	CmoCh11G014220
Synteny	CmoCh11G014220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAGCTTTTCAGGAACCACACAGAAGTGCATGGCTTGTGACAAGACTGTTTATCTTGTCGATAAGCTTACCGCCGATAATAGGGTCTTCCATAAGGCTTGCTTCCGATGCTACCATTGCAAGGGCACTCTCAAGGTGATTACACGTTCTCGTCAAGGTTCAAATCTTCATATTTCATTTTAATCTTTCGAACATGTTGGTTTTGCAGCTTAGCAACTATTGTTCGTTCGAGGGAGTGTTGTACTGCAGGCCTCACTATGATCAACTCTTCAAGAGAACTGGCAGCCTTGACAAAAGCTTTGAAGGCAATATTTCTTTATTTGCTTATAGTCGTTAAAATGTATTTTCTCGCTCACATTTTCTAAACTTTTTCTCCCAACATGACTCGAGACCCGAGAACATATGCCAAGGTTATTCATAACGTTTGAGTTACTCACGGCTCACTTGTTCACTTGGTTAGAATAAGTGCCGCACAATTGTTGTCCCCACTATCACATGATTGTGACCCAACTTTCAATGAATATTCTAGTTCTAAAATTTAATTTCCTCTTTGTCAGGAACTCCGAAAATCGTGAAGGTAGAAAAACCCACCGACAACGAGGTATAATTTCTTCGTTTTGTAATCTACTTTTTCGTGACTAAAACTAACATGCTTTTTTAACTATTAATAATGGATTGAGTTGGGTTGCATTGGATTATTGAACAGAAAGCGAATGCGAAGTCGAACCTATTTGCTGGAACCCGAGACAAATGTGCAGGGTGTACCAAGACGGTTTATCCCCTTGAAAAGGTAACGGTGAATGGGACGGCGTACCATAAGAGCTGCTTCAAGTGCAGCCATGGAGGGTGCACAATAAGCCCATCAAACTACATAGCACATGAGGGGAAGCTATACTGCAAGCACCACCACATTCAACTGTTCAAGGAGAAGGGCAATTACAGCCAGCTTGAAACTGAGCGCCAAAAGAGCAATGCAGTGGCAATGAAATTAGGTGCTTCACTGGAAATTGCAGCTGAATCATAG

mRNA sequence

ATGGCTAGCTTTTCAGGAACCACACAGAAGTGCATGGCTTGTGACAAGACTGTTTATCTTGTCGATAAGCTTACCGCCGATAATAGGGTCTTCCATAAGGCTTGCTTCCGATGCTACCATTGCAAGGGCACTCTCAAGCTTAGCAACTATTGTTCGTTCGAGGGAGTGTTGTACTGCAGGCCTCACTATGATCAACTCTTCAAGAGAACTGGCAGCCTTGACAAAAGCTTTGAAGGAACTCCGAAAATCGTGAAGGTAGAAAAACCCACCGACAACGAGAAAGCGAATGCGAAGTCGAACCTATTTGCTGGAACCCGAGACAAATGTGCAGGGTGTACCAAGACGGTTTATCCCCTTGAAAAGGTAACGGTGAATGGGACGGCGTACCATAAGAGCTGCTTCAAGTGCAGCCATGGAGGGTGCACAATAAGCCCATCAAACTACATAGCACATGAGGGGAAGCTATACTGCAAGCACCACCACATTCAACTGTTCAAGGAGAAGGGCAATTACAGCCAGCTTGAAACTGAGCGCCAAAAGAGCAATGCAGTGGCAATGAAATTAGGTGCTTCACTGGAAATTGCAGCTGAATCATAG

Coding sequence (CDS)

ATGGCTAGCTTTTCAGGAACCACACAGAAGTGCATGGCTTGTGACAAGACTGTTTATCTTGTCGATAAGCTTACCGCCGATAATAGGGTCTTCCATAAGGCTTGCTTCCGATGCTACCATTGCAAGGGCACTCTCAAGCTTAGCAACTATTGTTCGTTCGAGGGAGTGTTGTACTGCAGGCCTCACTATGATCAACTCTTCAAGAGAACTGGCAGCCTTGACAAAAGCTTTGAAGGAACTCCGAAAATCGTGAAGGTAGAAAAACCCACCGACAACGAGAAAGCGAATGCGAAGTCGAACCTATTTGCTGGAACCCGAGACAAATGTGCAGGGTGTACCAAGACGGTTTATCCCCTTGAAAAGGTAACGGTGAATGGGACGGCGTACCATAAGAGCTGCTTCAAGTGCAGCCATGGAGGGTGCACAATAAGCCCATCAAACTACATAGCACATGAGGGGAAGCTATACTGCAAGCACCACCACATTCAACTGTTCAAGGAGAAGGGCAATTACAGCCAGCTTGAAACTGAGCGCCAAAAGAGCAATGCAGTGGCAATGAAATTAGGTGCTTCACTGGAAATTGCAGCTGAATCATAG

Protein sequence

MASFSGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEGTPKIVKVEKPTDNEKANAKSNLFAGTRDKCAGCTKTVYPLEKVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKSNAVAMKLGASLEIAAES

Homology

[Close]

BLAST of CmoCh11G014220 vs. ExPASy Swiss-Prot
Match: Q94JX5 (LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=1 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 1.7e-84
Identity = 144/175 (82.29%), Postives = 159/175 (90.86%), Query Frame = 0


Query: 3   SFSGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPH 62
           +F+GTTQKCMACDKTVYLVDKLTADNRV+HKACFRC+HCKGTLKLSNY SFEGVLYCRPH
Sbjct: 2   AFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPH 61

Query: 63  YDQLFKRTGSLDKSFEGTPKIVKVEKPTDNEK-ANAK-SNLFAGTRDKCAGCTKTVYPLE 122
           +DQ FKRTGSL+KSFEGTPKI K ++P + E+ A  K SN+F GTR+KC GC KTVYP+E
Sbjct: 62  FDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPIE 121

Query: 123 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE 176
           KV+VNGT YHKSCFKC+HGGCTISPSNYIAHEGKLYCKHHHIQL KEKGN SQLE
Sbjct: 122 KVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLE 176

[Close]

BLAST of CmoCh11G014220 vs. ExPASy Swiss-Prot
Match: P29675 (Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 5.4e-75
Identity = 128/179 (71.51%), Postives = 150/179 (83.80%), Query Frame = 0


Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCR 60
           M SF+GTTQKC  C+KTVYLVDKL A+ RV+HKACFRC+HC  TLKLSN+ SF+GV+YCR
Sbjct: 1   MKSFTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCR 60

Query: 61  PHYDQLFKRTGSLDKSFEGTPKIVKVEK--PTDNEKANAKSNLFAGTRDKCAGCTKTVYP 120
            H+DQLFKRTGSL+KSF+GTPK  K E+    + + AN  S+ F GTRDKC  C K VYP
Sbjct: 61  HHFDQLFKRTGSLEKSFDGTPKF-KPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYP 120

Query: 121 LEKVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETE 178
           +E+V V+GTAYH++CFKC HGGCTISPSNYIAHEG+LYCKHHHIQLFK+KGNYSQLE E
Sbjct: 121 IERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLEVE 178

[Close]

BLAST of CmoCh11G014220 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 6.8e-62
Identity = 114/196 (58.16%), Postives = 139/196 (70.92%), Query Frame = 0


Query: 3   SFSGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPH 62
           SF+GT QKC AC+KTVY V+ L+AD   +HKACF+C HCK  L+LSNY S EGV+YCRPH
Sbjct: 2   SFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPH 61

Query: 63  YDQLFKRTGSLDKSFEGTPKIVKVEKPTD--NEKANAKSNLFAGTRDKCAGCTKTVYPLE 122
           ++QLFK +GS  K+F+   K +  +KPT   N   +  + +F+GT+DKCA CTKTVYP+E
Sbjct: 62  FEQLFKESGSFSKNFQSPAKPL-TDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 121

Query: 123 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 182
           KVTV    YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L      
Sbjct: 122 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 181

Query: 183 SNAVAMKLGASLEIAA 197
             A A    A+  +AA
Sbjct: 182 KRATAAATAAAAAVAA 196

[Close]

BLAST of CmoCh11G014220 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 7.0e-59
Identity = 108/198 (54.55%), Postives = 136/198 (68.69%), Query Frame = 0


Query: 3   SFSGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPH 62
           SF+GT QKC AC+KTVY V+ L+AD   +HK+CF+C HCK  L+LS+Y S EGVLYC+PH
Sbjct: 2   SFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPH 61

Query: 63  YDQLFKRTGSLDKSFEGTPKIVKVEKPTDNEKANAKSNLFAGTRDKCAGCTKTVYPLEKV 122
           ++QLFK +GS +K+F+   K      P      +  +  F+GT++KCA C+KTVYP+EKV
Sbjct: 62  FEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEKV 121

Query: 123 TVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQL--ETERQK 182
           TV    YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L      ++
Sbjct: 122 TVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKR 181

Query: 183 SNAVAMKLGASLEIAAES 199
           S A A+  G       ES
Sbjct: 182 SAAAAVAAGVPAASVPES 199

[Close]

BLAST of CmoCh11G014220 vs. ExPASy Swiss-Prot
Match: Q500W4 (LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana OX=3702 GN=PLIM2C PE=1 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.1e-54
Identity = 96/175 (54.86%), Postives = 128/175 (73.14%), Query Frame = 0


Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCR 60
           MA+F+GTT KC ACDKTVY++D +T +   +HK+CFRC HC GTL + NY S +GVLYC+
Sbjct: 1   MAAFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCK 60

Query: 61  PHYDQLFKRTGSLDKSFEGTPKIVKVEKPTDNEKA-NAKSNLFAGTRDKCAGCTKTVYPL 120
            H++QLFK +G+  K+F+      K EK  D  KA N  S+ F+GT+DKCA C KTVYPL
Sbjct: 61  THFEQLFKESGNFSKNFQTAG---KTEKSNDATKAPNRLSSFFSGTQDKCAACKKTVYPL 120

Query: 121 EKVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQL 175
           EK+T+ G +YHK+CF+C+H GC ++ S+Y A +G LYCK H  QLF EKGNY+ +
Sbjct: 121 EKMTMEGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFLEKGNYNHV 172

[Close]

BLAST of CmoCh11G014220 vs. ExPASy TrEMBL
Match: A0A6J1EIM6 (LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111434484 PE=4 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 3.9e-113
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCR 60
           MASFSGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCR
Sbjct: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCR 60

Query: 61  PHYDQLFKRTGSLDKSFEGTPKIVKVEKPTDNEKANAKSNLFAGTRDKCAGCTKTVYPLE 120
           PHYDQLFKRTGSLDKSFEGTPKIVKVEKPTDNEKANAKSNLFAGTRDKCAGCTKTVYPLE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKIVKVEKPTDNEKANAKSNLFAGTRDKCAGCTKTVYPLE 120

Query: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180
           KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK
Sbjct: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180

Query: 181 SNAVAMKLGASLEIAAES 199
           SNAVAMKLGASLEIAAES
Sbjct: 181 SNAVAMKLGASLEIAAES 198

[Close]

BLAST of CmoCh11G014220 vs. ExPASy TrEMBL
Match: A0A6J1JIN6 (LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC111486161 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.1e-112
Identity = 196/198 (98.99%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCR 60
           MASFSGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCR
Sbjct: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCR 60

Query: 61  PHYDQLFKRTGSLDKSFEGTPKIVKVEKPTDNEKANAKSNLFAGTRDKCAGCTKTVYPLE 120
           PHYDQLFKRTGSLDKSFEGTPKIVK+EKPTDNEKANAKSNLFAGTRDKCAGCTKTVYPLE
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKIVKIEKPTDNEKANAKSNLFAGTRDKCAGCTKTVYPLE 120

Query: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180
           KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK
Sbjct: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180

Query: 181 SNAVAMKLGASLEIAAES 199
           SN+VAMKLGASLEIAAES
Sbjct: 181 SNSVAMKLGASLEIAAES 198

[Close]

BLAST of CmoCh11G014220 vs. ExPASy TrEMBL
Match: A0A5A7SP97 (LIM domain protein GLIM1a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001270 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 1.7e-100
Identity = 174/201 (86.57%), Postives = 188/201 (93.53%), Query Frame = 0


Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCR 60
           MASF+GTTQKCMAC+KTVYLVDKLTADNRVFHK CFRCYHC+GTLKLSNYCSFEGVLYCR
Sbjct: 1   MASFAGTTQKCMACEKTVYLVDKLTADNRVFHKVCFRCYHCRGTLKLSNYCSFEGVLYCR 60

Query: 61  PHYDQLFKRTGSLDKSFEGTPKIVKVEKPTDNEKANAKSNLFAGTRDKCAGCTKTVYPLE 120
           PHYDQLFKRTGSLDKSFEGTPK++K EKP++NE A + SN+F GTRDKC+GCTKTVYP+E
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKLMKPEKPSENENAKSVSNMFGGTRDKCSGCTKTVYPIE 120

Query: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180
           KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK
Sbjct: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180

Query: 181 SN---AVAMKLGASLEIAAES 199
           +N   A A+KL   +EIAAES
Sbjct: 181 NNSAVAAAIKLTTPMEIAAES 201

[Close]

BLAST of CmoCh11G014220 vs. ExPASy TrEMBL
Match: A0A6J1GLG2 (LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111455348 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 3.2e-99
Identity = 173/201 (86.07%), Postives = 183/201 (91.04%), Query Frame = 0


Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCR 60
           MASF+GTTQKCMACDKTVYLVDKLTADNR+FHK CFRCYHCKGTLKLSNYCSFEGVLYCR
Sbjct: 1   MASFAGTTQKCMACDKTVYLVDKLTADNRIFHKPCFRCYHCKGTLKLSNYCSFEGVLYCR 60

Query: 61  PHYDQLFKRTGSLDKSFEGTPKIVKVEKPTDNEKANAKSNLFAGTRDKCAGCTKTVYPLE 120
           PHYDQLFKRTGSLDKSFEGTPKI K EKPT+NE A + S++F GTRDKCAGC KTVYP+E
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPKITKPEKPTENENAKSVSSMFGGTRDKCAGCIKTVYPIE 120

Query: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180
           KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK
Sbjct: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180

Query: 181 SNAV---AMKLGASLEIAAES 199
            N+V    +     +EIAAES
Sbjct: 181 ENSVPINTLNANNPMEIAAES 201

[Close]

BLAST of CmoCh11G014220 vs. ExPASy TrEMBL
Match: A0A6J1D4V0 (LIM domain-containing protein WLIM1-like OS=Momordica charantia OX=3673 GN=LOC111017319 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 1.6e-98
Identity = 174/198 (87.88%), Postives = 186/198 (93.94%), Query Frame = 0


Query: 1   MASFSGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCR 60
           MASFSGTTQKCMAC+KTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCR
Sbjct: 1   MASFSGTTQKCMACEKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCR 60

Query: 61  PHYDQLFKRTGSLDKSFEGTPKIVKVEKPTDNEKANAKSNLFAGTRDKCAGCTKTVYPLE 120
           PHYDQLFKRTGSLDKSFEGTPK VK EKPT+ E A + SN+F GTRDKC+GCTKTVYP+E
Sbjct: 61  PHYDQLFKRTGSLDKSFEGTPK-VKPEKPTETENAKSVSNMFGGTRDKCSGCTKTVYPIE 120

Query: 121 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 180
           KVTVNGTAYHK+CFKC+HGGCTISPSNYIAHEGKLYCKHHHIQLF EKGNYSQLETERQK
Sbjct: 121 KVTVNGTAYHKTCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLFMEKGNYSQLETERQK 180

Query: 181 SNAVAMKLGASLEIAAES 199
            N+V+M L + +EIAAES
Sbjct: 181 -NSVSMNLTSPVEIAAES 196

[Close]

BLAST of CmoCh11G014220 vs. TAIR 10
Match: AT1G10200.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 313.5 bits (802), Expect = 1.2e-85
Identity = 144/175 (82.29%), Postives = 159/175 (90.86%), Query Frame = 0


Query: 3   SFSGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPH 62
           +F+GTTQKCMACDKTVYLVDKLTADNRV+HKACFRC+HCKGTLKLSNY SFEGVLYCRPH
Sbjct: 2   AFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPH 61

Query: 63  YDQLFKRTGSLDKSFEGTPKIVKVEKPTDNEK-ANAK-SNLFAGTRDKCAGCTKTVYPLE 122
           +DQ FKRTGSL+KSFEGTPKI K ++P + E+ A  K SN+F GTR+KC GC KTVYP+E
Sbjct: 62  FDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPIE 121

Query: 123 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE 176
           KV+VNGT YHKSCFKC+HGGCTISPSNYIAHEGKLYCKHHHIQL KEKGN SQLE
Sbjct: 122 KVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLE 176

[Close]

BLAST of CmoCh11G014220 vs. TAIR 10
Match: AT2G39900.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 238.4 bits (607), Expect = 4.8e-63
Identity = 114/196 (58.16%), Postives = 139/196 (70.92%), Query Frame = 0


Query: 3   SFSGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPH 62
           SF+GT QKC AC+KTVY V+ L+AD   +HKACF+C HCK  L+LSNY S EGV+YCRPH
Sbjct: 2   SFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPH 61

Query: 63  YDQLFKRTGSLDKSFEGTPKIVKVEKPTD--NEKANAKSNLFAGTRDKCAGCTKTVYPLE 122
           ++QLFK +GS  K+F+   K +  +KPT   N   +  + +F+GT+DKCA CTKTVYP+E
Sbjct: 62  FEQLFKESGSFSKNFQSPAKPL-TDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 121

Query: 123 KVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQK 182
           KVTV    YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L      
Sbjct: 122 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 181

Query: 183 SNAVAMKLGASLEIAA 197
             A A    A+  +AA
Sbjct: 182 KRATAAATAAAAAVAA 196

[Close]

BLAST of CmoCh11G014220 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 228.4 bits (581), Expect = 5.0e-60
Identity = 108/198 (54.55%), Postives = 136/198 (68.69%), Query Frame = 0


Query: 3   SFSGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPH 62
           SF+GT QKC AC+KTVY V+ L+AD   +HK+CF+C HCK  L+LS+Y S EGVLYC+PH
Sbjct: 2   SFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPH 61

Query: 63  YDQLFKRTGSLDKSFEGTPKIVKVEKPTDNEKANAKSNLFAGTRDKCAGCTKTVYPLEKV 122
           ++QLFK +GS +K+F+   K      P      +  +  F+GT++KCA C+KTVYP+EKV
Sbjct: 62  FEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEKV 121

Query: 123 TVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQL--ETERQK 182
           TV    YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L      ++
Sbjct: 122 TVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKR 181

Query: 183 SNAVAMKLGASLEIAAES 199
           S A A+  G       ES
Sbjct: 182 SAAAAVAAGVPAASVPES 199

[Close]

BLAST of CmoCh11G014220 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 228.4 bits (581), Expect = 5.0e-60
Identity = 108/198 (54.55%), Postives = 136/198 (68.69%), Query Frame = 0


Query: 3   SFSGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPH 62
           SF+GT QKC AC+KTVY V+ L+AD   +HK+CF+C HCK  L+LS+Y S EGVLYC+PH
Sbjct: 2   SFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPH 61

Query: 63  YDQLFKRTGSLDKSFEGTPKIVKVEKPTDNEKANAKSNLFAGTRDKCAGCTKTVYPLEKV 122
           ++QLFK +GS +K+F+   K      P      +  +  F+GT++KCA C+KTVYP+EKV
Sbjct: 62  FEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEKV 121

Query: 123 TVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQL--ETERQK 182
           TV    YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L      ++
Sbjct: 122 TVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKR 181

Query: 183 SNAVAMKLGASLEIAAES 199
           S A A+  G       ES
Sbjct: 182 SAAAAVAAGVPAASVPES 199

[Close]

BLAST of CmoCh11G014220 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 228.4 bits (581), Expect = 5.0e-60
Identity = 108/198 (54.55%), Postives = 136/198 (68.69%), Query Frame = 0


Query: 3   SFSGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPH 62
           SF+GT QKC AC+KTVY V+ L+AD   +HK+CF+C HCK  L+LS+Y S EGVLYC+PH
Sbjct: 2   SFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPH 61

Query: 63  YDQLFKRTGSLDKSFEGTPKIVKVEKPTDNEKANAKSNLFAGTRDKCAGCTKTVYPLEKV 122
           ++QLFK +GS +K+F+   K      P      +  +  F+GT++KCA C+KTVYP+EKV
Sbjct: 62  FEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEKV 121

Query: 123 TVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQL--ETERQK 182
           TV    YHKSCFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ L      ++
Sbjct: 122 TVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKR 181

Query: 183 SNAVAMKLGASLEIAAES 199
           S A A+  G       ES
Sbjct: 182 SAAAAVAAGVPAASVPES 199

The following BLAST results are available for this feature:

BLAST of CmoCh11G014220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JX5	1.7e-84	82.29	LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=...	[more]
P29675	5.4e-75	71.51	Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1	[more]
O04193	6.8e-62	58.16	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
Q9M047	7.0e-59	54.55	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
Q500W4	1.1e-54	54.86	LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana OX=3702 GN=PLIM2C P...	[more]

BLAST of CmoCh11G014220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EIM6	3.9e-113	100.00	LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1JIN6	1.1e-112	98.99	LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A5A7SP97	1.7e-100	86.57	LIM domain protein GLIM1a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1GLG2	3.2e-99	86.07	LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1D4V0	1.6e-98	87.88	LIM domain-containing protein WLIM1-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of CmoCh11G014220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10200.1	1.2e-85	82.29	GATA type zinc finger transcription factor family protein	[more]
AT2G39900.1	4.8e-63	58.16	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.1	5.0e-60	54.55	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.2	5.0e-60	54.55	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.3	5.0e-60	54.55	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 10..62 e-value: 6.3E-11 score: 52.3 coord: 108..160 e-value: 3.2E-15 score: 66.6
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 11..65 e-value: 5.9E-10 score: 39.2 coord: 109..164 e-value: 1.1E-12 score: 47.9
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 11..45
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 107..167 score: 12.9394
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 9..69 score: 13.2364
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 103..173 e-value: 1.7E-20 score: 74.9 coord: 5..75 e-value: 4.5E-19 score: 70.4
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 1..186
None	No IPR available	PANTHER	PTHR24206:SF35	LIM DOMAIN-CONTAINING PROTEIN WLIM1	coord: 1..186
None	No IPR available	CDD	cd09441	LIM2_SF3	coord: 109..169 e-value: 5.41551E-39 score: 126.431
None	No IPR available	CDD	cd09440	LIM1_SF3	coord: 7..69 e-value: 9.40706E-38 score: 123.344
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 135..174
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 4..36
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 101..134
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 37..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G014220.1	CmoCh11G014220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding