CmoCh11G012620 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G012620
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	methyl-CpG-binding domain protein 4-like protein
Location	Cmo_Chr11: 8059926 .. 8061430 (+)
RNA-Seq Expression	CmoCh11G012620
Synteny	CmoCh11G012620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTCGGTTCAATGCACTTCCTTTTCGGCAGCCGCCATGACTGCAACTACAATCATGAACCCTAATCTCTCCCCTCCCTCCTCATCTTCATTTCCCGATTTCTTGTTTTCCCAATTCGCCTTTCAAGGTTGTTCCTCTTCCAGATTTCGCTTTCCTCCTTCCAAATGCCCCTCCGAGTCGAATCGTCAAAACCCCACGCCGGAGGATTTTACCCAAAAGAGGACCACTCTCATGGCGCAAAACTCTCCGATTTCGACTCTTGAGGTTCTCCAAACCTCTGAATCGAATCATCAGAAGACAGCCGCAGGGCAAGAGATTCCGATTTTGTGTATTGAGGACCTTCAGGATAACCCGAAGCGTGGGAGTTCCACATTAACCGTAGAGGATGTTCAAGAAGTTTCACCGAAGACCCCAACTTCTGAAAGGGAAAGGGTTTTAGTGCATGAGCCTCCTATATTAACTCTAGAGGATATTCAAAATGCAAAATCGGACCATCAACCGGCGATAGAGCCTCCATTGGCTCGTAGGGTTTTACGGTTTTACCGGCAGTTTGGGTTTGATGAACAAATAGTGCAAAAAACCCCACCTTCTGTCCGAAATTCCATGCCAGTTCAACGAGATGAACGTGTAGTTTCGCGTCATTTCCAGGAATCAAAATCAAACCAACAAGGAGAACGAATTGTATCACGCTATTTTCAACACTCGGAAATAGAACGAGCAGCCCATAATGAGGATGAGGATGAGGATGAGGATGTCAATGTCACAGATCAACCAATTAAAAGATCAAGGGTCGGACAATACAGAAAAAGGAGGAGGAAAGACGTAGCTTCTAGCTCCGATAATTCAAAAGCATATCAACGTTCAATCAGAAAATCCTCACGTTTTGTTAAAGAATCGGGAACGGATAAACGAGTGCGATTTGTTTCCCGCTATTTTCAAAATTCAGAAAAGAATCCTGAAGTGGAGATTGAAGTTTCACCTCCATTACAAAATTCAAAAACAAAACAACAAGGAGAGCGCATAGTCTCACGTTTCTTTCAAAAATCAGAAGAACAAGAAGTAGTGAACAATCAACAAGAGGTTATACAGCTTCCAAGTCAGTGTGCAAAATCTGTTAAAAGAATCCGTAAACCAGCCAAGGAAAGAAAAGTGAGGGATAAAGTTTCTGCTAGGCCTAGAACCACTCTTTCGGCTGACGAGTTGTTTCTGGAAGCTTATAGAAGAAAATCGTCAGATGATACATGGAAACCTCCTCCCTCTGGAATTCGCCTTCTCCAACAGGATCATGCTTACGACCCTTGGAGGGTTCTTGTCATATGTATGCTCCTTAACCGGACGACTGGGCAGCAGGTATTCACTTGATCTTGAATGCAATTTCCAATTTCATACTGTACTATATCTTTCCCCATGGCACATAAACTTGATTTGCTTTCATTACAGTTTTGCCACTCCACGGCTTTGCCGCAGGACTGGGTTTTCATAAATGAACTTCAACAATATCCTTGA

mRNA sequence

AGTCGGTTCAATGCACTTCCTTTTCGGCAGCCGCCATGACTGCAACTACAATCATGAACCCTAATCTCTCCCCTCCCTCCTCATCTTCATTTCCCGATTTCTTGTTTTCCCAATTCGCCTTTCAAGGTTGTTCCTCTTCCAGATTTCGCTTTCCTCCTTCCAAATGCCCCTCCGAGTCGAATCGTCAAAACCCCACGCCGGAGGATTTTACCCAAAAGAGGACCACTCTCATGGCGCAAAACTCTCCGATTTCGACTCTTGAGGTTCTCCAAACCTCTGAATCGAATCATCAGAAGACAGCCGCAGGGCAAGAGATTCCGATTTTGTGTATTGAGGACCTTCAGGATAACCCGAAGCGTGGGAGTTCCACATTAACCGTAGAGGATGTTCAAGAAGTTTCACCGAAGACCCCAACTTCTGAAAGGGAAAGGGTTTTAGTGCATGAGCCTCCTATATTAACTCTAGAGGATATTCAAAATGCAAAATCGGACCATCAACCGGCGATAGAGCCTCCATTGGCTCGTAGGGTTTTACGGTTTTACCGGCAGTTTGGGTTTGATGAACAAATAGTGCAAAAAACCCCACCTTCTGTCCGAAATTCCATGCCAGTTCAACGAGATGAACGTGTAGTTTCGCGTCATTTCCAGGAATCAAAATCAAACCAACAAGGAGAACGAATTGTATCACGCTATTTTCAACACTCGGAAATAGAACGAGCAGCCCATAATGAGGATGAGGATGAGGATGAGGATGTCAATGTCACAGATCAACCAATTAAAAGATCAAGGGTCGGACAATACAGAAAAAGGAGGAGGAAAGACGTAGCTTCTAGCTCCGATAATTCAAAAGCATATCAACGTTCAATCAGAAAATCCTCACGTTTTGTTAAAGAATCGGGAACGGATAAACGAGTGCGATTTGTTTCCCGCTATTTTCAAAATTCAGAAAAGAATCCTGAAGTGGAGATTGAAGTTTCACCTCCATTACAAAATTCAAAAACAAAACAACAAGGAGAGCGCATAGTCTCACGTTTCTTTCAAAAATCAGAAGAACAAGAAGTAGTGAACAATCAACAAGAGGTTATACAGCTTCCAAGTCAGTGTGCAAAATCTGTTAAAAGAATCCGTAAACCAGCCAAGGAAAGAAAAGTGAGGGATAAAGTTTCTGCTAGGCCTAGAACCACTCTTTCGGCTGACGAGTTGTTTCTGGAAGCTTATAGAAGAAAATCGTCAGATGATACATGGAAACCTCCTCCCTCTGGAATTCGCCTTCTCCAACAGGATCATGCTTACGACCCTTGGAGGGTTCTTGTCATATGTATGCTCCTTAACCGGACGACTGGGCAGCAGTTTTGCCACTCCACGGCTTTGCCGCAGGACTGGGTTTTCATAAATGAACTTCAACAATATCCTTGA

Coding sequence (CDS)

ATGACTGCAACTACAATCATGAACCCTAATCTCTCCCCTCCCTCCTCATCTTCATTTCCCGATTTCTTGTTTTCCCAATTCGCCTTTCAAGGTTGTTCCTCTTCCAGATTTCGCTTTCCTCCTTCCAAATGCCCCTCCGAGTCGAATCGTCAAAACCCCACGCCGGAGGATTTTACCCAAAAGAGGACCACTCTCATGGCGCAAAACTCTCCGATTTCGACTCTTGAGGTTCTCCAAACCTCTGAATCGAATCATCAGAAGACAGCCGCAGGGCAAGAGATTCCGATTTTGTGTATTGAGGACCTTCAGGATAACCCGAAGCGTGGGAGTTCCACATTAACCGTAGAGGATGTTCAAGAAGTTTCACCGAAGACCCCAACTTCTGAAAGGGAAAGGGTTTTAGTGCATGAGCCTCCTATATTAACTCTAGAGGATATTCAAAATGCAAAATCGGACCATCAACCGGCGATAGAGCCTCCATTGGCTCGTAGGGTTTTACGGTTTTACCGGCAGTTTGGGTTTGATGAACAAATAGTGCAAAAAACCCCACCTTCTGTCCGAAATTCCATGCCAGTTCAACGAGATGAACGTGTAGTTTCGCGTCATTTCCAGGAATCAAAATCAAACCAACAAGGAGAACGAATTGTATCACGCTATTTTCAACACTCGGAAATAGAACGAGCAGCCCATAATGAGGATGAGGATGAGGATGAGGATGTCAATGTCACAGATCAACCAATTAAAAGATCAAGGGTCGGACAATACAGAAAAAGGAGGAGGAAAGACGTAGCTTCTAGCTCCGATAATTCAAAAGCATATCAACGTTCAATCAGAAAATCCTCACGTTTTGTTAAAGAATCGGGAACGGATAAACGAGTGCGATTTGTTTCCCGCTATTTTCAAAATTCAGAAAAGAATCCTGAAGTGGAGATTGAAGTTTCACCTCCATTACAAAATTCAAAAACAAAACAACAAGGAGAGCGCATAGTCTCACGTTTCTTTCAAAAATCAGAAGAACAAGAAGTAGTGAACAATCAACAAGAGGTTATACAGCTTCCAAGTCAGTGTGCAAAATCTGTTAAAAGAATCCGTAAACCAGCCAAGGAAAGAAAAGTGAGGGATAAAGTTTCTGCTAGGCCTAGAACCACTCTTTCGGCTGACGAGTTGTTTCTGGAAGCTTATAGAAGAAAATCGTCAGATGATACATGGAAACCTCCTCCCTCTGGAATTCGCCTTCTCCAACAGGATCATGCTTACGACCCTTGGAGGGTTCTTGTCATATGTATGCTCCTTAACCGGACGACTGGGCAGCAGTTTTGCCACTCCACGGCTTTGCCGCAGGACTGGGTTTTCATAAATGAACTTCAACAATATCCTTGA

Protein sequence

MTATTIMNPNLSPPSSSSFPDFLFSQFAFQGCSSSRFRFPPSKCPSESNRQNPTPEDFTQKRTTLMAQNSPISTLEVLQTSESNHQKTAAGQEIPILCIEDLQDNPKRGSSTLTVEDVQEVSPKTPTSERERVLVHEPPILTLEDIQNAKSDHQPAIEPPLARRVLRFYRQFGFDEQIVQKTPPSVRNSMPVQRDERVVSRHFQESKSNQQGERIVSRYFQHSEIERAAHNEDEDEDEDVNVTDQPIKRSRVGQYRKRRRKDVASSSDNSKAYQRSIRKSSRFVKESGTDKRVRFVSRYFQNSEKNPEVEIEVSPPLQNSKTKQQGERIVSRFFQKSEEQEVVNNQQEVIQLPSQCAKSVKRIRKPAKERKVRDKVSARPRTTLSADELFLEAYRRKSSDDTWKPPPSGIRLLQQDHAYDPWRVLVICMLLNRTTGQQFCHSTALPQDWVFINELQQYP

Homology

[Close]

BLAST of CmoCh11G012620 vs. ExPASy Swiss-Prot
Match: Q0IGK1 (Methyl-CpG-binding domain protein 4-like protein OS=Arabidopsis thaliana OX=3702 GN=MBD4L PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.7e-11
Identity = 67/221 (30.32%), Postives = 106/221 (47.96%), Query Frame = 0


Query: 236 EDEDVNVTDQPIKRSRVGQY--RKRRRKDVASSSDNSKAYQRSIRKSSRFVKE--SGTDK 295
           +D+D +V+D  I+R    ++    RR       S  S+  +      S   KE  S    
Sbjct: 123 DDDDDSVSDSHIERQECSEFHVEVRRVSPYFQGSTVSQQSKEGCDSDSVCSKEGCSKVQA 182

Query: 296 RVRFVSRYFQNSEKNPEVEIEVSPPLQNSKTKQQGE-------RIVSRFFQKSEEQEVVN 355
           +V  VS YFQ S  + + + ++    Q+ +  ++G        R VS +FQ+S   E  N
Sbjct: 183 KVPRVSPYFQASTIS-QCDSDIVSSSQSGRNYRKGSSKRQVKVRRVSPYFQESTVSEQPN 242

Query: 356 -------NQQEVIQLPSQCAKSVKRIRKPAKERKVRDKVSARPRTTLSADELFLEAYRRK 415
                  N  +V+++         ++ +  KE+    + +      LS  +   + Y RK
Sbjct: 243 QAPKGLRNYFKVVKVSRYFHADGIQVNESQKEKSRNVRKTPIVSPVLSLSQKTDDVYLRK 302

Query: 416 SSDDTWKPPPSGIRLLQQDHAYDPWRVLVICMLLNRTTGQQ 439
           + D+TW PP S   LLQ+DH +DPWRVLVICMLLN+T+G Q
Sbjct: 303 TPDNTWVPPRSPCNLLQEDHWHDPWRVLVICMLLNKTSGAQ 342

[Close]

BLAST of CmoCh11G012620 vs. ExPASy TrEMBL
Match: A0A6J1EZJ4 (methyl-CpG-binding domain protein 4-like protein OS=Cucurbita moschata OX=3662 GN=LOC111437878 PE=4 SV=1)

HSP 1 Score: 840.1 bits (2169), Expect = 4.4e-240
Identity = 438/438 (100.00%), Postives = 438/438 (100.00%), Query Frame = 0


Query: 1   MTATTIMNPNLSPPSSSSFPDFLFSQFAFQGCSSSRFRFPPSKCPSESNRQNPTPEDFTQ 60
           MTATTIMNPNLSPPSSSSFPDFLFSQFAFQGCSSSRFRFPPSKCPSESNRQNPTPEDFTQ
Sbjct: 1   MTATTIMNPNLSPPSSSSFPDFLFSQFAFQGCSSSRFRFPPSKCPSESNRQNPTPEDFTQ 60

Query: 61  KRTTLMAQNSPISTLEVLQTSESNHQKTAAGQEIPILCIEDLQDNPKRGSSTLTVEDVQE 120
           KRTTLMAQNSPISTLEVLQTSESNHQKTAAGQEIPILCIEDLQDNPKRGSSTLTVEDVQE
Sbjct: 61  KRTTLMAQNSPISTLEVLQTSESNHQKTAAGQEIPILCIEDLQDNPKRGSSTLTVEDVQE 120

Query: 121 VSPKTPTSERERVLVHEPPILTLEDIQNAKSDHQPAIEPPLARRVLRFYRQFGFDEQIVQ 180
           VSPKTPTSERERVLVHEPPILTLEDIQNAKSDHQPAIEPPLARRVLRFYRQFGFDEQIVQ
Sbjct: 121 VSPKTPTSERERVLVHEPPILTLEDIQNAKSDHQPAIEPPLARRVLRFYRQFGFDEQIVQ 180

Query: 181 KTPPSVRNSMPVQRDERVVSRHFQESKSNQQGERIVSRYFQHSEIERAAHNEDEDEDEDV 240
           KTPPSVRNSMPVQRDERVVSRHFQESKSNQQGERIVSRYFQHSEIERAAHNEDEDEDEDV
Sbjct: 181 KTPPSVRNSMPVQRDERVVSRHFQESKSNQQGERIVSRYFQHSEIERAAHNEDEDEDEDV 240

Query: 241 NVTDQPIKRSRVGQYRKRRRKDVASSSDNSKAYQRSIRKSSRFVKESGTDKRVRFVSRYF 300
           NVTDQPIKRSRVGQYRKRRRKDVASSSDNSKAYQRSIRKSSRFVKESGTDKRVRFVSRYF
Sbjct: 241 NVTDQPIKRSRVGQYRKRRRKDVASSSDNSKAYQRSIRKSSRFVKESGTDKRVRFVSRYF 300

Query: 301 QNSEKNPEVEIEVSPPLQNSKTKQQGERIVSRFFQKSEEQEVVNNQQEVIQLPSQCAKSV 360
           QNSEKNPEVEIEVSPPLQNSKTKQQGERIVSRFFQKSEEQEVVNNQQEVIQLPSQCAKSV
Sbjct: 301 QNSEKNPEVEIEVSPPLQNSKTKQQGERIVSRFFQKSEEQEVVNNQQEVIQLPSQCAKSV 360

Query: 361 KRIRKPAKERKVRDKVSARPRTTLSADELFLEAYRRKSSDDTWKPPPSGIRLLQQDHAYD 420
           KRIRKPAKERKVRDKVSARPRTTLSADELFLEAYRRKSSDDTWKPPPSGIRLLQQDHAYD
Sbjct: 361 KRIRKPAKERKVRDKVSARPRTTLSADELFLEAYRRKSSDDTWKPPPSGIRLLQQDHAYD 420

Query: 421 PWRVLVICMLLNRTTGQQ 439
           PWRVLVICMLLNRTTGQQ
Sbjct: 421 PWRVLVICMLLNRTTGQQ 438

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BLAST of CmoCh11G012620 vs. ExPASy TrEMBL
Match: A0A6J1HY54 (methyl-CpG-binding domain protein 4-like protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468538 PE=4 SV=1)

HSP 1 Score: 676.4 bits (1744), Expect = 8.4e-191
Identity = 355/382 (92.93%), Postives = 365/382 (95.55%), Query Frame = 0


Query: 66  MAQNSPISTLEVLQTSESNHQKTAAGQEIPILCIEDLQDNPKRGSSTLTVEDVQEVSPKT 125
           MA NSPISTLEVLQTSE+NHQKTAAG EIPILCIE LQD+PKR  STLTVEDVQEVSPKT
Sbjct: 1   MALNSPISTLEVLQTSEANHQKTAAGHEIPILCIEYLQDDPKREISTLTVEDVQEVSPKT 60

Query: 126 PTSERERVLVHEPPILTLEDIQNAKSDHQPAIEPPLARRVLRFYRQFGFDEQIVQKTPPS 185
           PTSERERVL HEPPILTLED+QNAKSDHQPAI+PPLARRVLRF RQFGFDEQIVQKTPPS
Sbjct: 61  PTSERERVLAHEPPILTLEDLQNAKSDHQPAIKPPLARRVLRFCRQFGFDEQIVQKTPPS 120

Query: 186 VRNSMPVQRDERVVSRHFQESKSNQQGERIVSRYFQHSEIERAAHNEDEDEDEDVNVTDQ 245
           VRNSMPVQRDERVVSRHFQESKSNQQGERIVSRYFQHSEIERAAHN  EDED+DVNVTDQ
Sbjct: 121 VRNSMPVQRDERVVSRHFQESKSNQQGERIVSRYFQHSEIERAAHN--EDEDDDVNVTDQ 180

Query: 246 PIKRSRVGQYRKRRRKDVASSSDNSKAYQRSIRKSSRFVKESGTDKRVRFVSRYFQNSEK 305
           P KRSRVGQYRKRRRKDVASSSDNSKAYQRSIRKSSR +K+SGTDKRVR VSRYFQNSEK
Sbjct: 181 PFKRSRVGQYRKRRRKDVASSSDNSKAYQRSIRKSSRSIKKSGTDKRVRIVSRYFQNSEK 240

Query: 306 NPEVEIEVSPPLQNSKTKQQGERIVSRFFQKSEEQEVVNNQQEVIQLPSQCAKSVKRIRK 365
           NPEVEIEVSP LQNSKT QQ ER+VSRFFQKSEE EVVNNQQEVIQLPSQCAKSVKRIRK
Sbjct: 241 NPEVEIEVSPSLQNSKTNQQEERVVSRFFQKSEEHEVVNNQQEVIQLPSQCAKSVKRIRK 300

Query: 366 PAKERKVRDKVSARPRTTLSADELFLEAYRRKSSDDTWKPPPSGIRLLQQDHAYDPWRVL 425
           PAKERKVRDKVSA+PRTTLSADELFLEAYRRKSSDDTWKPPPSGIRLLQQDHAYDPWRVL
Sbjct: 301 PAKERKVRDKVSAKPRTTLSADELFLEAYRRKSSDDTWKPPPSGIRLLQQDHAYDPWRVL 360

Query: 426 VICMLLNRTTGQQFCHSTALPQ 448
           VICMLLNRTTGQQFCHST LP+
Sbjct: 361 VICMLLNRTTGQQFCHSTTLPR 380

[Close]

BLAST of CmoCh11G012620 vs. ExPASy TrEMBL
Match: A0A6J1HWM5 (methyl-CpG-binding domain protein 4-like protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468538 PE=4 SV=1)

HSP 1 Score: 659.1 bits (1699), Expect = 1.4e-185
Identity = 348/373 (93.30%), Postives = 357/373 (95.71%), Query Frame = 0


Query: 66  MAQNSPISTLEVLQTSESNHQKTAAGQEIPILCIEDLQDNPKRGSSTLTVEDVQEVSPKT 125
           MA NSPISTLEVLQTSE+NHQKTAAG EIPILCIE LQD+PKR  STLTVEDVQEVSPKT
Sbjct: 1   MALNSPISTLEVLQTSEANHQKTAAGHEIPILCIEYLQDDPKREISTLTVEDVQEVSPKT 60

Query: 126 PTSERERVLVHEPPILTLEDIQNAKSDHQPAIEPPLARRVLRFYRQFGFDEQIVQKTPPS 185
           PTSERERVL HEPPILTLED+QNAKSDHQPAI+PPLARRVLRF RQFGFDEQIVQKTPPS
Sbjct: 61  PTSERERVLAHEPPILTLEDLQNAKSDHQPAIKPPLARRVLRFCRQFGFDEQIVQKTPPS 120

Query: 186 VRNSMPVQRDERVVSRHFQESKSNQQGERIVSRYFQHSEIERAAHNEDEDEDEDVNVTDQ 245
           VRNSMPVQRDERVVSRHFQESKSNQQGERIVSRYFQHSEIERAAHN  EDED+DVNVTDQ
Sbjct: 121 VRNSMPVQRDERVVSRHFQESKSNQQGERIVSRYFQHSEIERAAHN--EDEDDDVNVTDQ 180

Query: 246 PIKRSRVGQYRKRRRKDVASSSDNSKAYQRSIRKSSRFVKESGTDKRVRFVSRYFQNSEK 305
           P KRSRVGQYRKRRRKDVASSSDNSKAYQRSIRKSSR +K+SGTDKRVR VSRYFQNSEK
Sbjct: 181 PFKRSRVGQYRKRRRKDVASSSDNSKAYQRSIRKSSRSIKKSGTDKRVRIVSRYFQNSEK 240

Query: 306 NPEVEIEVSPPLQNSKTKQQGERIVSRFFQKSEEQEVVNNQQEVIQLPSQCAKSVKRIRK 365
           NPEVEIEVSP LQNSKT QQ ER+VSRFFQKSEE EVVNNQQEVIQLPSQCAKSVKRIRK
Sbjct: 241 NPEVEIEVSPSLQNSKTNQQEERVVSRFFQKSEEHEVVNNQQEVIQLPSQCAKSVKRIRK 300

Query: 366 PAKERKVRDKVSARPRTTLSADELFLEAYRRKSSDDTWKPPPSGIRLLQQDHAYDPWRVL 425
           PAKERKVRDKVSA+PRTTLSADELFLEAYRRKSSDDTWKPPPSGIRLLQQDHAYDPWRVL
Sbjct: 301 PAKERKVRDKVSAKPRTTLSADELFLEAYRRKSSDDTWKPPPSGIRLLQQDHAYDPWRVL 360

Query: 426 VICMLLNRTTGQQ 439
           VICMLLNRTTGQQ
Sbjct: 361 VICMLLNRTTGQQ 371

[Close]

BLAST of CmoCh11G012620 vs. ExPASy TrEMBL
Match: A0A5D3CU57 (Methyl-CpG-binding domain protein 4-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00130 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 1.4e-108
Identity = 253/442 (57.24%), Postives = 301/442 (68.10%), Query Frame = 0


Query: 1   MTATTIMNPNLSPPSSSSFPDFLFSQFAFQGCSSSRFRFPPSKCPSESNRQNPTP-EDFT 60
           M ATT +NPNL+PPSSSS+P  LFS+F F+G S SRFRFPPSK    S  QNP P +D T
Sbjct: 1   MAATTSINPNLTPPSSSSYPHDLFSEFVFRGTSRSRFRFPPSK----SAHQNPNPYQDST 60

Query: 61  QKRTTLMAQNSPISTLEVLQTSESN--HQKTAAGQEIPILCIEDLQDNPKRGSSTLTVED 120
                   Q+SPISTL  LQTSE N  H K+ A                           
Sbjct: 61  --------QHSPISTLYDLQTSEPNNHHNKSLA--------------------------- 120

Query: 121 VQEVSPKTPTSERERVLVHEPPILTLEDIQNAKSDHQPAIEPPLARRVLRFYRQFGFDEQ 180
                  +P+SE +     EPPILTLED+QN K   Q   +P LARRVL FYR+FGFD++
Sbjct: 121 -------SPSSEAD-----EPPILTLEDLQNGKLPLQSPKKPSLARRVLSFYREFGFDKK 180

Query: 181 IVQKTPPSVRNSMPVQRDERVVSRHFQESKSNQQGERIVSRYFQHSEIERAAHNEDEDED 240
           ++Q T  SV NS PVQ   RVVSR+FQ S+S QQ ERIVSRYF+ S  ERAAH EDE++D
Sbjct: 181 LLQATSHSVLNSEPVQEGTRVVSRYFQNSRSTQQRERIVSRYFKKSVKERAAHYEDENDD 240

Query: 241 EDVNVTDQPIKRSRVGQYRKRRRKDVASSSDNSKAYQRSIRKSSRFVKESGTDKRVRFVS 300
              N+T+QP KRS      KRRRKDV  SS NSK    S+ K+SR V++S TD R R VS
Sbjct: 241 G--NLTEQPSKRS-----SKRRRKDVDPSSVNSKTNHHSMGKTSRSVQKSRTDTRARIVS 300

Query: 301 RYFQNSEKNPEVEIEVSPPLQNSKTKQQGERIVSRFFQKSEEQEVVNNQQEVIQLPSQCA 360
            YFQ SEK+ E++ EVSP LQNSK+ QQ E++VSRFF KS +Q+ VNNQ+E  +  +QCA
Sbjct: 301 GYFQYSEKSLEMDREVSPSLQNSKSNQQEEKMVSRFFLKSGKQQAVNNQEEATEQLNQCA 360

Query: 361 KSVKRIRKPAKERKVRDKVSA-RPRTTLSADELFLEAYRRKSSDDTWKPPPSGIRLLQQD 420
           KSVKR+RKP  ERK ++K S+ +PRTTL+A ELFLEAYRRKS DDTWKPPPSG RLLQ D
Sbjct: 361 KSVKRVRKPVNERKQKNKTSSTKPRTTLTAAELFLEAYRRKSPDDTWKPPPSGTRLLQHD 384

Query: 421 HAYDPWRVLVICMLLNRTTGQQ 439
           HAYDPWRVLVICMLLNRT+G+Q
Sbjct: 421 HAYDPWRVLVICMLLNRTSGRQ 384

[Close]

BLAST of CmoCh11G012620 vs. ExPASy TrEMBL
Match: A0A1S3CCU6 (methyl-CpG-binding domain protein 4-like protein OS=Cucumis melo OX=3656 GN=LOC103499353 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 1.4e-108
Identity = 253/442 (57.24%), Postives = 301/442 (68.10%), Query Frame = 0


Query: 1   MTATTIMNPNLSPPSSSSFPDFLFSQFAFQGCSSSRFRFPPSKCPSESNRQNPTP-EDFT 60
           M ATT +NPNL+PPSSSS+P  LFS+F F+G S SRFRFPPSK    S  QNP P +D T
Sbjct: 1   MAATTSINPNLTPPSSSSYPHDLFSEFVFRGTSRSRFRFPPSK----SAHQNPNPYQDST 60

Query: 61  QKRTTLMAQNSPISTLEVLQTSESN--HQKTAAGQEIPILCIEDLQDNPKRGSSTLTVED 120
                   Q+SPISTL  LQTSE N  H K+ A                           
Sbjct: 61  --------QHSPISTLYDLQTSEPNNHHNKSLA--------------------------- 120

Query: 121 VQEVSPKTPTSERERVLVHEPPILTLEDIQNAKSDHQPAIEPPLARRVLRFYRQFGFDEQ 180
                  +P+SE +     EPPILTLED+QN K   Q   +P LARRVL FYR+FGFD++
Sbjct: 121 -------SPSSEAD-----EPPILTLEDLQNGKLPLQSPKKPSLARRVLSFYREFGFDKK 180

Query: 181 IVQKTPPSVRNSMPVQRDERVVSRHFQESKSNQQGERIVSRYFQHSEIERAAHNEDEDED 240
           ++Q T  SV NS PVQ   RVVSR+FQ S+S QQ ERIVSRYF+ S  ERAAH EDE++D
Sbjct: 181 LLQATSHSVLNSEPVQEGTRVVSRYFQNSRSTQQRERIVSRYFKKSVKERAAHYEDENDD 240

Query: 241 EDVNVTDQPIKRSRVGQYRKRRRKDVASSSDNSKAYQRSIRKSSRFVKESGTDKRVRFVS 300
              N+T+QP KRS      KRRRKDV  SS NSK    S+ K+SR V++S TD R R VS
Sbjct: 241 G--NLTEQPSKRS-----SKRRRKDVDPSSVNSKTNHHSMGKTSRSVQKSRTDTRARIVS 300

Query: 301 RYFQNSEKNPEVEIEVSPPLQNSKTKQQGERIVSRFFQKSEEQEVVNNQQEVIQLPSQCA 360
            YFQ SEK+ E++ EVSP LQNSK+ QQ E++VSRFF KS +Q+ VNNQ+E  +  +QCA
Sbjct: 301 GYFQYSEKSLEMDREVSPSLQNSKSNQQEEKMVSRFFLKSGKQQAVNNQEEATEQLNQCA 360

Query: 361 KSVKRIRKPAKERKVRDKVSA-RPRTTLSADELFLEAYRRKSSDDTWKPPPSGIRLLQQD 420
           KSVKR+RKP  ERK ++K S+ +PRTTL+A ELFLEAYRRKS DDTWKPPPSG RLLQ D
Sbjct: 361 KSVKRVRKPVNERKQKNKTSSTKPRTTLTAAELFLEAYRRKSPDDTWKPPPSGTRLLQHD 384

Query: 421 HAYDPWRVLVICMLLNRTTGQQ 439
           HAYDPWRVLVICMLLNRT+G+Q
Sbjct: 421 HAYDPWRVLVICMLLNRTSGRQ 384

[Close]

BLAST of CmoCh11G012620 vs. TAIR 10
Match: AT3G07930.3 (DNA glycosylase superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 6.9e-12
Identity = 67/221 (30.32%), Postives = 106/221 (47.96%), Query Frame = 0


Query: 236 EDEDVNVTDQPIKRSRVGQY--RKRRRKDVASSSDNSKAYQRSIRKSSRFVKE--SGTDK 295
           +D+D +V+D  I+R    ++    RR       S  S+  +      S   KE  S    
Sbjct: 123 DDDDDSVSDSHIERQECSEFHVEVRRVSPYFQGSTVSQQSKEGCDSDSVCSKEGCSKVQA 182

Query: 296 RVRFVSRYFQNSEKNPEVEIEVSPPLQNSKTKQQGE-------RIVSRFFQKSEEQEVVN 355
           +V  VS YFQ S  + + + ++    Q+ +  ++G        R VS +FQ+S   E  N
Sbjct: 183 KVPRVSPYFQASTIS-QCDSDIVSSSQSGRNYRKGSSKRQVKVRRVSPYFQESTVSEQPN 242

Query: 356 -------NQQEVIQLPSQCAKSVKRIRKPAKERKVRDKVSARPRTTLSADELFLEAYRRK 415
                  N  +V+++         ++ +  KE+    + +      LS  +   + Y RK
Sbjct: 243 QAPKGLRNYFKVVKVSRYFHADGIQVNESQKEKSRNVRKTPIVSPVLSLSQKTDDVYLRK 302

Query: 416 SSDDTWKPPPSGIRLLQQDHAYDPWRVLVICMLLNRTTGQQ 439
           + D+TW PP S   LLQ+DH +DPWRVLVICMLLN+T+G Q
Sbjct: 303 TPDNTWVPPRSPCNLLQEDHWHDPWRVLVICMLLNKTSGAQ 342

[Close]

BLAST of CmoCh11G012620 vs. TAIR 10
Match: AT3G07930.2 (DNA glycosylase superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 6.9e-12
Identity = 67/221 (30.32%), Postives = 106/221 (47.96%), Query Frame = 0


Query: 236 EDEDVNVTDQPIKRSRVGQY--RKRRRKDVASSSDNSKAYQRSIRKSSRFVKE--SGTDK 295
           +D+D +V+D  I+R    ++    RR       S  S+  +      S   KE  S    
Sbjct: 123 DDDDDSVSDSHIERQECSEFHVEVRRVSPYFQGSTVSQQSKEGCDSDSVCSKEGCSKVQA 182

Query: 296 RVRFVSRYFQNSEKNPEVEIEVSPPLQNSKTKQQGE-------RIVSRFFQKSEEQEVVN 355
           +V  VS YFQ S  + + + ++    Q+ +  ++G        R VS +FQ+S   E  N
Sbjct: 183 KVPRVSPYFQASTIS-QCDSDIVSSSQSGRNYRKGSSKRQVKVRRVSPYFQESTVSEQPN 242

Query: 356 -------NQQEVIQLPSQCAKSVKRIRKPAKERKVRDKVSARPRTTLSADELFLEAYRRK 415
                  N  +V+++         ++ +  KE+    + +      LS  +   + Y RK
Sbjct: 243 QAPKGLRNYFKVVKVSRYFHADGIQVNESQKEKSRNVRKTPIVSPVLSLSQKTDDVYLRK 302

Query: 416 SSDDTWKPPPSGIRLLQQDHAYDPWRVLVICMLLNRTTGQQ 439
           + D+TW PP S   LLQ+DH +DPWRVLVICMLLN+T+G Q
Sbjct: 303 TPDNTWVPPRSPCNLLQEDHWHDPWRVLVICMLLNKTSGAQ 342

[Close]

BLAST of CmoCh11G012620 vs. TAIR 10
Match: AT3G07930.1 (DNA glycosylase superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 1.3e-10
Identity = 65/218 (29.82%), Postives = 104/218 (47.71%), Query Frame = 0


Query: 236 EDEDVNVTDQPIKRSRVGQY--RKRRRKDVASSSDNSKAYQRSIRKSSRFVKE--SGTDK 295
           +D+D +V+D  I+R    ++    RR       S  S+  +      S   KE  S    
Sbjct: 123 DDDDDSVSDSHIERQECSEFHVEVRRVSPYFQGSTVSQQSKEGCDSDSVCSKEGCSKVQA 182

Query: 296 RVRFVSRYFQNSEKNPEVEIEVSPPLQNSKTKQQGE-------RIVSRFFQKSEEQEVVN 355
           +V  VS YFQ S  + + + ++    Q+ +  ++G        R VS +FQ+S   E  N
Sbjct: 183 KVPRVSPYFQASTIS-QCDSDIVSSSQSGRNYRKGSSKRQVKVRRVSPYFQESTVSEQPN 242

Query: 356 -------NQQEVIQLPSQCAKSVKRIRKPAKERKVRDKVSARPRTTLSADELFLEAYRRK 415
                  N  +V+++         ++ +  KE+    + +      LS  +   + Y RK
Sbjct: 243 QAPKGLRNYFKVVKVSRYFHADGIQVNESQKEKSRNVRKTPIVSPVLSLSQKTDDVYLRK 302

Query: 416 SSDDTWKPPPSGIRLLQQDHAYDPWRVLVICMLLNRTT 436
           + D+TW PP S   LLQ+DH +DPWRVLVICMLLN+T+
Sbjct: 303 TPDNTWVPPRSPCNLLQEDHWHDPWRVLVICMLLNKTS 339

The following BLAST results are available for this feature:

BLAST of CmoCh11G012620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0IGK1	9.7e-11	30.32	Methyl-CpG-binding domain protein 4-like protein OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of CmoCh11G012620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EZJ4	4.4e-240	100.00	methyl-CpG-binding domain protein 4-like protein OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1HY54	8.4e-191	92.93	methyl-CpG-binding domain protein 4-like protein isoform X2 OS=Cucurbita maxima ...	[more]
A0A6J1HWM5	1.4e-185	93.30	methyl-CpG-binding domain protein 4-like protein isoform X1 OS=Cucurbita maxima ...	[more]
A0A5D3CU57	1.4e-108	57.24	Methyl-CpG-binding domain protein 4-like protein OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3CCU6	1.4e-108	57.24	methyl-CpG-binding domain protein 4-like protein OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of CmoCh11G012620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07930.3	6.9e-12	30.32	DNA glycosylase superfamily protein	[more]
AT3G07930.2	6.9e-12	30.32	DNA glycosylase superfamily protein	[more]
AT3G07930.1	1.3e-10	29.82	DNA glycosylase superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.340.30	Hypothetical protein; domain 2	coord: 392..445 e-value: 2.6E-8 score: 35.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 228..285
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..214
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..122
None	No IPR available	PANTHER	PTHR15074:SF0	METHYL-CPG-BINDING DOMAIN PROTEIN 4-RELATED	coord: 173..444
IPR045138	Methyl-CpG binding protein MeCP2/MBD4	PANTHER	PTHR15074	METHYL-CPG-BINDING PROTEIN	coord: 173..444

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G012620.1	CmoCh11G012620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006284	base-excision repair
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003677	DNA binding