CmoCh11G012570 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G012570
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Flap endonuclease 1
Location	Cmo_Chr11: 8014552 .. 8020104 (+)
RNA-Seq Expression	CmoCh11G012570
Synteny	CmoCh11G012570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGCTTTTTTTGTGGTAGGATCTATGAATTTAGGTGGATTTGATTTTGTAAGTTTTGCACACTAAATGAGTGTGTACCTGGATTTTTTTCCTTTTTTACCTGGGTCCTTCGGTGCTTTAATTCTTACATTCATTTTTAATTAATAAGAGGGGCTTGTTCTCAAAGTTTGTATATATTTCAGGTTTATGCTGTGGCATCAGAAGACATGGATTCACTAACATTTGGATCTCCTAGATTTCTTCGTCATTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTTGCAAAGGTGATTTGTCTCCATCTTAATTTGGCTATTTACTTATCTATAGGAAATCAAGTTATAAATTATAGCTCGTATATATTTATAGCTGTATTTTCTCTTTTCCTTATCGGTTTAGATTGATTGCATTTTTTTTGCTCATCTAATTGGGCGTCTCTTTGTATGAATCTGATTCTTCTCTACTCTATGAAATATAAAAAATATTATTGTTCATAGATAGCTTCATGGTATTAGAGTTATGAAACTATTCAATTTGGAAAGGACATCACCCTAAAAAGGTGAAGTTCTTCCTTTGGAAAATAGCGGTTTAGCACAAGTGAAAATCTTCAAAATAGAAAGCCCTACATGACCCTATTTCCAAATTGGTGTCCATTATGCAAGAAAGGAAACGAGTCACAAAGCCACTTATTTATGCAATGCACATATGCTCAGAATTTGTAGACAACGATTCTCAATATAATCAGAAGGTATCTCAGATTTCCTAGGGAGAGAAATAATCTATTGGACATGACCTTAACGTACCACCCCTTCAAGAATCCAAAAGCCCTACTATGGAAAACTTAATCATGACTTTTTTTTGGAACCTGTGGAAAAAATTAAATAAAAGAATATTTGTGGAAAAGACATAGACTTATACAAAACTCTTCGTCAATGTTGTTTACCAAGCTATATCTTGGTGTAAATGGTCTAATATTTTTATTTCCTATACTTATACCTCCCTCATAAGAGAATTACATGAATTACATGTCACTTTTATAAGAGAGAGACTAACTAAATCTAAATTAATAGATAATCTAAATAAGTCTCTAGATACTAGGTAATCTAAATTTTAATAAATTCAACCCGATAAATTAGGGAGGTCAAGTACTTGGTTCTCCTATTGACCGTAAGTCGAGATCAGAGATTGTTCCAGTCACTTGGCATAGTAAGGAACAATTAGTTGTAGCTTGAAGTACTACTGAAGTTGAGTTTCGATCACTAGTTCATGGGATTTGTGAAGGAATTTAGTTAAAAGGCCTTCTCATTGAACTAAAGGTCAAGATAGAAGACATCACAGAATTACCGTGTGATAACCAATCAATCATAGTTATTGCAATGAATACAATACACCATGACGGAATAAAGAAGGTCGAGATAGATTGACACTTCGTCAGTGAGAAATTGAGACAAACACTATTACACTGAGATATGTACCTTCCCAACAAGTTGCAGATTTATTAACTAACGCTTTACAACGAATTCATCTTGATGGTTTAATTTCCAAGCTTGGCGTGACAAGCATGTACTATCCAACTTGAGGGGAGTGTAGAAAATCAAGCTGTGAGTCAGGGCTTTATGTTTGGGATTGTTTCCGTGTATATGTTTATAGTTGTATTTTTCTTTTCCTTATAGGTTTAGATTAGTAGTTTGCTTATTTGATTCTCTTTGTATAAATCTGGTTTTTCTCCACTCAATCAAGTACAGCTTCAGTGATCATTTACCAATAATTTGTTTCATTTCAGATTTTGGAGGAGCTGAACCTTACCATGGATCAATTTGTCGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAGTATTCGAGGTATTTGGATTCTATATAGTATATATGTTTTATTGCCTCCTACTGATGTTGATGCTCAAGTTTTATTGTGCTGTTCCAATTTTAGCCCTTACTTATGCATTTACTCCACAGGTATAGGGGGACAGACTGCTTTAAAGCTTATCCGTCAACATGGGTCTATAGAAAATATACTAGAGAACATCAATAAAGAAAGGTGACCTTTTTCTAGGATTGAAATATATATCATAAAGTGCAATTTTATCTTGAATATGCTCAAACTTGTTCACATGATTTGATGAATGCATGGGTATACTTAATTTGTTGGATATGGTCTGGTTATTATGAATCTTGAGATGATGTCCTAGCCAATTTGAATCTTGTTGAATGAGAAGCCTTCTATGTATCTGTATTGCATTGAATCCTATTAGTAGCCAGTGACTGTTTTAGATAATCTTATAGTGTAGAATTCTTCAATCTTGTCAGATATCGTTAAGCATATGTAGTGCAATCATTTGGAGAATTTATTACCTTTCATGATTCTGTTTTCTAAATTATTCTATTCCTGTTTAAGGCATTGTTATCTTGTAAAGTAAGTAGATAGTCTTATCTTTCTCTTATATTTATCTCAGTTAAAGTATCTTTCAAATAGCTTTGATAAGAGCGTAGTGACCGGAAAGCTGTAAACTTGAGTTGTGCAACTTCAAAATATTTCTTATTAAACAAAGTCTATCTAGATGAGAAGGAAAGAATAACGGTACAACCCATGGCAGATCCAAAGCTTTAAGTCGGCAGCTATATAGAAATAAAGTTAATTACAAGTTTTGTCCTTAGATTTTGAGTGGTGTCTGTTTGGTTTTTGAACTTTCAGAAGTGTTTAATAGATCCTTGAACTTTCAAGTTTGTTTTTAATAGATTCTGGACAAATCTGACTATTATTTTTTTAATTAATTAATCTATTAACTATAAGTTTGAATTATAGTTTAGTAGAACCTTATATAAGTTCAATTTTATGTCTAATAAATCTATAAATTTTAAAAATTTTAAAAATTCAAGGATTAAATTGATAATTTATTGTAGAAATAATTCTGACCACATTGATATACTGATATATTGCTATCAGTTGGTAGATTTTGATAATAAATTGACTAAATTGTAAAATTTGTCCTAAACTTTCATGATTGTGATTAAAAGTCCCTAGCTTTAAAAGTTTATAACAAGTCACTAAACTTCCAACTTTCAATTGACAGGTTGCTAAATTTTCAAATTTGTATATAATGTGTCAAATTACAGAAGAGCAACAAAATACCGAATGCTTCTTGTTTCCCATATTATTATTATTATTATTATGTTGTAAACAGGTACCAAATTCCAGAGGGTTGGCCATTTCAAGAGGCCCGACAGCTTTTTAAAGAACCACTAGTGTGTACTGACGAAGAGCAACTTGACATTAAGTGGACTACTCCAGATGAAGAAGTAATTTAAATTTTCTGGTTTAAAAGTCATCTCCTGACTGTTTTCTTTCTTCATTTTATATATGTACGCGCACACACACGAACATATTTTGATACTAAAGTTTTAGTTCTCCCGCATGCACATGCTTGTTATGATATTAAAATTGTATTCTCATATCTATTACAGGGCTTAATCTCATTTTTGGTGAATGAGAATGGGTTCAATAGCGATAGAGTAACAAAGGTTTATCATCCTGATAATCTCAAGTTTTATATCATACAGTTTTATTTATTTATTTATTTTTTTAATGAAAGTCATTTAAATTAAATCTTCAAGAAAGTTTACGTCTCATACATCATTTTTTGTTCTTTCTCCAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGTAAGTGTTAGCTATATACTTTCATTTATTTCTTAAAAATAAAAGTTCTTCATCTCTTTGGTCGATCATGCTGTTTATTCCTCCTTTTCAGGATGGAGTCATTTTTCAAGCCCGTAACGAATCCTTCAGTATCCACTAAAAGAAAGGTATATTGTTAGCTATCTACTGATATCTGATATTAGGATTGATGCATTTTAACTTCCATTCTATAATTCTAATAAACCTATTAAATTTCGAATTTTAAGACCAACAGTATTTTAATGGCATTATGACTGTTACATCTAACTCCCCTGCAAATTTTCCTTCATTTTGAATTTGTTGATTTACCATTTTTTTTTAAACTGAGATTCAATTATGTTGATCTTCAACATCAACATTGATTTAAGCTTCACAGTTCATTGGTATTGACTATATTTTTTGTCCGACCGTCCATGATCTGTCCAAAAGTACTTCTCTGCCTCTTTCTGTCTAATTTACTTCAGACTCTCCATTTCTCTCTATTATCTCAAATTACCTACAAAATCCATTAAACGAGAAGCATTAAAAATAATTCGAGTTCTTAAAGAACTGGTGGGATATAGAGACCTAATTGTCTCTACCTTTCTATACCGAATGACAGGTAACCAAATGTGTACTTAAGTCTCCTAAACCAGGAATCCAGCATAAATACTCTCCACAAGCTTTTTATCCGTCAAGGACAAAGGTCATTGGCAGCCTAGGGACGCCAATATTAGACCATTCTTCCAAGTACTCAGGGTCAAGGCCATTAGTCATGGCTGCTTGCTTCGGCACATGAAGCTGAAAACGCTGGTGAAACTGGTTGCTTTGGTTTTTAGTGATGTACTTGAAATCCTCATCATCAATTTCCTTGAACCTTATTGTTCATCTTCAAATATATACATATGGAAACTATAATTATGGAGCTCAAGGTGCTGGATTTGACAGTCCTGATTAATTAAAACCCACCCTGTAGCTCTATTACATTAAAAAAGTTGGTGCGTTGTGTAGAAGCAGTTTATGACGCATGATTCTGGAGTTTTTTGGGGGAAAAAAAGCGATTGCTAGAAATAAGACATTACACATCATAGGCAACACACTGATCAATCATTTTGCCGACTTTGATTTTTAGTTTTAGTTGTGGTGGAGTATTTATGATTAATGGTCGTTGCTTTTATTAATGTACATTTGCTCTTTACATTTTCATTTGCATTGTGGCACCACATTTTTCTGCAACTATGACCCATTAATTAAAGTTGGGATTCTTGACTTCAGCAATCTATACCTTTTATTTTATTTTATTTTATGTTATCATTTTTATTTTTACGATCAATATTATCTCTGTTTCACTTTGTATTTGTAATCCAACAGGAGACATCAGAAAAGCCCACCAAACAAGCAATAACTAAGAAATCGAAGTCCAGTGGTGGTAAAATAAAGTAGGAAGAGTTGGTTCCATCGCCACTGTCGAATTTGTGCAACGAACTTGCTGATTTTAAGTAATTTATAAGCTTTAGGTGGCTGCAAATTTAGGAGATAGTTGCGACATTAATGTTCTTGAATGATTGGTCTTGGTGCAATTTTAGGAGGTATATCTTTGAGTACTTGCGGACATGCCTTGTGTGACTGCAATCTATTAGTTTTAAGTTGCAGGCCCTCTCAAGAATGATAATTTTGTTTCTGCTCTGCAACCTGTATATTTCTTAACTAAATGAATAGTGAAGTAAGATCTTATAGGTTTGCTTTTCCAATTCTTAGAACTCCTGGATTGATTGGAGAGGATAGTTGAGTTGCCAAATTTGAAAATTGAATTCA

mRNA sequence

ATGCATGCTTTTTTTGTGGTAGGATCTATGAATTTAGGTGGATTTGATTTTGTTTATGCTGTGGCATCAGAAGACATGGATTCACTAACATTTGGATCTCCTAGATTTCTTCGTCATTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTTGCAAAGTTAAAGTATCTTTCAAATAGCTTTGATAAGAGCGTAGTGACCGGAAAGCTGTACCAAATTCCAGAGGGTTGGCCATTTCAAGAGGCCCGACAGCTTTTTAAAGAACCACTAGTGTGTACTGACGAAGAGCAACTTGACATTAAGTGGACTACTCCAGATGAAGAAGGCTTAATCTCATTTTTGGTGAATGAGAATGGGTTCAATAGCGATAGAGTAACAAAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGATGGAGTCATTTTTCAAGCCCGTAACGAATCCTTCAGTATCCACTAAAAGAAAGGTAACCAAATGTGTACTTAAGTCTCCTAAACCAGGAATCCAGCATAAATACTCTCCACAAGCTTTTTATCCGTCAAGGACAAAGGTCATTGGCAGCCTAGGGACGCCAATATTAGACCATTCTTCCAAGTACTCAGGGTCAAGGCCATTAGTCATGGCTGCTTGCTTCGGCACATGAAGCTGAAAACGCTGGTGAAACTGGTTGCTTTGGTTTTTAGTGATGTACTTGAAATCCTCATCATCAATTTCCTTGAACCTTATTGTTCATCTTCAAATATATACATATGGAAACTATAATTATGGAGCTCAAGGTGCTGGATTTGACAGTCCTGATTAATTAAAACCCACCCTGTAGCTCTATTACATTAAAAAAGTTGGTGCGTTGTGTAGAAGCAGTTTATGACGCATGATTCTGGAGTTTTTTGGGGGAAAAAAAGCGATTGCTAGAAATAAGACATTACACATCATAGGCAACACACTGATCAATCATTTTGCCGACTTTGATTTTTAGTTTTAGTTGTGGTGGAGTATTTATGATTAATGGTCGTTGCTTTTATTAATGTACATTTGCTCTTTACATTTTCATTTGCATTGTGGCACCACATTTTTCTGCAACTATGACCCATTAATTAAAGTTGGGATTCTTGACTTCAGCAATCTATACCTTTTATTTTATTTTATTTTATGTTATCATTTTTATTTTTACGATCAATATTATCTCTGTTTCACTTTGTATTTGTAATCCAACAGGAGACATCAGAAAAGCCCACCAAACAAGCAATAACTAAGAAATCGAAGTCCAGTGGTGGTAAAATAAAGTAGGAAGAGTTGGTTCCATCGCCACTGTCGAATTTGTGCAACGAACTTGCTGATTTTAAGTAATTTATAAGCTTTAGGTGGCTGCAAATTTAGGAGATAGTTGCGACATTAATGTTCTTGAATGATTGGTCTTGGTGCAATTTTAGGAGGTATATCTTTGAGTACTTGCGGACATGCCTTGTGTGACTGCAATCTATTAGTTTTAAGTTGCAGGCCCTCTCAAGAATGATAATTTTGTTTCTGCTCTGCAACCTGTATATTTCTTAACTAAATGAATAGTGAAGTAAGATCTTATAGGTTTGCTTTTCCAATTCTTAGAACTCCTGGATTGATTGGAGAGGATAGTTGAGTTGCCAAATTTGAAAATTGAATTCA

Coding sequence (CDS)

ATGCATGCTTTTTTTGTGGTAGGATCTATGAATTTAGGTGGATTTGATTTTGTTTATGCTGTGGCATCAGAAGACATGGATTCACTAACATTTGGATCTCCTAGATTTCTTCGTCATTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTTGCAAAGTTAAAGTATCTTTCAAATAGCTTTGATAAGAGCGTAGTGACCGGAAAGCTGTACCAAATTCCAGAGGGTTGGCCATTTCAAGAGGCCCGACAGCTTTTTAAAGAACCACTAGTGTGTACTGACGAAGAGCAACTTGACATTAAGTGGACTACTCCAGATGAAGAAGGCTTAATCTCATTTTTGGTGAATGAGAATGGGTTCAATAGCGATAGAGTAACAAAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGATGGAGTCATTTTTCAAGCCCGTAACGAATCCTTCAGTATCCACTAAAAGAAAGGTAACCAAATGTGTACTTAAGTCTCCTAAACCAGGAATCCAGCATAAATACTCTCCACAAGCTTTTTATCCGTCAAGGACAAAGGTCATTGGCAGCCTAGGGACGCCAATATTAGACCATTCTTCCAAGTACTCAGGGTCAAGGCCATTAGTCATGGCTGCTTGCTTCGGCACATGA

Protein sequence

MHAFFVVGSMNLGGFDFVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKLKYLSNSFDKSVVTGKLYQIPEGWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKVTKCVLKSPKPGIQHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMAACFGT

Homology

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BLAST of CmoCh11G012570 vs. ExPASy Swiss-Prot
Match: C6TEX6 (Flap endonuclease 1 OS=Glycine max OX=3847 GN=FEN1 PE=2 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 4.5e-54
Identity = 112/189 (59.26%), Postives = 132/189 (69.84%), Query Frame = 0


Query: 18  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV------- 77
           VY V SEDMDSLTFG+P+FLRHLMDPSS+KIPVMEFEVAK L+ L+ + D+ +       
Sbjct: 173 VYGVVSEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFEVAKILEELNMTMDQFIDLCILSG 232

Query: 78  -------------------------------VTGKLYQIPEGWPFQEARQLFKEPLVCTD 137
                                          +  + YQIP+ WP+QEAR+LFKEPLV TD
Sbjct: 233 CDYCDSIRGIGGLTALKLIRQHGSIENIPENLNKERYQIPDNWPYQEARRLFKEPLVITD 292

Query: 138 EEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 168
           E++LDIKW++PDEEGLI+FLVNENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKP  NP
Sbjct: 293 EKELDIKWSSPDEEGLITFLVNENGFNRDRVTKAIEKIKVAKNKSSQGRLESFFKPTANP 352

[Close]

BLAST of CmoCh11G012570 vs. ExPASy Swiss-Prot
Match: O65251 (Flap endonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=FEN1 PE=3 SV=2)

HSP 1 Score: 209.9 bits (533), Expect = 2.9e-53
Identity = 113/187 (60.43%), Postives = 128/187 (68.45%), Query Frame = 0


Query: 18  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV------- 77
           VY VASEDMDSLTFG+P+FLRHLMDPSSRKIPVMEFEVAK L+ L  + D+ +       
Sbjct: 173 VYGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSG 232

Query: 78  -------------------------------VTGKLYQIPEGWPFQEARQLFKEPLVCTD 137
                                          +  + YQIPE WP+ EAR+LFKEP V TD
Sbjct: 233 CDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKLFKEPDVITD 292

Query: 138 EEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 166
           EEQLDIKWT+PDEEG++ FLVNENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKPV N 
Sbjct: 293 EEQLDIKWTSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFFKPVANS 352

[Close]

BLAST of CmoCh11G012570 vs. ExPASy Swiss-Prot
Match: B8AW67 (Flap endonuclease 1-A OS=Oryza sativa subsp. indica OX=39946 GN=FEN1a PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.8e-48
Identity = 109/191 (57.07%), Postives = 123/191 (64.40%), Query Frame = 0


Query: 16  DFVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV----- 75
           D VYAVASEDMDSLTFG+PRFLRHLMDPSS+KIPVMEFEVAK L+ L  + D+ +     
Sbjct: 171 DMVYAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCIL 230

Query: 76  ---------------------------------VTGKLYQIPEGWPFQEARQLFKEPLVC 135
                                            +    YQIPE WP+QEAR+LFKEP V 
Sbjct: 231 SGCDYCDSIKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRLFKEPNVT 290

Query: 136 TDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVT 168
            D  +L  KW  PDEEGL+ FLV ENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKPV 
Sbjct: 291 LDIPEL--KWNAPDEEGLVQFLVKENGFNQDRVTKAIEKIKFAKNKSSQGRLESFFKPVV 350

[Close]

BLAST of CmoCh11G012570 vs. ExPASy Swiss-Prot
Match: Q9SXQ6 (Flap endonuclease 1-A OS=Oryza sativa subsp. japonica OX=39947 GN=FEN1A PE=1 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.8e-48
Identity = 109/191 (57.07%), Postives = 123/191 (64.40%), Query Frame = 0


Query: 16  DFVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV----- 75
           D VYAVASEDMDSLTFG+PRFLRHLMDPSS+KIPVMEFEVAK L+ L  + D+ +     
Sbjct: 171 DMVYAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCIL 230

Query: 76  ---------------------------------VTGKLYQIPEGWPFQEARQLFKEPLVC 135
                                            +    YQIPE WP+QEAR+LFKEP V 
Sbjct: 231 SGCDYCDSIKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRLFKEPNVT 290

Query: 136 TDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVT 168
            D  +L  KW  PDEEGL+ FLV ENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKPV 
Sbjct: 291 LDIPEL--KWNAPDEEGLVEFLVKENGFNQDRVTKAIEKIKFAKNKSSQGRLESFFKPVV 350

[Close]

BLAST of CmoCh11G012570 vs. ExPASy Swiss-Prot
Match: C5YUK3 (Flap endonuclease 1-A OS=Sorghum bicolor OX=4558 GN=FEN1-A PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.4e-47
Identity = 108/191 (56.54%), Postives = 124/191 (64.92%), Query Frame = 0


Query: 16  DFVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV----- 75
           D V+AVASEDMDSLTFG+PRFLRHLMDPSS+KIPVMEF+VAK L+ L  + D+ +     
Sbjct: 171 DKVFAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFDVAKVLEELELTMDQFIDLCIL 230

Query: 76  ---------------------------------VTGKLYQIPEGWPFQEARQLFKEPLVC 135
                                            +    YQIPE WP+QEAR+LFKEP V 
Sbjct: 231 CGCDYCDSIKGIGGQTALKLIRQHGSIESILENLNKDRYQIPEDWPYQEARRLFKEPNVT 290

Query: 136 TDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVT 168
            D  +L  KWT PDEEGLISFLV +NGFN DRVTKA+EKIK+AKNKSSQGR+ESFFKPV 
Sbjct: 291 LDVPEL--KWTPPDEEGLISFLVKDNGFNEDRVTKAIEKIKSAKNKSSQGRLESFFKPVA 350

[Close]

BLAST of CmoCh11G012570 vs. ExPASy TrEMBL
Match: A0A6J1EV18 (Flap endonuclease 1 OS=Cucurbita moschata OX=3662 GN=LOC111437876 PE=3 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 3.1e-98
Identity = 193/245 (78.78%), Postives = 199/245 (81.22%), Query Frame = 0


Query: 18  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV------- 77
           VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK L+ L+ + D+ V       
Sbjct: 173 VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSG 232

Query: 78  -------------------------------VTGKLYQIPEGWPFQEARQLFKEPLVCTD 137
                                          +  + YQIPEGWPFQEARQLFKEPLVCTD
Sbjct: 233 CDYCDSIRGIGGQTALKLIRQHGSIENILENINKERYQIPEGWPFQEARQLFKEPLVCTD 292

Query: 138 EEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 197
           EEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNP
Sbjct: 293 EEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 352

Query: 198 SVSTKRKVTKCVLKSPKPGIQHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMA 224
           SVSTKRKVTKCVLKSPKPGIQHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMA
Sbjct: 353 SVSTKRKVTKCVLKSPKPGIQHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMA 412

[Close]

BLAST of CmoCh11G012570 vs. ExPASy TrEMBL
Match: A0A6J1I0P7 (Flap endonuclease 1 OS=Cucurbita maxima OX=3661 GN=LOC111468704 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.6e-94
Identity = 186/245 (75.92%), Postives = 195/245 (79.59%), Query Frame = 0


Query: 18  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV------- 77
           VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEV+K L+ L+ + D+ V       
Sbjct: 173 VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVSKILEELNLTMDQFVDLCILSG 232

Query: 78  -------------------------------VTGKLYQIPEGWPFQEARQLFKEPLVCTD 137
                                          +  + YQIPE WPFQEARQLFKEPLVCTD
Sbjct: 233 CDYCDSIRGIGGQTALKLIRQHGSIENILENINKERYQIPEDWPFQEARQLFKEPLVCTD 292

Query: 138 EEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 197
           EEQLDIKWTTPDEEGLIS LVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNP
Sbjct: 293 EEQLDIKWTTPDEEGLISLLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 352

Query: 198 SVSTKRKVTKCVLKSPKPGIQHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMA 224
           SVSTKRKVTKCVLKSPKPGIQHKYSPQAFYPSRTKVIGSLGTPI+DHS KYSGS+PLVMA
Sbjct: 353 SVSTKRKVTKCVLKSPKPGIQHKYSPQAFYPSRTKVIGSLGTPIVDHSFKYSGSKPLVMA 412

[Close]

BLAST of CmoCh11G012570 vs. ExPASy TrEMBL
Match: A0A6J1DZA7 (Flap endonuclease 1 OS=Momordica charantia OX=3673 GN=LOC111025974 PE=3 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 1.2e-86
Identity = 173/245 (70.61%), Postives = 188/245 (76.73%), Query Frame = 0


Query: 18  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV------- 77
           VYAVASEDMDSLTFGSP+FLRHLMDPSSRKIPVMEFEVAK L+ L+ S D+ V       
Sbjct: 173 VYAVASEDMDSLTFGSPKFLRHLMDPSSRKIPVMEFEVAKILEELNLSMDQFVDLCILSG 232

Query: 78  -------------------------------VTGKLYQIPEGWPFQEARQLFKEPLVCTD 137
                                          +  + YQIP  WP+QEARQLFKEPLVCTD
Sbjct: 233 CDYCDSIRGIGGQTALKLIRQHGSIETILENINKERYQIPNDWPYQEARQLFKEPLVCTD 292

Query: 138 EEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 197
           EEQLDIKWTTPDEEGL++FLVNENGFNSDRVTKAVEKIKAAKNKSSQGR+ESFFKPVTNP
Sbjct: 293 EEQLDIKWTTPDEEGLLTFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRLESFFKPVTNP 352

Query: 198 SVSTKRKVTKCVLKSPKPGIQHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMA 224
           SV  KRKVTKCV++SPKPG+Q KYSPQAFY SRTKVIGSLG  +L+ SSKYSGS PLVMA
Sbjct: 353 SVPIKRKVTKCVIRSPKPGVQRKYSPQAFYSSRTKVIGSLGMSMLNLSSKYSGSGPLVMA 412

[Close]

BLAST of CmoCh11G012570 vs. ExPASy TrEMBL
Match: A0A1S3BQ01 (Flap endonuclease 1 OS=Cucumis melo OX=3656 GN=LOC103492083 PE=3 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.3e-83
Identity = 170/245 (69.39%), Postives = 187/245 (76.33%), Query Frame = 0


Query: 18  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV------- 77
           VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK L+ L+ + D+ +       
Sbjct: 173 VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 232

Query: 78  -------------------------------VTGKLYQIPEGWPFQEARQLFKEPLVCTD 137
                                          +  + YQIP+ WP++EARQLFKEPLVCTD
Sbjct: 233 CDYCDNIRGIGGLTALKLIRQHGAIEGILENINKERYQIPDDWPYKEARQLFKEPLVCTD 292

Query: 138 EEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 197
           EEQLDIKWTTPDEEGL++FLVNENGFNS+RVTKAVEKIKAAKNKSSQGRMESFFKPVTNP
Sbjct: 293 EEQLDIKWTTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 352

Query: 198 SVSTKRKVTKCVLKSPKPGIQHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMA 224
           SVS KRKV K VL+ PKPG QHK+S QAF  SR+KVIGSLG  +LDHSSKYSGS PLVMA
Sbjct: 353 SVSIKRKVNKRVLRFPKPGAQHKFSLQAFSFSRSKVIGSLGMSMLDHSSKYSGSGPLVMA 412

[Close]

BLAST of CmoCh11G012570 vs. ExPASy TrEMBL
Match: A0A1S3BPA7 (Flap endonuclease 1 OS=Cucumis melo OX=3656 GN=LOC103492083 PE=3 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.3e-83
Identity = 170/245 (69.39%), Postives = 187/245 (76.33%), Query Frame = 0


Query: 18  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV------- 77
           VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK L+ L+ + D+ +       
Sbjct: 174 VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 233

Query: 78  -------------------------------VTGKLYQIPEGWPFQEARQLFKEPLVCTD 137
                                          +  + YQIP+ WP++EARQLFKEPLVCTD
Sbjct: 234 CDYCDNIRGIGGLTALKLIRQHGAIEGILENINKERYQIPDDWPYKEARQLFKEPLVCTD 293

Query: 138 EEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 197
           EEQLDIKWTTPDEEGL++FLVNENGFNS+RVTKAVEKIKAAKNKSSQGRMESFFKPVTNP
Sbjct: 294 EEQLDIKWTTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 353

Query: 198 SVSTKRKVTKCVLKSPKPGIQHKYSPQAFYPSRTKVIGSLGTPILDHSSKYSGSRPLVMA 224
           SVS KRKV K VL+ PKPG QHK+S QAF  SR+KVIGSLG  +LDHSSKYSGS PLVMA
Sbjct: 354 SVSIKRKVNKRVLRFPKPGAQHKFSLQAFSFSRSKVIGSLGMSMLDHSSKYSGSGPLVMA 413

[Close]

BLAST of CmoCh11G012570 vs. TAIR 10
Match: AT5G26680.1 (5'-3' exonuclease family protein )

HSP 1 Score: 209.9 bits (533), Expect = 2.1e-54
Identity = 113/187 (60.43%), Postives = 128/187 (68.45%), Query Frame = 0


Query: 18  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV------- 77
           VY VASEDMDSLTFG+P+FLRHLMDPSSRKIPVMEFEVAK L+ L  + D+ +       
Sbjct: 173 VYGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSG 232

Query: 78  -------------------------------VTGKLYQIPEGWPFQEARQLFKEPLVCTD 137
                                          +  + YQIPE WP+ EAR+LFKEP V TD
Sbjct: 233 CDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKLFKEPDVITD 292

Query: 138 EEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 166
           EEQLDIKWT+PDEEG++ FLVNENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKPV N 
Sbjct: 293 EEQLDIKWTSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFFKPVANS 352

[Close]

BLAST of CmoCh11G012570 vs. TAIR 10
Match: AT5G26680.2 (5'-3' exonuclease family protein )

HSP 1 Score: 209.9 bits (533), Expect = 2.1e-54
Identity = 113/187 (60.43%), Postives = 128/187 (68.45%), Query Frame = 0


Query: 18  VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAK-LKYLSNSFDKSV------- 77
           VY VASEDMDSLTFG+P+FLRHLMDPSSRKIPVMEFEVAK L+ L  + D+ +       
Sbjct: 173 VYGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSG 232

Query: 78  -------------------------------VTGKLYQIPEGWPFQEARQLFKEPLVCTD 137
                                          +  + YQIPE WP+ EAR+LFKEP V TD
Sbjct: 233 CDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKLFKEPDVITD 292

Query: 138 EEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 166
           EEQLDIKWT+PDEEG++ FLVNENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKPV N 
Sbjct: 293 EEQLDIKWTSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFFKPVANS 352

The following BLAST results are available for this feature:

BLAST of CmoCh11G012570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C6TEX6	4.5e-54	59.26	Flap endonuclease 1 OS=Glycine max OX=3847 GN=FEN1 PE=2 SV=1	[more]
O65251	2.9e-53	60.43	Flap endonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=FEN1 PE=3 SV=2	[more]
B8AW67	2.8e-48	57.07	Flap endonuclease 1-A OS=Oryza sativa subsp. indica OX=39946 GN=FEN1a PE=3 SV=1	[more]
Q9SXQ6	2.8e-48	57.07	Flap endonuclease 1-A OS=Oryza sativa subsp. japonica OX=39947 GN=FEN1A PE=1 SV=...	[more]
C5YUK3	1.4e-47	56.54	Flap endonuclease 1-A OS=Sorghum bicolor OX=4558 GN=FEN1-A PE=3 SV=1	[more]

BLAST of CmoCh11G012570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EV18	3.1e-98	78.78	Flap endonuclease 1 OS=Cucurbita moschata OX=3662 GN=LOC111437876 PE=3 SV=1	[more]
A0A6J1I0P7	1.6e-94	75.92	Flap endonuclease 1 OS=Cucurbita maxima OX=3661 GN=LOC111468704 PE=3 SV=1	[more]
A0A6J1DZA7	1.2e-86	70.61	Flap endonuclease 1 OS=Momordica charantia OX=3673 GN=LOC111025974 PE=3 SV=1	[more]
A0A1S3BQ01	1.3e-83	69.39	Flap endonuclease 1 OS=Cucumis melo OX=3656 GN=LOC103492083 PE=3 SV=1	[more]
A0A1S3BPA7	1.3e-83	69.39	Flap endonuclease 1 OS=Cucumis melo OX=3656 GN=LOC103492083 PE=3 SV=1	[more]

BLAST of CmoCh11G012570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26680.1	2.1e-54	60.43	5'-3' exonuclease family protein	[more]
AT5G26680.2	2.1e-54	60.43	5'-3' exonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.1010		coord: 12..67 e-value: 1.8E-7 score: 32.8
None	No IPR available	PANTHER	PTHR11081:SF9	FLAP ENDONUCLEASE 1	coord: 74..181 coord: 16..58
IPR006086	XPG-I domain	PFAM	PF00867	XPG_I	coord: 16..55 e-value: 1.6E-6 score: 28.4
IPR006084	XPG/Rad2 endonuclease	PANTHER	PTHR11081	FLAP ENDONUCLEASE FAMILY MEMBER	coord: 74..181
IPR006084	XPG/Rad2 endonuclease	PANTHER	PTHR11081	FLAP ENDONUCLEASE FAMILY MEMBER	coord: 16..58
IPR029060	PIN-like domain superfamily	SUPERFAMILY	88723	PIN domain-like	coord: 16..56
IPR036279	5'-3' exonuclease, C-terminal domain superfamily	SUPERFAMILY	47807	5' to 3' exonuclease, C-terminal subdomain	coord: 73..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G012570.1	CmoCh11G012570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006284	base-excision repair
biological_process	GO:0043137	DNA replication, removal of RNA primer
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005654	nucleoplasm
molecular_function	GO:0008409	5'-3' exonuclease activity
molecular_function	GO:0017108	5'-flap endonuclease activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0004518	nuclease activity