CmoCh11G012250 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G012250
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	50S ribosomal protein L2, chloroplastic
Location	Cmo_Chr11: 7430132 .. 7431622 (-)
RNA-Seq Expression	CmoCh11G012250
Synteny	CmoCh11G012250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAGCATCGTTGTGGTAAAGATCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTAAATATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTTCCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCAATTTTCGACGGAATGAAAAAAACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATTCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGAACTATTGATTTACGTAATTGGAAGTAACCAATTAGGTTTACGACGAAACCTAGAAATCGATCACTGATCCAATTTGAGTACCTCCATAGGATAGACCTCAACAGAAAACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCGGTAGTTCCTCATATAAAATTATTGACTCTAGAGATATAGTAATATGGAGAAGACTAAATTGTTTCAAGCACCGACAGAACCAGAAGCGTCCCTTGTTTCAAAGAGAGGTGGACGGGTTATTCACATTTCATTTGATGGTCAGAGGCAAATTGAAAGCTAAGCAGTGGTAATTCTAAGGATTCCCGAGGGGAAAAATAGAGATGTCTCCTACGTTACCCGTAATATGTGGAAGTATCGACGTAATTTCATAGAGTCATTCGGTCTGAATGCTACATGAAGAACATAAGCCAGATGAAGGAACGGGAAGACCTAGGATGTAGAAGATCATAACATGAGTGATTCGGCGGATTTGGATTCCTATATATCCACTCATGTGGTACTTCATTGGACGATATATATAAGATCCATATGTATAGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTTATTCTTCGTCGCCGTAGTAAATAA

mRNA sequence

ATGGACAGCATCGTTGTGGTAAAGATCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTTCCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCAATTTTCGACGGAATGAAAAAAACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATTCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTTATTCTTCGTCGCCGTAGTAAATAA

Coding sequence (CDS)

ATGGACAGCATCGTTGTGGTAAAGATCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTTCCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCAATTTTCGACGGAATGAAAAAAACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATTCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTTATTCTTCGTCGCCGTAGTAAATAA

Protein sequence

MDSIVVVKIVMPEESLPQGIEGEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK

Homology

[Close]

BLAST of CmoCh11G012250 vs. ExPASy Swiss-Prot
Match: Q4VZK5 (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 2.8e-128
Identity = 237/278 (85.25%), Postives = 241/278 (86.69%), Query Frame = 0


Query: 20  IEGEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYIC 79
           I G+HRCGKGRNARGII+AGHRGGGHKRLYRKI+FRRNEK+IYGRIVTIEYDPNRNAYIC
Sbjct: 31  IYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYIC 90

Query: 80  LIHYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 139
           LIHYGDGEKRYILH RGAIIGDTIVSGTEVPIKMGNALPL                    
Sbjct: 91  LIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL-------------------- 150

Query: 140 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 199
                         TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 151 --------------TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 210

Query: 200 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 259
           GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 211 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 270

Query: 260 APIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK 298
           APIGRKKPATPWGYPALGRRSRKRNKYSDN ILRRRSK
Sbjct: 271 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of CmoCh11G012250 vs. ExPASy Swiss-Prot
Match: Q0ZIX7 (50S ribosomal protein L2, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 2.4e-127
Identity = 235/278 (84.53%), Postives = 239/278 (85.97%), Query Frame = 0


Query: 20  IEGEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYIC 79
           I G+HRCGKGRNARGII+AGHRGGGHKRLYRKI+FRRNEK+IYGRIVTIEYDPNRNAYIC
Sbjct: 31  IYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYIC 90

Query: 80  LIHYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 139
           LIHYGDGEKRYILH RGAIIGDTIVSGTEVPIKMGNALPL                    
Sbjct: 91  LIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL-------------------- 150

Query: 140 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 199
                         TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 151 --------------TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 210

Query: 200 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 259
           GEVRLISKNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 211 GEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 270

Query: 260 APIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK 298
           APIGRKKP TPWGYPALGRRSRKRNKYSDN ILRRRSK
Sbjct: 271 APIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of CmoCh11G012250 vs. ExPASy Swiss-Prot
Match: A6MM78 (50S ribosomal protein L2, chloroplastic OS=Buxus microphylla OX=153571 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 6.9e-127
Identity = 234/278 (84.17%), Postives = 238/278 (85.61%), Query Frame = 0


Query: 20  IEGEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYIC 79
           I G+HRCGKGRNARGII+AGHRGGGHKRLYRKI+FRRNEKNIYGRIVTIEYDPNRNAYIC
Sbjct: 29  IYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYDPNRNAYIC 88

Query: 80  LIHYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 139
           LIHYGDGEKRYILH RGAIIGDTIVSGTEVPIKMGNALPL                    
Sbjct: 89  LIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL-------------------- 148

Query: 140 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 199
                         TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 149 --------------TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 208

Query: 200 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 259
           GEVRLISKNCSATVGQVGN G NQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 209 GEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 268

Query: 260 APIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK 298
           APIGRKKP TPWGYPALGRRSRKRNKYSD+ ILRRRSK
Sbjct: 269 APIGRKKPTTPWGYPALGRRSRKRNKYSDSLILRRRSK 272

[Close]

BLAST of CmoCh11G012250 vs. ExPASy Swiss-Prot
Match: B1A976 (50S ribosomal protein L2, chloroplastic OS=Carica papaya OX=3649 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 6.9e-127
Identity = 235/278 (84.53%), Postives = 239/278 (85.97%), Query Frame = 0


Query: 20  IEGEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYIC 79
           I G+HRCGKGRNARGII+A HRGGGHKRLYRKI+FRRNEK+IYGRIVTIEYDPNRNAYIC
Sbjct: 31  IYGQHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYIC 90

Query: 80  LIHYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 139
           LIHYGDGEKRYILH RGAIIGDTIVSGTEVPIKMGNALPL                    
Sbjct: 91  LIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL-------------------- 150

Query: 140 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 199
                         TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 151 --------------TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 210

Query: 200 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 259
           GEVRLISKNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 211 GEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 270

Query: 260 APIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK 298
           APIGRKKPATPWGYPALGRRSRKRNKYSDN ILRRRSK
Sbjct: 271 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of CmoCh11G012250 vs. ExPASy Swiss-Prot
Match: B1NWJ1 (50S ribosomal protein L2, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 9.1e-127
Identity = 234/278 (84.17%), Postives = 239/278 (85.97%), Query Frame = 0


Query: 20  IEGEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYIC 79
           I G+HRCGKGRNARGII+A HRGGGHKRLYRKI+FRRNEK+IYGRIVTIEYDPNRNAYIC
Sbjct: 34  IYGQHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYIC 93

Query: 80  LIHYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 139
           LIHYGDGEKRYILH RGAIIGDTI+SGTEVPIKMGNALPL                    
Sbjct: 94  LIHYGDGEKRYILHPRGAIIGDTIISGTEVPIKMGNALPL-------------------- 153

Query: 140 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 199
                         TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 154 --------------TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 213

Query: 200 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 259
           GEVRLISKNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 214 GEVRLISKNCSATVGQVGNTGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 273

Query: 260 APIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK 298
           APIGRKKPATPWGYPALGRRSRKRNKYSDN ILRRRSK
Sbjct: 274 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 277

[Close]

BLAST of CmoCh11G012250 vs. ExPASy TrEMBL
Match: A0A6J5WEB6 (Ribosomal_L2_C domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS14630 PE=3 SV=1)

HSP 1 Score: 539.3 bits (1388), Expect = 1.0e-149
Identity = 269/278 (96.76%), Postives = 274/278 (98.56%), Query Frame = 0


Query: 20  IEGEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYIC 79
           I G+HRCGKGRNARGII+AGHRGGGHKRLYRKI+FRRNEK+IYGRIVTIEYDPNRNAYIC
Sbjct: 29  IYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYIC 88

Query: 80  LIHYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 139
           LIHYGDGEKRYILH RGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV
Sbjct: 89  LIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 148

Query: 140 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 199
           WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 149 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 208

Query: 200 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 259
           GEVRLISKNCSATVGQVGN GVNQKSLG+AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 209 GEVRLISKNCSATVGQVGNVGVNQKSLGKAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 268

Query: 260 APIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK 298
           APIGRKKPATPWGYPALGRRSRKRNKYSDN ILRRRSK
Sbjct: 269 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 306

[Close]

BLAST of CmoCh11G012250 vs. ExPASy TrEMBL
Match: A0A4Y1RG22 (PREDICTED: ribosomal L2 OS=Prunus dulcis OX=3755 GN=ALMOND_2B009478 PE=3 SV=1)

HSP 1 Score: 539.3 bits (1388), Expect = 1.0e-149
Identity = 269/278 (96.76%), Postives = 274/278 (98.56%), Query Frame = 0


Query: 20  IEGEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYIC 79
           I G+HRCGKGRNARGII+AGHRGGGHKRLYRKI+FRRNEK+IYGRIVTIEYDPNRNAYIC
Sbjct: 29  IYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYIC 88

Query: 80  LIHYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 139
           LIHYGDGEKRYILH RGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV
Sbjct: 89  LIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 148

Query: 140 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 199
           WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 149 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 208

Query: 200 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 259
           GEVRLISKNCSATVGQVGN GVNQKSLG+AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 209 GEVRLISKNCSATVGQVGNVGVNQKSLGKAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 268

Query: 260 APIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK 298
           APIGRKKPATPWGYPALGRRSRKRNKYSDN ILRRRSK
Sbjct: 269 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 306

[Close]

BLAST of CmoCh11G012250 vs. ExPASy TrEMBL
Match: A0A4Y1RFG4 (Ribosomal_L2_C domain-containing protein OS=Prunus dulcis OX=3755 GN=Prudu_013742 PE=3 SV=1)

HSP 1 Score: 539.3 bits (1388), Expect = 1.0e-149
Identity = 269/278 (96.76%), Postives = 274/278 (98.56%), Query Frame = 0


Query: 20  IEGEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYIC 79
           I G+HRCGKGRNARGII+AGHRGGGHKRLYRKI+FRRNEK+IYGRIVTIEYDPNRNAYIC
Sbjct: 30  IYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYIC 89

Query: 80  LIHYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 139
           LIHYGDGEKRYILH RGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV
Sbjct: 90  LIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 149

Query: 140 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 199
           WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 150 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 209

Query: 200 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 259
           GEVRLISKNCSATVGQVGN GVNQKSLG+AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 210 GEVRLISKNCSATVGQVGNVGVNQKSLGKAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 269

Query: 260 APIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK 298
           APIGRKKPATPWGYPALGRRSRKRNKYSDN ILRRRSK
Sbjct: 270 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 307

[Close]

BLAST of CmoCh11G012250 vs. ExPASy TrEMBL
Match: A0A540KI38 (Ribosomal_L2_C domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_040580 PE=3 SV=1)

HSP 1 Score: 539.3 bits (1388), Expect = 1.0e-149
Identity = 269/278 (96.76%), Postives = 274/278 (98.56%), Query Frame = 0


Query: 20  IEGEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYIC 79
           I G+HRCGKGRNARGII+AGHRGGGHKRLYRKI+FRRNEK+IYGRIVTIEYDPNRNAYIC
Sbjct: 31  IYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYIC 90

Query: 80  LIHYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 139
           LIHYGDGEKRYILH RGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV
Sbjct: 91  LIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 150

Query: 140 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 199
           WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 151 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 210

Query: 200 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 259
           GEVRLISKNCSATVGQVGN GVNQKSLG+AGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 211 GEVRLISKNCSATVGQVGNVGVNQKSLGKAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 270

Query: 260 APIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK 298
           APIGRKKPATPWGYPALGRRSRKRNKYSDN ILRRRSK
Sbjct: 271 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 308

[Close]

BLAST of CmoCh11G012250 vs. ExPASy TrEMBL
Match: A0A438GGK8 (50S ribosomal protein L2, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl2-A_1 PE=3 SV=1)

HSP 1 Score: 538.9 bits (1387), Expect = 1.3e-149
Identity = 269/278 (96.76%), Postives = 273/278 (98.20%), Query Frame = 0


Query: 20  IEGEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYIC 79
           I G+HRCGKGRNARGII+AGHRGGGHKRLYRKI+FRRNEK+IYGRIVTIEYDPNRNAYIC
Sbjct: 31  IYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYIC 90

Query: 80  LIHYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 139
           LIHYGDGEKRYILH RGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV
Sbjct: 91  LIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 150

Query: 140 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 199
           WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 151 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 210

Query: 200 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 259
           GEVRLISKNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 211 GEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 270

Query: 260 APIGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK 298
           APIGRKKP TPWGYPALGRRSRKRNKYSDN ILRRRSK
Sbjct: 271 APIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 308

[Close]

BLAST of CmoCh11G012250 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 439.9 bits (1130), Expect = 1.6e-123
Identity = 226/276 (81.88%), Postives = 233/276 (84.42%), Query Frame = 0


Query: 22  GEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYICLI 81
           G+H CGKGRNARGII+A HRGGGHKRLYRKI+FRRN K+IYGRIVTIEYDPNRNAYICLI
Sbjct: 33  GQHHCGKGRNARGIITARHRGGGHKRLYRKIDFRRNAKDIYGRIVTIEYDPNRNAYICLI 92

Query: 82  HYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWE 141
           HYGDGEKRYILH RGAIIGDTIVSGTEVPIKMGNALPL                      
Sbjct: 93  HYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL---------------------- 152

Query: 142 GVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGE 201
                       TDMPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGE
Sbjct: 153 ------------TDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGE 212

Query: 202 VRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAP 261
           VRLISKNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAP
Sbjct: 213 VRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAP 272

Query: 262 IGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK 298
           IGRKKP TPWGYPALGRR+RKR KYS+  ILRRRSK
Sbjct: 273 IGRKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK 274

[Close]

BLAST of CmoCh11G012250 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 439.9 bits (1130), Expect = 1.6e-123
Identity = 226/276 (81.88%), Postives = 233/276 (84.42%), Query Frame = 0


Query: 22  GEHRCGKGRNARGIISAGHRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYICLI 81
           G+H CGKGRNARGII+A HRGGGHKRLYRKI+FRRN K+IYGRIVTIEYDPNRNAYICLI
Sbjct: 33  GQHHCGKGRNARGIITARHRGGGHKRLYRKIDFRRNAKDIYGRIVTIEYDPNRNAYICLI 92

Query: 82  HYGDGEKRYILHSRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWE 141
           HYGDGEKRYILH RGAIIGDTIVSGTEVPIKMGNALPL                      
Sbjct: 93  HYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL---------------------- 152

Query: 142 GVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGE 201
                       TDMPLGTAIHNIEITLG+GGQLARAAGAVAKLIAKEGKSATLKLPSGE
Sbjct: 153 ------------TDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGE 212

Query: 202 VRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAP 261
           VRLISKNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAP
Sbjct: 213 VRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAP 272

Query: 262 IGRKKPATPWGYPALGRRSRKRNKYSDNFILRRRSK 298
           IGRKKP TPWGYPALGRR+RKR KYS+  ILRRRSK
Sbjct: 273 IGRKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK 274

[Close]

BLAST of CmoCh11G012250 vs. TAIR 10
Match: AT2G44065.1 (Ribosomal protein L2 family )

HSP 1 Score: 115.2 bits (287), Expect = 9.3e-26
Identity = 61/126 (48.41%), Postives = 77/126 (61.11%), Query Frame = 0


Query: 156 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVG 215
           M +GT IHNIE+  G+G ++ RAAG  AK++ +  K   L KLPSG+ + I+  C AT+G
Sbjct: 68  MRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIG 127

Query: 216 QVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT---PW 275
            V N     K L +AG   WLG RP VRGV MNP DHPHGGGEG++     +  T   PW
Sbjct: 128 TVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRGRTSVSPW 187

Query: 276 GYPALG 278
           G P  G
Sbjct: 188 GKPCKG 193

[Close]

BLAST of CmoCh11G012250 vs. TAIR 10
Match: AT2G44065.2 (Ribosomal protein L2 family )

HSP 1 Score: 115.2 bits (287), Expect = 9.3e-26
Identity = 61/126 (48.41%), Postives = 77/126 (61.11%), Query Frame = 0


Query: 156 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVG 215
           M +GT IHNIE+  G+G ++ RAAG  AK++ +  K   L KLPSG+ + I+  C AT+G
Sbjct: 68  MRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIG 127

Query: 216 QVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT---PW 275
            V N     K L +AG   WLG RP VRGV MNP DHPHGGGEG++     +  T   PW
Sbjct: 128 TVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRGRTSVSPW 187

Query: 276 GYPALG 278
           G P  G
Sbjct: 188 GKPCKG 193

[Close]

BLAST of CmoCh11G012250 vs. TAIR 10
Match: AT3G51190.1 (Ribosomal protein L2 family )

HSP 1 Score: 90.9 bits (224), Expect = 1.9e-18
Identity = 80/266 (30.08%), Postives = 114/266 (42.86%), Query Frame = 0


Query: 40  HRGGGHKRLYRKINFRRNEKNIYGRIVTIEYDPNRNAYICLIHYGD-----GEKRYILHS 99
           HR G  K  +R +++      + G +  I +DP R A +  + +        +K   + +
Sbjct: 23  HRKGPAK--FRSLDYGERNGYLKGLVTEIIHDPGRGAPLARVAFRHPFRYMKQKELFVAA 82

Query: 100 RGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKEESTST 159
            G   G  +  G +  + +GN LPL +I                                
Sbjct: 83  EGMYTGQYLYCGKKANLMVGNVLPLGSI-------------------------------- 142

Query: 160 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSAT--LKLPSGEVRLISKNCSAT 219
             P G  I N+E+ +G  G LARA+G  A +IA   +S T  +KLPSG  +++   C A 
Sbjct: 143 --PEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAM 202

Query: 220 VGQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGGE----GR 279
           +GQV   G  +K L +AG+          CW    PVVRGV MNPV+HPHGGG     G 
Sbjct: 203 IGQVAGGGRTEKPLLKAGNAYHKYKAKRNCW----PVVRGVAMNPVEHPHGGGNHQHIGH 248

Query: 280 APIGR--KKPATPWGYPALGRRSRKR 284
           A   R  K      G  A  R  R+R
Sbjct: 263 ASTVRRDKSAGAKVGQIAARRTGRRR 248

The following BLAST results are available for this feature:

BLAST of CmoCh11G012250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZK5	2.8e-128	85.25	50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=...	[more]
Q0ZIX7	2.4e-127	84.53	50S ribosomal protein L2, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl2-A PE=...	[more]
A6MM78	6.9e-127	84.17	50S ribosomal protein L2, chloroplastic OS=Buxus microphylla OX=153571 GN=rpl2-A...	[more]
B1A976	6.9e-127	84.53	50S ribosomal protein L2, chloroplastic OS=Carica papaya OX=3649 GN=rpl2-A PE=3 ...	[more]
B1NWJ1	9.1e-127	84.17	50S ribosomal protein L2, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl2-A P...	[more]

BLAST of CmoCh11G012250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J5WEB6	1.0e-149	96.76	Ribosomal_L2_C domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDH...	[more]
A0A4Y1RG22	1.0e-149	96.76	PREDICTED: ribosomal L2 OS=Prunus dulcis OX=3755 GN=ALMOND_2B009478 PE=3 SV=1	[more]
A0A4Y1RFG4	1.0e-149	96.76	Ribosomal_L2_C domain-containing protein OS=Prunus dulcis OX=3755 GN=Prudu_01374...	[more]
A0A540KI38	1.0e-149	96.76	Ribosomal_L2_C domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_040...	[more]
A0A438GGK8	1.3e-149	96.76	50S ribosomal protein L2, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl2-A_1 P...	[more]

BLAST of CmoCh11G012250 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00830.1	1.6e-123	81.88	ribosomal protein L2	[more]
ATCG01310.1	1.6e-123	81.88	ribosomal protein L2	[more]
AT2G44065.1	9.3e-26	48.41	Ribosomal protein L2 family	[more]
AT2G44065.2	9.3e-26	48.41	Ribosomal protein L2 family	[more]
AT3G51190.1	1.9e-18	30.08	Ribosomal protein L2 family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002171	Ribosomal protein L2	SMART	SM01383	Ribosomal_L2_2	coord: 29..105 e-value: 6.3E-32 score: 122.1
IPR002171	Ribosomal protein L2	PIRSF	PIRSF002158	RPL2p_RPL2a_RPL8e_RPL2o	coord: 152..297 e-value: 2.6E-52 score: 175.7 coord: 14..127 e-value: 1.8E-24 score: 84.4
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 154..295
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 20..127
IPR022669	Ribosomal protein L2, C-terminal	SMART	SM01382	Ribosomal_L2_C_2	coord: 111..274 e-value: 5.7E-73 score: 258.4
IPR022669	Ribosomal protein L2, C-terminal	PFAM	PF03947	Ribosomal_L2_C	coord: 155..272 e-value: 7.5E-49 score: 165.1
None	No IPR available	GENE3D	2.40.50.140		coord: 12..104 e-value: 1.1E-32 score: 113.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 281..297
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 247..297
None	No IPR available	PANTHER	PTHR13691:SF51	50S RIBOSOMAL PROTEIN L2, CHLOROPLASTIC	coord: 20..127
None	No IPR available	PANTHER	PTHR13691:SF51	50S RIBOSOMAL PROTEIN L2, CHLOROPLASTIC	coord: 154..295
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 105..216 e-value: 8.7E-36 score: 123.7
IPR005880	Ribosomal protein L2, bacterial/organellar-type	TIGRFAM	TIGR01171	TIGR01171	coord: 154..296 e-value: 5.3E-64 score: 214.2
IPR005880	Ribosomal protein L2, bacterial/organellar-type	HAMAP	MF_01320_B	Ribosomal_L2_B	coord: 2..296 score: 39.182503
IPR014726	Ribosomal protein L2, domain 3	GENE3D	4.10.950.10	Ribosomal protein L2, domain 3	coord: 217..296 e-value: 1.5E-34 score: 119.9
IPR022666	Ribosomal Proteins L2, RNA binding domain	PFAM	PF00181	Ribosomal_L2	coord: 29..105 e-value: 3.3E-27 score: 94.3
IPR022671	Ribosomal protein L2, conserved site	PROSITE	PS00467	RIBOSOMAL_L2	coord: 239..250
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 155..294
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 24..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G012250.1	CmoCh11G012250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003723	RNA binding