CmoCh11G010950 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G010950
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description30S ribosomal protein S31, mitochondrial
LocationCmo_Chr11: 6119038 .. 6119304 (+)
RNA-Seq ExpressionCmoCh11G010950
SyntenyCmoCh11G010950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGATGCAGTGGTGTGGCGCAGTAGCTAGGGGAGTGATGGCGGCGGAGCGCCGGTCGCCTTCACTAACGTCGTCAATGGCGGTGGAAGGACTGGTTCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGCTCGTACGGCAACGCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGGATCAAGGACAAAATCGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

mRNA sequence

ATGGCGATGATGCAGTGGTGTGGCGCAGTAGCTAGGGGAGTGATGGCGGCGGAGCGCCGGTCGCCTTCACTAACGTCGTCAATGGCGGTGGAAGGACTGGTTCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGCTCGTACGGCAACGCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGGATCAAGGACAAAATCGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

Coding sequence (CDS)

ATGGCGATGATGCAGTGGTGTGGCGCAGTAGCTAGGGGAGTGATGGCGGCGGAGCGCCGGTCGCCTTCACTAACGTCGTCAATGGCGGTGGAAGGACTGGTTCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGCTCGTACGGCAACGCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGGATCAAGGACAAAATCGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

Protein sequence

MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI
Homology
[Close]
BLAST of CmoCh11G010950 vs. ExPASy Swiss-Prot
Match: Q9SJU8 (30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g21290 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.0e-25
Identity = 59/98 (60.20%), Postives = 68/98 (69.39%), Query Frame = 0 

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPI----------LCGRGDKKTKKGKI 60
          MA MQWCGA+ R +M  +R S +L  S     L P           LCGRGDKKTKKGK 
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          FKGSYGN+R KK+K I+RIKDK+E+P STPWPLPFKLI
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

[Close]
BLAST of CmoCh11G010950 vs. ExPASy Swiss-Prot
Match: P47909 (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 3.7e-20
Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 0 

Query: 36 ILCGRGDKKTKKGKIFKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          + CGRGDKKTK+GK FKGSYGNARPK+EKKI+RIKD++EVP STPWPLPFKLI
Sbjct: 30 VTCGRGDKKTKRGKRFKGSYGNARPKREKKIERIKDRVEVPRSTPWPLPFKLI 82

[Close]
BLAST of CmoCh11G010950 vs. ExPASy Swiss-Prot
Match: P47910 (30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 PE=1 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 2.0e-05
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 0 

Query: 13 GVMAAERRSPSLTSSMAVEGLVPIL-CGRGDKKTKKGKIFKGSYGNARPKKEKK 66
          GV  +   + SL+SS++    +P++ CGRGD+KT KGK F  S+GNARPK + K
Sbjct: 28 GVSLSSPPTLSLSSSVSTSPALPLIYCGRGDRKTAKGKRFNHSFGNARPKNKNK 81

[Close]
BLAST of CmoCh11G010950 vs. ExPASy Swiss-Prot
Match: O80439 (30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS31 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.8e-04
Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = 0 

Query: 36 ILCGRGDKKTKKGKIFKGSYGNARPKKEKKIQRIKDKIEVPSSTP 81
          + CGRGD+KT KGK F  S+GNARP+ + K  R  +++ VP + P
Sbjct: 53 VYCGRGDRKTAKGKRFNHSFGNARPRNKSK-GRGPERVPVPPAPP 96

[Close]
BLAST of CmoCh11G010950 vs. ExPASy TrEMBL
Match: A0A6J1F3E9 (30S ribosomal protein S31, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111439636 PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.0e-41
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP
Sbjct: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]
BLAST of CmoCh11G010950 vs. ExPASy TrEMBL
Match: A0A6J1I644 (30S ribosomal protein S31, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111470248 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.9e-39
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0 

Query: 3  MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 62
          MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGN+RPKK
Sbjct: 1  MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNSRPKK 60

Query: 63 EKKIQRIKDKIEVPSSTPWPLPFKLI 89
          EKKIQRIKDK EVPSSTPWPLPFKLI
Sbjct: 61 EKKIQRIKDKNEVPSSTPWPLPFKLI 86

[Close]
BLAST of CmoCh11G010950 vs. ExPASy TrEMBL
Match: A0A5A7SX60 (30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G001030 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.0e-38
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 0 

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAM QWCGAVARGV+AAERRSPSLTSSMAVEGLVPILCGRGDKKTK+GK FKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDKIEVP STPWPLPFKLI
Sbjct: 61 KKEKKIERIKDKIEVPRSTPWPLPFKLI 88

[Close]
BLAST of CmoCh11G010950 vs. ExPASy TrEMBL
Match: A0A6J1GKP4 (30S ribosomal protein S31, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111455241 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.0e-38
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 0 

Query: 3  MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 62
          M QWCGA+A+ VMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK
Sbjct: 1  MAQWCGALAKRVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60

Query: 63 EKKIQRIKDKIEVPSSTPWPLPFKLI 89
          EKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 EKKIQRIKDKIEVPSSTPWPLPFKLI 86

[Close]
BLAST of CmoCh11G010950 vs. ExPASy TrEMBL
Match: A0A1S3BI88 (30S ribosomal protein S31, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490344 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.0e-38
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 0 

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAM QWCGAVARGV+AAERRSPSLTSSMAVEGLVPILCGRGDKKTK+GK FKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDKIEVP STPWPLPFKLI
Sbjct: 61 KKEKKIERIKDKIEVPRSTPWPLPFKLI 88

[Close]
BLAST of CmoCh11G010950 vs. NCBI nr
Match: XP_022933003.1 (30S ribosomal protein S31, mitochondrial [Cucurbita moschata] >XP_023529502.1 30S ribosomal protein S31, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo] >XP_023529503.1 30S ribosomal protein S31, mitochondrial isoform X2 [Cucurbita pepo subsp. pepo] >KAG6588415.1 30S ribosomal protein S31, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022258.1 30S ribosomal protein S31, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176.8 bits (447), Expect = 8.2e-41
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP
Sbjct: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]
BLAST of CmoCh11G010950 vs. NCBI nr
Match: XP_022971575.1 (30S ribosomal protein S31, mitochondrial [Cucurbita maxima])

HSP 1 Score: 169.9 bits (429), Expect = 1.0e-38
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0 

Query: 3  MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 62
          MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGN+RPKK
Sbjct: 1  MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNSRPKK 60

Query: 63 EKKIQRIKDKIEVPSSTPWPLPFKLI 89
          EKKIQRIKDK EVPSSTPWPLPFKLI
Sbjct: 61 EKKIQRIKDKNEVPSSTPWPLPFKLI 86

[Close]
BLAST of CmoCh11G010950 vs. NCBI nr
Match: XP_022952601.1 (30S ribosomal protein S31, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 166.0 bits (419), Expect = 1.5e-37
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 0 

Query: 3  MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 62
          M QWCGA+A+ VMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK
Sbjct: 1  MAQWCGALAKRVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60

Query: 63 EKKIQRIKDKIEVPSSTPWPLPFKLI 89
          EKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 EKKIQRIKDKIEVPSSTPWPLPFKLI 86

[Close]
BLAST of CmoCh11G010950 vs. NCBI nr
Match: XP_008448047.1 (PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo] >KAA0033759.1 30S ribosomal protein S31 [Cucumis melo var. makuwa] >TYK22378.1 30S ribosomal protein S31 [Cucumis melo var. makuwa])

HSP 1 Score: 166.0 bits (419), Expect = 1.5e-37
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 0 

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAM QWCGAVARGV+AAERRSPSLTSSMAVEGLVPILCGRGDKKTK+GK FKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDKIEVP STPWPLPFKLI
Sbjct: 61 KKEKKIERIKDKIEVPRSTPWPLPFKLI 88

[Close]
BLAST of CmoCh11G010950 vs. NCBI nr
Match: XP_011658557.1 (30S ribosomal protein S31, mitochondrial [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 2.5e-37
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 0 

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAM QW GAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDK+TK+GK FKGSYGNARP
Sbjct: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          KKEKKIQRIKDKIEVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]
BLAST of CmoCh11G010950 vs. TAIR 10
Match: AT2G21290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 114.8 bits (286), Expect = 3.6e-26
Identity = 59/98 (60.20%), Postives = 68/98 (69.39%), Query Frame = 0 

Query: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPI----------LCGRGDKKTKKGKI 60
          MA MQWCGA+ R +M  +R S +L  S     L P           LCGRGDKKTKKGK 
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKIEVPSSTPWPLPFKLI 89
          FKGSYGN+R KK+K I+RIKDK+E+P STPWPLPFKLI
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

[Close]
BLAST of CmoCh11G010950 vs. TAIR 10
Match: AT2G38140.1 (plastid-specific ribosomal protein 4 )

HSP 1 Score: 45.4 bits (106), Expect = 2.7e-05
Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = 0 

Query: 36 ILCGRGDKKTKKGKIFKGSYGNARPKKEKKIQRIKDKIEVPSSTP 81
          + CGRGD+KT KGK F  S+GNARP+ + K  R  +++ VP + P
Sbjct: 53 VYCGRGDRKTAKGKRFNHSFGNARPRNKSK-GRGPERVPVPPAPP 96

The following BLAST results are available for this feature:
BLAST of CmoCh11G010950 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SJU85.0e-2560.2030S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g... [more]
P479093.7e-2083.0230S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=3994... [more]
P479102.0e-0548.1530S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 P... [more]
O804393.8e-0448.8930S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS3... [more]
BLAST of CmoCh11G010950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1F3E94.0e-41100.0030S ribosomal protein S31, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1I6444.9e-3997.6730S ribosomal protein S31, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC11147... [more]
A0A5A7SX607.0e-3893.1830S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A6J1GKP47.0e-3895.3530S ribosomal protein S31, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A1S3BI887.0e-3893.1830S ribosomal protein S31, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490344... [more]
BLAST of CmoCh11G010950 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022933003.18.2e-41100.0030S ribosomal protein S31, mitochondrial [Cucurbita moschata] >XP_023529502.1 30... [more]
XP_022971575.11.0e-3897.6730S ribosomal protein S31, mitochondrial [Cucurbita maxima][more]
XP_022952601.11.5e-3795.3530S ribosomal protein S31, mitochondrial-like [Cucurbita moschata][more]
XP_008448047.11.5e-3793.18PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo] >KAA0033759.1... [more]
XP_011658557.12.5e-3794.3230S ribosomal protein S31, mitochondrial [Cucumis sativus][more]
BLAST of CmoCh11G010950 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G21290.13.6e-2660.20unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G38140.12.7e-0548.89plastid-specific ribosomal protein 4 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR03082630S ribosomal proteinTIGRFAMTIGR04560TIGR04560coord: 39..62
e-value: 1.8E-12
score: 45.0
IPR03082630S ribosomal proteinPFAMPF17067RPS31coord: 32..80
e-value: 1.5E-10
score: 41.1
IPR04469530S ribosomal protein S31, plantPANTHERPTHR3455030S RIBOSOMAL PROTEIN S31, CHLOROPLASTICcoord: 1..88
NoneNo IPR availablePANTHERPTHR34550:SF330S RIBOSOMAL PROTEIN S31, MITOCHONDRIALcoord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G010950.1CmoCh11G010950.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032544 plastid translation
cellular_component GO:0009536 plastid
cellular_component GO:0005840 ribosome