CmoCh11G007040 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G007040
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr11: 3398574 .. 3400174 (+)
RNA-Seq ExpressionCmoCh11G007040
SyntenyCmoCh11G007040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCAATTGCGCCGGCAGCACTTTCCTTTTGATTTCTATGATTTCTGCCATTTCGCATTCTGTAATTCGTCGATCATGCTTCTGCAGGCTCCGAAACCTGTTACGAGTCCCGTTCCTGAAGCGTGGTACTCAACCATTGCGCTCTCAGTGATCGCTCCGATGGCCTCTTCGTTGCCGCTTCGATTTTCATGTAAGTTCTATTGAAACCGTCTCCTGAAGTGTAATGACTTCTGTTTGATGTTAACTATTCTGTGTGAAACGATGGGATTGCCCTATACAAGTAGATTAGAGTCTGTTTACTTTCACGGCATGATAGGATCTGGAATGCTTCCTTTAACTAACCATCACATAGCTTTGTCAAACCCTTTTTCCAATCTGAATAATCTTTCACATTTTCAACCAAAGTACTGCTCGGTTTTTCTCCTCTTTGGCTTCAAATGTAAATGCTCCGGTTAATATCAACTATTCAAAACATATCATAGCAACCCCATCCTAGCTTTCCTTATTTAAAACATTGCATAGCTTATCATAACAGACCACCCTAATATCATTTGGCATATCATATAGCGACGTATACATGACATCACATATAAAGGCTTATCACACATATAACATGTGTAAGACTTTCGGGCATGTGTCATCATACATAAAGTAATTCTTCAAACCAAACCGATAGTAGAGTCACTTACTTGGTTGGCCTAGGCTGAAGCTACTACGACCCCTTGATGCTACTAGCTTAATATTGCTCTCTGAAATTCAATTCTACCTCAGAAATCCCACCATCATACACTAAAATTCTACTATAAAAATTGACTCATTTAATTTTACATAAAAATAGTTTAAACTAATAAAAAGGTAATCATACTAACCTTAAATGCTTCCGAAGAGTTGAAACGGTTAGGAACACGGATCTCCACAATGGTATGATAGTGTCTACTTCGAACATAAGCTCTCATGGGTTTATAATCAAGGAATACTATGTCCATTGGTACGAGGTCTTTTGGGGAAGCCCGAAGCAAAGCCATGAGAGCTTATGTTCAAAGTAGACAATATCATACCATTGTGGAGATTTGTGTTCATCTAACGAAAACATATCAGTTGAAAGGAACCGCTCAAGTTGGAGGAAAGGAAGCAATTGTTGTAACTTAGAAAACCGAGACCTCCCTTTTATAATGAAGTCCTAACTCCCTACTTTCTCAACCTAAGACGTGACAGATGTCGTGTTCCTATTATTCCAATAGATTAAATCCTAACTATCATCTTCTCTTGGAGCCTATGTTTGGGGTCACTCTAACCATATTGAATATTATTTGCAGCTATGAAGCTACATCTTCTAGAAAAATCCGTATTCTGGCCAAGGAACTTACTGGAGGTGCAGTCGCCTTTGTCTTCTTGGTATGCATCTTTCTGTACATTTCTCTTATCAGTTTTGTGCACATTTTTTCACCCACCAAACTTACTATACCAAACGACCTTTATTACTCTTTCTTACATTGCCATTATTACTCCAAATCCACATTAGGAAATATTTTTATGCATTATTCAAAATTTCCAAATTGTCTGATTTTTTTAGTAATGATTTTGTGATTAGTTTCTAG

mRNA sequence

ATGATTCAATTGCGCCGGCAGCACTTTCCTTTTGATTTCTATGATTTCTGCCATTTCGCATTCTGTAATTCGTCGATCATGCTTCTGCAGGCTCCGAAACCTGTTACGAGTCCCGTTCCTGAAGCGTGGTACTCAACCATTGCGCTCTCAGTGATCGCTCCGATGGCCTCTTCGTTGCCGCTTCGATTTTCATCTATGAAGCTACATCTTCTAGAAAAATCCGTATTCTGGCCAAGGAACTTACTGGAGGTGCAGTCGCCTTTGTCTTCTTGTTTCTAG

Coding sequence (CDS)

ATGATTCAATTGCGCCGGCAGCACTTTCCTTTTGATTTCTATGATTTCTGCCATTTCGCATTCTGTAATTCGTCGATCATGCTTCTGCAGGCTCCGAAACCTGTTACGAGTCCCGTTCCTGAAGCGTGGTACTCAACCATTGCGCTCTCAGTGATCGCTCCGATGGCCTCTTCGTTGCCGCTTCGATTTTCATCTATGAAGCTACATCTTCTAGAAAAATCCGTATTCTGGCCAAGGAACTTACTGGAGGTGCAGTCGCCTTTGTCTTCTTGTTTCTAG

Protein sequence

MIQLRRQHFPFDFYDFCHFAFCNSSIMLLQAPKPVTSPVPEAWYSTIALSVIAPMASSLPLRFSSMKLHLLEKSVFWPRNLLEVQSPLSSCF
Homology
[Close]
BLAST of CmoCh11G007040 vs. NCBI nr
Match: KAG7021935.1 (hypothetical protein SDJN02_15663, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.5 bits (306), Expect = 1.9e-24
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 29  LQAPKPVTSPVPEAWYSTIALSVIAPMASSLPLRFSSMKLHLLEKSVFWPRNLLEVQSPL 88
           L APKPVTSPVPEAWYSTIALSVIAPMASSLPLRFSSMKLHLLEKSVFWPRNLLEVQSPL
Sbjct: 205 LMAPKPVTSPVPEAWYSTIALSVIAPMASSLPLRFSSMKLHLLEKSVFWPRNLLEVQSPL 264

Query: 89  SSCF 93
           SS +
Sbjct: 265 SSWY 268

[Close]
BLAST of CmoCh11G007040 vs. NCBI nr
Match: KAG6588039.1 (hypothetical protein SDJN03_16604, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.2 bits (300), Expect = 9.6e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 31 APKPVTSPVPEAWYSTIALSVIAPMASSLPLRFSSMKLHLLEKSVFWPRNLLEVQSPLSS 90
          APKPVTSPVPEAWYSTIALSVIAPMASSLPLRFSSMKLHLLEKSVFWPRNLLEVQSPLSS
Sbjct: 2  APKPVTSPVPEAWYSTIALSVIAPMASSLPLRFSSMKLHLLEKSVFWPRNLLEVQSPLSS 61

[Close]
BLAST of CmoCh11G007040 vs. NCBI nr
Match: KAE8653440.1 (hypothetical protein Csa_007067 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-07
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 0 

Query: 31 APKPVTSPVPEAWYSTIALSVIAPMASSLPLRFSSMKLHLLEKSVFWPRNLLEVQSPLSS 90
          APKPVTS +  + + T  +S+IA MAS LPL   SMK  LLEKSV WPR+LLE Q PLSS
Sbjct: 2  APKPVTSHLLNSSFPT-GVSMIASMASLLPLPLLSMKRRLLEKSVVWPRDLLEEQLPLSS 61

Query: 91 C 92
          C
Sbjct: 62 C 61

The following BLAST results are available for this feature:
BLAST of CmoCh11G007040 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh11G007040 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh11G007040 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021935.11.9e-2495.31hypothetical protein SDJN02_15663, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6588039.19.6e-24100.00hypothetical protein SDJN03_16604, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8653440.12.1e-0762.30hypothetical protein Csa_007067 [Cucumis sativus][more]
BLAST of CmoCh11G007040 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G007040.1CmoCh11G007040.1mRNA