CmoCh11G006090 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G006090
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Coiled-coil domain-containing protein 9-like
Location	Cmo_Chr11: 2923425 .. 2926338 (-)
RNA-Seq Expression	CmoCh11G006090
Synteny	CmoCh11G006090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATTTGATTTTCGGGAGAAGAAAACAAGAGGCGTTTGTGGCGGCTATTTGATTTTGGGGAATCGGCCACCACAATTTTCACTCGGTCCCGACCTGACGAGGAGGATTCACTGCAGGGGAAGAGAAAGATCATGGCGTCGATTTGCCCGTTCAGTTCTAAAACCCTAGTTTTGCCGTCGGCGGCCTACCTACCAGTATCCTCCTCATCTACAAGCCATAGTTTCTGTGTTCGTGGCTGCAGATGCTCTTTCCCAAACAGGCCAATTGCGAATTCTAATTTGATAATTGGGAGAAGGAGAACGGGGAGGCTGGTGGTTCGAATGGCCCCGGAGGAAGAGAAACTTACTCGTCGCAATCCTCTCGATTTCCCGATTGTAACTTTCTCGCTCTCCTTTATTTCCCTGCGTGTTTGATGTTGTTCGGTTTGTTTTCATGGGATTTTTGTGTTTTTGCTTTCCATGGATGGAGATTCTGCTTTCTGTTTTTATGTAACTTGGCTATTGGATTAGTTAGGGTGGAAAGTCGGAGCATTTCCTAGGATTTGATACATTTACTGTTCAATTTTATCACCGATGGTTGTTTAAAAGGCTTATTCTTGACTTATCCTGCCATGTCTTCCCTGCAAATTGTATCTTGCTGATAGTTTCGGTCATTTCTATATTTTCCTTGCGAAGTATCCATCCTCGAGCTCTAGATAAAGTGGGCTGTATCTATCTTAGGACGAGGGGCATCGACCATCATAATGTTTGTTTATTCATATTGTCGCATATGTTGCGAGAGAATGGACTATACTTTTCGGGTTATCGATGTTTAATGCACTGTAGTTGTTAACCTGAGCTTGAAAGAACATATTGGCAAATGGCAAATACAGTTTTGGGTATGTGGATTCTAGTAGATCTCATGACATTCATTTGAGGCGTGATATCTGTTTGTTCAATTTGTCTCCTGTACTGCTCCGGGATTTCTACTTTTAACGCTTTTGTAAATTAAAAGTCATGTCATTATGTTGTTCATAAATTTTTTATGAATTTATTTGTTAGGGTGCATTTTTTGGCGGTCGTTTCAGTTTATAATATGGAATTACTGATGTTCTCACCTGTTTTAGTTGATAAGTTAATTTATATGTGAAGTGCGTGATAGGTTATAGCTGGTGTTCTTCGCGTTGAATGCTTCTTGACTTTTTGGTTGTAGGAGTGGGATAGGCCTAAGCCAGGTCGTAGACCAGACATCTTTCCTCAATTTAGCCCCATGAAAACACCATTGCCACCACCATTGCCATGCGATCCCCCTGAAGAAGACGAAGAGGAGGAAGAGAAGAAAGAGGAAGAAGAGGAAAATCCTGACAAGGAAAATCCTGATGAGCCTGAGAAGCAGTAGATGTAGTCTTTTGAATAATTCCCTGAGTTCCTTCCTTCTTTTCCATTTTCACTTTGTTTTTTGATAGGCTGAAAGCATTAGAAATCCTAAGGGGATGATGAGCTGAGATATTCAACCTTGACCCAAACATGTTTGAGTGCTACTACTGATATTGCAATTCTGTATTGAATCAAAAATCTTTTTAGGATTTCCTATTCTCTTGAGTTTCAATCCCCCACTTCAGACAATGTATTTTATGAATAATTATCATGAATGATATGCCTTGTCTCCGATTTCTAGTCCATGCTTGTATGGTTCAACTCTATATTTGAGTGTTGTTTAAGAGCAAATCTCTAGAAGCTGCAGCAGGATATCACAAGAGCGTTTCACGTTATAACCAGACAAATCCCAGCATAATTTGTAACAACTGGCTTTTTTTTTTCTTTCACTTTGAATGTAACTTCTTGTTGTTTTCCAAGAATATGACTGAATGCAATTCTTAATCATTAGAGAACAGTCTTTCCTCTTCTTAGAGGCTGGTCGGTATTAGCAGGGATGAAGGGCAGTTGAATCAGGTATTCTTATCTACTCTTCTTGCACTCTGAATCATATTTTAACAATTGGGGCTAGATTTATGTAGCCTTTGACTTTGTAGCTTACCACTATCTATGTAGTATATAGTGGTTCTCACTTTGGAGAATGCATAATAGAAGTAGTACTTAAAAATTCGTTGGTTACAAACTAACTACTTTTGGAAATAAGTCAAACTTGCATTCCTCGCCAGAAATATTGATAGTGCGCAGGTCCCAGTGTCAGCAGTTGATGATTTGCAGCTTCTTTCAGGTGCTTCCTTTCTCGCTTTCTCTCTATTTGAAGGATCATCCATCGGCAGAGCATCTGCTTTGGCTTCCTCTCTTATTCAACTCATGGTATGTACTATCAACTTTAACTTCACAATCTTTCTTCATCTTTCTTGATTCTTCAATCTCCTTTTCTGATGACAACAGAACGTAGGTATCTGATATTCAATAGTTGGGTTAGTTTCTTTTTATGTCCTCAACTGTCAGGTAGTATTAAACAACCTTCTCCTTTTTTTTTCGGCTGCAGAATCTTACTCCATTTCTGTTCAGGTCACTGGTAAGGCTGCTGCTATCGCTAATTGTCCAGCCTGTAGCCTCTGTCTCAACCTTGCTTTTTTACAGTGACGTTCTCCCTCAGCATATGGTTTCGGAGAGATTGGTTCGTCATGAACTTCTTGACCGCGAAAACTACCTATTCCATTTTCTCGTCAACTTTTTGAAGTGCTTTTGGTGAAGAAAGAAGAAGATGATGATAAGGGCACATCTTTTTCAGCGACCCATTTCATGAATTTTCCCCCTCGACATCCGGCCTTTCTGATGCCATTGGAGCACTATTTTGAAGGTTATTTCTCAAAAACTACTTTGCTTGGGACTGAAAATTGCAATAAAATGATATTATGTTTCTTGCTTTCACTGTTGTCATTAGGTAAATGCTTCTTTCTTGTTCATAATTTCTTAGTGCTGTGTCCACTCCCCCA

mRNA sequence

CTATTTGATTTTCGGGAGAAGAAAACAAGAGGCGTTTGTGGCGGCTATTTGATTTTGGGGAATCGGCCACCACAATTTTCACTCGGTCCCGACCTGACGAGGAGGATTCACTGCAGGGGAAGAGAAAGATCATGGCGTCGATTTGCCCGTTCAGTTCTAAAACCCTAGTTTTGCCGTCGGCGGCCTACCTACCAGTATCCTCCTCATCTACAAGCCATAGTTTCTGTGTTCGTGGCTGCAGATGCTCTTTCCCAAACAGGCCAATTGCGAATTCTAATTTGATAATTGGGAGAAGGAGAACGGGGAGGCTGGTGGTTCGAATGGCCCCGGAGGAAGAGAAACTTACTCGTCGCAATCCTCTCGATTTCCCGATTGAGTGGGATAGGCCTAAGCCAGGTCGTAGACCAGACATCTTTCCTCAATTTAGCCCCATGAAAACACCATTGCCACCACCATTGCCATGCGATCCCCCTGAAGAAGACGAAGAGGAGGAAGAGAAGAAAGAGGAAGAAGAGGAAAATCCTGACAAGGAAAATCCTGATGAGCCTGAGAAGCAGGATGAAGGGCAGTTGAATCAGGTCCCAGTGTCAGCAGTTGATGATTTGCAGCTTCTTTCAGGTGCTTCCTTTCTCGCTTTCTCTCTATTTGAAGGATCATCCATCGGCAGAGCATCTGCTTTGGCTTCCTCTCTTATTCAACTCATGAATCTTACTCCATTTCTGTTCAGGTCACTGGTAAGGCTGCTGCTATCGCTAATTGTCCAGCCTGTAGCCTCTGTCTCAACCTTGCTTTTTTACAGTGACGTTCTCCCTCAGCATATGGTTTCGGAGAGATTGGTTCGTCATGAACTTCTTGACCGCGAAAACTACCTATTCCATTTTCTCGTCAACTTTTTGAAGTGCTTTTGGTGAAGAAAGAAGAAGATGATGATAAGGGCACATCTTTTTCAGCGACCCATTTCATGAATTTTCCCCCTCGACATCCGGCCTTTCTGATGCCATTGGAGCACTATTTTGAAGGTTATTTCTCAAAAACTACTTTGCTTGGGACTGAAAATTGCAATAAAATGATATTATGTTTCTTGCTTTCACTGTTGTCATTAGGTAAATGCTTCTTTCTTGTTCATAATTTCTTAGTGCTGTGTCCACTCCCCCA

Coding sequence (CDS)

ATGGCGTCGATTTGCCCGTTCAGTTCTAAAACCCTAGTTTTGCCGTCGGCGGCCTACCTACCAGTATCCTCCTCATCTACAAGCCATAGTTTCTGTGTTCGTGGCTGCAGATGCTCTTTCCCAAACAGGCCAATTGCGAATTCTAATTTGATAATTGGGAGAAGGAGAACGGGGAGGCTGGTGGTTCGAATGGCCCCGGAGGAAGAGAAACTTACTCGTCGCAATCCTCTCGATTTCCCGATTGAGTGGGATAGGCCTAAGCCAGGTCGTAGACCAGACATCTTTCCTCAATTTAGCCCCATGAAAACACCATTGCCACCACCATTGCCATGCGATCCCCCTGAAGAAGACGAAGAGGAGGAAGAGAAGAAAGAGGAAGAAGAGGAAAATCCTGACAAGGAAAATCCTGATGAGCCTGAGAAGCAGGATGAAGGGCAGTTGAATCAGGTCCCAGTGTCAGCAGTTGATGATTTGCAGCTTCTTTCAGGTGCTTCCTTTCTCGCTTTCTCTCTATTTGAAGGATCATCCATCGGCAGAGCATCTGCTTTGGCTTCCTCTCTTATTCAACTCATGAATCTTACTCCATTTCTGTTCAGGTCACTGGTAAGGCTGCTGCTATCGCTAATTGTCCAGCCTGTAGCCTCTGTCTCAACCTTGCTTTTTTACAGTGACGTTCTCCCTCAGCATATGGTTTCGGAGAGATTGGTTCGTCATGAACTTCTTGACCGCGAAAACTACCTATTCCATTTTCTCGTCAACTTTTTGAAGTGCTTTTGGTGA

Protein sequence

MASICPFSSKTLVLPSAAYLPVSSSSTSHSFCVRGCRCSFPNRPIANSNLIIGRRRTGRLVVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEEEKKEEEEENPDKENPDEPEKQDEGQLNQVPVSAVDDLQLLSGASFLAFSLFEGSSIGRASALASSLIQLMNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDVLPQHMVSERLVRHELLDRENYLFHFLVNFLKCFW

Homology

[Close]

BLAST of CmoCh11G006090 vs. ExPASy TrEMBL
Match: A0A6J1F0T5 (uncharacterized protein LOC111441100 OS=Cucurbita moschata OX=3662 GN=LOC111441100 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 2.1e-69
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MASICPFSSKTLVLPSAAYLPVSSSSTSHSFCVRGCRCSFPNRPIANSNLIIGRRRTGRL 60
           MASICPFSSKTLVLPSAAYLPVSSSSTSHSFCVRGCRCSFPNRPIANSNLIIGRRRTGRL
Sbjct: 1   MASICPFSSKTLVLPSAAYLPVSSSSTSHSFCVRGCRCSFPNRPIANSNLIIGRRRTGRL 60

Query: 61  VVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120
           VVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE
Sbjct: 61  VVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120

Query: 121 EEKKEEEEENPDKENPDEPEKQ 143
           EEKKEEEEENPDKENPDEPEKQ
Sbjct: 121 EEKKEEEEENPDKENPDEPEKQ 142

[Close]

BLAST of CmoCh11G006090 vs. ExPASy TrEMBL
Match: A0A6J1HQ01 (uncharacterized protein LOC111465629 OS=Cucurbita maxima OX=3661 GN=LOC111465629 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 5.6e-67
Identity = 139/142 (97.89%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MASICPFSSKTLVLPSAAYLPVSSSSTSHSFCVRGCRCSFPNRPIANSNLIIGRRRTGRL 60
           MASIC FSSKTLVLPSAAYL VSSSSTSHSFCVRGCRCSFPNRPIANSNLIIG+RRTGRL
Sbjct: 1   MASICLFSSKTLVLPSAAYLQVSSSSTSHSFCVRGCRCSFPNRPIANSNLIIGKRRTGRL 60

Query: 61  VVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120
           VVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE
Sbjct: 61  VVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120

Query: 121 EEKKEEEEENPDKENPDEPEKQ 143
           EEKKEEEEENPDKENPDEPEKQ
Sbjct: 121 EEKKEEEEENPDKENPDEPEKQ 142

[Close]

BLAST of CmoCh11G006090 vs. ExPASy TrEMBL
Match: A0A6J1JI28 (uncharacterized protein LOC111485300 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485300 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 3.3e-59
Identity = 127/142 (89.44%), Postives = 131/142 (92.25%), Query Frame = 0


Query: 1   MASICPFSSKTLVLPSAAYLPVSSSSTSHSFCVRGCRCSFPNRPIANSNLIIGRRRTGRL 60
           MASIC  SSKTL LPSAAYLP+SSSSTSHS C  GCR SFPN+PI  SNLII RRRTGR 
Sbjct: 1   MASICLLSSKTLALPSAAYLPISSSSTSHSCCFGGCRFSFPNKPIPTSNLIIVRRRTGRH 60

Query: 61  VVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120
           VVRMAPEEEK+TRRNPLDFPIEW+RPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE
Sbjct: 61  VVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120

Query: 121 EEKKEEEEENPDKENPDEPEKQ 143
           EEKKEEEEENPDKENPDEPEKQ
Sbjct: 121 EEKKEEEEENPDKENPDEPEKQ 142

[Close]

BLAST of CmoCh11G006090 vs. ExPASy TrEMBL
Match: A0A6J1HA36 (uncharacterized protein LOC111461515 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461515 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.8e-57
Identity = 125/143 (87.41%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MASICPFSSKTLVLPSAAYLPV-SSSSTSHSFCVRGCRCSFPNRPIANSNLIIGRRRTGR 60
           MASIC  SSKTLVLPSAAYLP+ SSSST+HS C  GCR SFP++PI+ SNLI+ RRRTGR
Sbjct: 1   MASICLLSSKTLVLPSAAYLPISSSSSTTHSCCFGGCRFSFPSKPISTSNLIVVRRRTGR 60

Query: 61  LVVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120
            VVRMAPEEEK+TRRNPLDFPIEW+RPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE
Sbjct: 61  HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120

Query: 121 EEEKKEEEEENPDKENPDEPEKQ 143
           EEEKKEEEEENPDKENPDEPEKQ
Sbjct: 121 EEEKKEEEEENPDKENPDEPEKQ 143

[Close]

BLAST of CmoCh11G006090 vs. ExPASy TrEMBL
Match: A0A6J1CVD6 (uncharacterized protein LOC111014560 OS=Momordica charantia OX=3673 GN=LOC111014560 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 9.0e-57
Identity = 120/140 (85.71%), Postives = 129/140 (92.14%), Query Frame = 0


Query: 1   MASICPFSSKTLVLPSAAYLPVSSSSTSHSFCVRGCRCSFPNRPIANSNLIIGRRRTGRL 60
           MASIC FSSKTL LPSA YL +SSSSTSHS     CRCSFP +P++NS+L+IGRRRTG+ 
Sbjct: 1   MASICLFSSKTLALPSAVYLHISSSSTSHSCSFGNCRCSFPYKPVSNSHLVIGRRRTGKQ 60

Query: 61  VVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120
           VVRMAP+EEKLTRRNPLDFPIEW+RPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE
Sbjct: 61  VVRMAPDEEKLTRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120

Query: 121 EEKKEEEEENPDKENPDEPE 141
           EEKKEEEEENPDKENPDEPE
Sbjct: 121 EEKKEEEEENPDKENPDEPE 140

[Close]

BLAST of CmoCh11G006090 vs. NCBI nr
Match: XP_022933792.1 (uncharacterized protein LOC111441100 [Cucurbita moschata])

HSP 1 Score: 272.3 bits (695), Expect = 4.2e-69
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MASICPFSSKTLVLPSAAYLPVSSSSTSHSFCVRGCRCSFPNRPIANSNLIIGRRRTGRL 60
           MASICPFSSKTLVLPSAAYLPVSSSSTSHSFCVRGCRCSFPNRPIANSNLIIGRRRTGRL
Sbjct: 1   MASICPFSSKTLVLPSAAYLPVSSSSTSHSFCVRGCRCSFPNRPIANSNLIIGRRRTGRL 60

Query: 61  VVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120
           VVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE
Sbjct: 61  VVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120

Query: 121 EEKKEEEEENPDKENPDEPEKQ 143
           EEKKEEEEENPDKENPDEPEKQ
Sbjct: 121 EEKKEEEEENPDKENPDEPEKQ 142

[Close]

BLAST of CmoCh11G006090 vs. NCBI nr
Match: XP_023530781.1 (uncharacterized protein LOC111793229 [Cucurbita pepo subsp. pepo] >KAG6587954.1 hypothetical protein SDJN03_16519, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021844.1 hypothetical protein SDJN02_15572 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268.5 bits (685), Expect = 6.1e-68
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MASICPFSSKTLVLPSAAYLPVSSSSTSHSFCVRGCRCSFPNRPIANSNLIIGRRRTGRL 60
           MASIC FSSKTLVLPSAAYLPVSSSSTSHSFCVRGCRCSFPNRPIANSNLIIGRRRTGRL
Sbjct: 1   MASICLFSSKTLVLPSAAYLPVSSSSTSHSFCVRGCRCSFPNRPIANSNLIIGRRRTGRL 60

Query: 61  VVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120
           VVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE
Sbjct: 61  VVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120

Query: 121 EEKKEEEEENPDKENPDEPEKQ 143
           EEKKEEEEENPDKENPDEPEKQ
Sbjct: 121 EEKKEEEEENPDKENPDEPEKQ 142

[Close]

BLAST of CmoCh11G006090 vs. NCBI nr
Match: XP_022965880.1 (uncharacterized protein LOC111465629 [Cucurbita maxima])

HSP 1 Score: 264.2 bits (674), Expect = 1.2e-66
Identity = 139/142 (97.89%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MASICPFSSKTLVLPSAAYLPVSSSSTSHSFCVRGCRCSFPNRPIANSNLIIGRRRTGRL 60
           MASIC FSSKTLVLPSAAYL VSSSSTSHSFCVRGCRCSFPNRPIANSNLIIG+RRTGRL
Sbjct: 1   MASICLFSSKTLVLPSAAYLQVSSSSTSHSFCVRGCRCSFPNRPIANSNLIIGKRRTGRL 60

Query: 61  VVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120
           VVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE
Sbjct: 61  VVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120

Query: 121 EEKKEEEEENPDKENPDEPEKQ 143
           EEKKEEEEENPDKENPDEPEKQ
Sbjct: 121 EEKKEEEEENPDKENPDEPEKQ 142

[Close]

BLAST of CmoCh11G006090 vs. NCBI nr
Match: KAG6589907.1 (hypothetical protein SDJN03_15330, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 257.3 bits (656), Expect = 1.4e-64
Identity = 155/202 (76.73%), Postives = 166/202 (82.18%), Query Frame = 0


Query: 1   MASICPFSSKTLVLPSAAYLPV-SSSSTSHSFCVRGCRCSFPNRPIANSNLIIGRRRTGR 60
           MASIC  SSKTLVLPSAAYLP+ SSSSTSHS C  GCR SFP++PI+ SNLI+ RRRTGR
Sbjct: 1   MASICLLSSKTLVLPSAAYLPMSSSSSTSHSCCFGGCRFSFPSKPISTSNLIVVRRRTGR 60

Query: 61  LVVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120
            VVRMAPEEEK+TRRNPLDFPIEW+RPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE
Sbjct: 61  HVVRMAPEEEKITRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEE 120

Query: 121 EEEKKEEEEENPDKENPDEPEKQDEGQLNQVPVSAVDDLQLLSGASFLAFSLFEGSSIGR 180
           EEEKKEEEEENPDKENPDEPEKQ+  +  QVPV+AVDDLQL S       SL    S G 
Sbjct: 121 EEEKKEEEEENPDKENPDEPEKQNI-ESAQVPVAAVDDLQLFS-------SLKNHPSTGH 180

Query: 181 ASALASSLIQLMNLTPFLFRSL 202
              L   L +LMNLTP LFRSL
Sbjct: 181 LLWL-PLLFKLMNLTPTLFRSL 193

[Close]

BLAST of CmoCh11G006090 vs. NCBI nr
Match: XP_038879472.1 (uncharacterized protein LOC120071334 [Benincasa hispida])

HSP 1 Score: 244.2 bits (622), Expect = 1.2e-60
Identity = 128/142 (90.14%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 1   MASICPFSSKTLVLPSAAYLPVSSSSTSHSFCVRGCRCSFPNRPIANSNLIIGRRRTGRL 60
           MASI  FSSKTLVLPSA YLP+SSSST+H+ C  GCRCSFPN+PI+ SNLIIGRRRTGR 
Sbjct: 1   MASISLFSSKTLVLPSATYLPISSSSTNHTCCFGGCRCSFPNKPISTSNLIIGRRRTGRQ 60

Query: 61  VVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120
           VVRMAPEEEKLTRRNPLDFPIEW+RPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE
Sbjct: 61  VVRMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEE 120

Query: 121 EEKKEEEEENPDKENPDEPEKQ 143
           EEKKEEEEENPDKENPDEPEKQ
Sbjct: 121 EEKKEEEEENPDKENPDEPEKQ 142

[Close]

BLAST of CmoCh11G006090 vs. TAIR 10
Match: AT2G17240.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24506.1); Has 2795 Blast hits to 943 proteins in 155 species: Archae - 0; Bacteria - 388; Metazoa - 809; Fungi - 72; Plants - 153; Viruses - 54; Other Eukaryotes - 1319 (source: NCBI BLink). )

HSP 1 Score: 139.8 bits (351), Expect = 3.1e-33
Identity = 92/145 (63.45%), Postives = 106/145 (73.10%), Query Frame = 0


Query: 1   MASICPFSSKTLVLPSAAYLPVSSSSTSHSFCVRGCRCSFPNRPIANSNLIIGRRRTGR- 60
           MAS+C  S++ L  PS   L + S+ T  S   R   CS  +R  A S++     R  R 
Sbjct: 1   MASLC--SARFLPSPS---LDILSTKTKISSDSRSLGCS-SSRVFAFSSVHRSSSRRNRN 60

Query: 61  --LVVRMAPEEEKLTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEED 120
              VV MAPEEEKLTRRNPLDFPIEW+RPKPGRRPDIFP+FSPMKTPLPPP+P DPPEED
Sbjct: 61  QLQVVSMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPKFSPMKTPLPPPMPYDPPEED 120

Query: 121 EEEEEKKEEEEENPDKENPDEPEKQ 143
           EEEEEKKEEEEENPD+E  ++PEKQ
Sbjct: 121 EEEEEKKEEEEENPDQEEEEQPEKQ 139

[Close]

BLAST of CmoCh11G006090 vs. TAIR 10
Match: AT3G24506.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17240.1); Has 4864 Blast hits to 709 proteins in 125 species: Archae - 0; Bacteria - 592; Metazoa - 786; Fungi - 33; Plants - 410; Viruses - 61; Other Eukaryotes - 2982 (source: NCBI BLink). )

HSP 1 Score: 124.8 bits (312), Expect = 1.0e-28
Identity = 80/133 (60.15%), Postives = 97/133 (72.93%), Query Frame = 0


Query: 21  PVSSSSTSH---------SFCVRGCRCSFPNRPIANSNLIIGRRRTGRL-VVRMAPEEEK 80
           P+SSSS +          S    G  CSF    IA     + R+   +L VV MAPEEEK
Sbjct: 20  PLSSSSLNRAAPSIFSPFSRINHGFSCSF----IAVQRFALSRKTRKQLQVVAMAPEEEK 79

Query: 81  LTRRNPLDFPIEWDRPKPGRRPDIFPQFSPMKTPLPPPLPCDPPEEDEEEEEKKEEE-EE 140
           LTRRNPLDFPIEW+RPKPGRRPDIFP+FSPMK+PLPPP+P DPPEE+EEEEEKKEEE E+
Sbjct: 80  LTRRNPLDFPIEWERPKPGRRPDIFPKFSPMKSPLPPPMPYDPPEEEEEEEEKKEEETED 139

Query: 141 NPDKENPDEPEKQ 143
           +P+KE+ D+P+ +
Sbjct: 140 DPEKEDEDQPDNR 148

The following BLAST results are available for this feature:

BLAST of CmoCh11G006090 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh11G006090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F0T5	2.1e-69	100.00	uncharacterized protein LOC111441100 OS=Cucurbita moschata OX=3662 GN=LOC1114411...	[more]
A0A6J1HQ01	5.6e-67	97.89	uncharacterized protein LOC111465629 OS=Cucurbita maxima OX=3661 GN=LOC111465629...	[more]
A0A6J1JI28	3.3e-59	89.44	uncharacterized protein LOC111485300 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HA36	1.8e-57	87.41	uncharacterized protein LOC111461515 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1CVD6	9.0e-57	85.71	uncharacterized protein LOC111014560 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]

BLAST of CmoCh11G006090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933792.1	4.2e-69	100.00	uncharacterized protein LOC111441100 [Cucurbita moschata]	[more]
XP_023530781.1	6.1e-68	99.30	uncharacterized protein LOC111793229 [Cucurbita pepo subsp. pepo] >KAG6587954.1 ...	[more]
XP_022965880.1	1.2e-66	97.89	uncharacterized protein LOC111465629 [Cucurbita maxima]	[more]
KAG6589907.1	1.4e-64	76.73	hypothetical protein SDJN03_15330, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038879472.1	1.2e-60	90.14	uncharacterized protein LOC120071334 [Benincasa hispida]	[more]

BLAST of CmoCh11G006090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G17240.1	3.1e-33	63.45	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G24506.1	1.0e-28	60.15	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..147
None	No IPR available	PANTHER	PTHR35713:SF4	SUBFAMILY NOT NAMED	coord: 7..140
None	No IPR available	PANTHER	PTHR35713	ARGININE/SERINE-RICH-LIKE SPLICING FACTOR	coord: 7..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G006090.1	CmoCh11G006090.1	mRNA