CmoCh11G005630 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G005630
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Cmo_Chr11: 2736948 .. 2737303 (-)
RNA-Seq Expression	CmoCh11G005630
Synteny	CmoCh11G005630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCATTCGGGAGTCAAGCCGGATTCTTATACTTTTCCTTTTCTATTCAAGTCTTGCGCGAAGCTAGCCTCTGCCCATGGAGGGAAACAGATTCGTGCGTATGTCTTGAAGCTTGGGTTTGGTTTGATGTGTATATTCATAATTCGCTCATCATCAATGCCCATTTGGTGTTTGATCAAAGTAATTTAAGGGATGCAATTTCTTTCACTGCACCAATTGCGGGTTACGCTATGTGGGGTAATACGGATCGCGCACGGAAAGTGTTTGATGAAATGCCTGTTAGAGACGTGGTGTCTTGGAATGCTATGGTTGCTGGCTATGGGCAAACTAGTCGATCCAAGAGGGATCGTTAA

mRNA sequence

ATGATTCATTCGGGAGTCAAGCCGGATTCTTATACTTTTCCTTTTCTATTCAAGTCTTGCGCGAAGCTAGCCTCTGCCCATGGAGGGAAACAGATTCGTGCGTATGTCTTGAAGCTTGGGTTTGGTTTGATGGATGCAATTTCTTTCACTGCACCAATTGCGGGTTACGCTATGTGGGGTAATACGGATCGCGCACGGAAAGTGTTTGATGAAATGCCTGTTAGAGACGTGGTGTCTTGGAATGCTATGGTTGCTGGCTATGGGCAAACTAGTCGATCCAAGAGGGATCGTTAA

Coding sequence (CDS)

ATGATTCATTCGGGAGTCAAGCCGGATTCTTATACTTTTCCTTTTCTATTCAAGTCTTGCGCGAAGCTAGCCTCTGCCCATGGAGGGAAACAGATTCGTGCGTATGTCTTGAAGCTTGGGTTTGGTTTGATGGATGCAATTTCTTTCACTGCACCAATTGCGGGTTACGCTATGTGGGGTAATACGGATCGCGCACGGAAAGTGTTTGATGAAATGCCTGTTAGAGACGTGGTGTCTTGGAATGCTATGGTTGCTGGCTATGGGCAAACTAGTCGATCCAAGAGGGATCGTTAA

Protein sequence

MIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRAYVLKLGFGLMDAISFTAPIAGYAMWGNTDRARKVFDEMPVRDVVSWNAMVAGYGQTSRSKRDR

Homology

[Close]

BLAST of CmoCh11G005630 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.2e-20
Identity = 52/124 (41.94%), Postives = 68/124 (54.84%), Query Frame = 0


Query: 1   MIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRAYVLKLGFGL----------------- 60
           MI  G+ P+SYTFPF+ KSCAK  +   G+QI  +VLKLG  L                 
Sbjct: 125 MISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGR 184

Query: 61  -------------MDAISFTAPIAGYAMWGNTDRARKVFDEMPVRDVVSWNAMVAGYGQT 95
                         D +S+TA I GYA  G  + A+K+FDE+PV+DVVSWNAM++GY +T
Sbjct: 185 LEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAET 244

[Close]

BLAST of CmoCh11G005630 vs. ExPASy Swiss-Prot
Match: Q9SN39 (Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DOT4 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-16
Identity = 41/87 (47.13%), Postives = 58/87 (66.67%), Query Frame = 0


Query: 1   MIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRAYVLKLGFGLMDAISFTAPIAGYAMWG 60
           M+ SGV+ DSYTF  + KS + L S HGG+Q+  ++LK GFG  +++   + +A Y    
Sbjct: 186 MMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVG-NSLVAFYLKNQ 245

Query: 61  NTDRARKVFDEMPVRDVVSWNAMVAGY 88
             D ARKVFDEM  RDV+SWN+++ GY
Sbjct: 246 RVDSARKVFDEMTERDVISWNSIINGY 271

[Close]

BLAST of CmoCh11G005630 vs. ExPASy Swiss-Prot
Match: O49619 (Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H27 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.6e-16
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 0


Query: 1   MIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRAYVLKLGFGLMDAISFTAPIAGYAMWG 60
           M+ +GVK D++T+PF+ KS A ++S   GK+I A V+KLGF + D     + I+ Y   G
Sbjct: 121 MVFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGF-VSDVYVCNSLISLYMKLG 180

Query: 61  NTDRARKVFDEMPVRDVVSWNAMVAGY 88
               A KVF+EMP RD+VSWN+M++GY
Sbjct: 181 CAWDAEKVFEEMPERDIVSWNSMISGY 206

[Close]

BLAST of CmoCh11G005630 vs. ExPASy Swiss-Prot
Match: Q9LUJ2 (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H56 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-15
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 1   MIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRAYVLKLGFGLMDAISFTAPIAGYAMWG 60
           M++SG+ PD YTFPF   +CAK  +   G QI   ++K+G+   D     + +  YA  G
Sbjct: 125 MMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYA-KDLFVQNSLVHFYAECG 184

Query: 61  NTDRARKVFDEMPVRDVVSWNAMVAGYGQTSRSK 95
             D ARKVFDEM  R+VVSW +M+ GY +   +K
Sbjct: 185 ELDSARKVFDEMSERNVVSWTSMICGYARRDFAK 217

[Close]

BLAST of CmoCh11G005630 vs. ExPASy Swiss-Prot
Match: Q9LUS3 (Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E91 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.1e-15
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 1   MIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRAYVLKLGFGLMDAISFTAPIAGYAMWG 60
           M++SGV+P  YT+PF+ K+CA L +   GK I ++V    F   D    TA +  YA  G
Sbjct: 94  MLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFA-TDMYVCTALVDFYAKCG 153

Query: 61  NTDRARKVFDEMPVRDVVSWNAMVAGY 88
             + A KVFDEMP RD+V+WNAM++G+
Sbjct: 154 ELEMAIKVFDEMPKRDMVAWNAMISGF 179

[Close]

BLAST of CmoCh11G005630 vs. ExPASy TrEMBL
Match: A0A6J1HAU9 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111461670 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 7.0e-31
Identity = 74/124 (59.68%), Postives = 81/124 (65.32%), Query Frame = 0


Query: 1   MIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRAYVLKLGF------------------- 60
           MIH+GV+P+SYTFPFL KSCAKLASA  GKQI A+VLKLGF                   
Sbjct: 117 MIHAGVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGE 176

Query: 61  -----------GLMDAISFTAPIAGYAMWGNTDRARKVFDEMPVRDVVSWNAMVAGYGQT 95
                         DAISFTA IAGY +WG  DRARK+FDEMPVRDVVSWNAM+AGY QT
Sbjct: 177 INYAQLVFDQSNFRDAISFTALIAGYVLWGYMDRARKLFDEMPVRDVVSWNAMIAGYAQT 236

[Close]

BLAST of CmoCh11G005630 vs. ExPASy TrEMBL
Match: A0A6J1JHE6 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111485125 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.6e-30
Identity = 73/124 (58.87%), Postives = 81/124 (65.32%), Query Frame = 0


Query: 1   MIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRAYVLKLGF------------------- 60
           MIH+GV+P+SYTFPFL KSCA+LASA  GKQI A+VLKLGF                   
Sbjct: 117 MIHAGVEPNSYTFPFLLKSCARLASAREGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGE 176

Query: 61  -----------GLMDAISFTAPIAGYAMWGNTDRARKVFDEMPVRDVVSWNAMVAGYGQT 95
                         DAISFTA IAGY +WG  DRARK+FDEMPVRDVVSWNAM+AGY QT
Sbjct: 177 INYAQLVFDQSNFRDAISFTALIAGYVLWGYMDRARKLFDEMPVRDVVSWNAMIAGYAQT 236

[Close]

BLAST of CmoCh11G005630 vs. ExPASy TrEMBL
Match: A0A0A0LU28 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G306800 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.0e-30
Identity = 73/124 (58.87%), Postives = 82/124 (66.13%), Query Frame = 0


Query: 1   MIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRAYVLKLGF------------------- 60
           MI+SGV+P+SYTFPFL KSCAKLASAH GKQI A+VLKLGF                   
Sbjct: 120 MIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGE 179

Query: 61  -----------GLMDAISFTAPIAGYAMWGNTDRARKVFDEMPVRDVVSWNAMVAGYGQT 95
                         DAISFTA IAGYA+WG  DRAR++FDEMPV+DVVSWNAM+AGY Q 
Sbjct: 180 MNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQM 239

[Close]

BLAST of CmoCh11G005630 vs. ExPASy TrEMBL
Match: A0A5A7TTJ1 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold64G00470 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.7e-29
Identity = 72/124 (58.06%), Postives = 81/124 (65.32%), Query Frame = 0


Query: 1   MIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRAYVLKLGF------------------- 60
           MI+SGV+P+SYTFPFL KSCAKLASA  GKQI A+VLKLGF                   
Sbjct: 120 MIYSGVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGE 179

Query: 61  -----------GLMDAISFTAPIAGYAMWGNTDRARKVFDEMPVRDVVSWNAMVAGYGQT 95
                         DAISFTA IAGYA+WG  DRAR++FDEMPV+DVVSWNAM+AGY Q 
Sbjct: 180 MNNAQLIFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQM 239

[Close]

BLAST of CmoCh11G005630 vs. ExPASy TrEMBL
Match: A0A1S3CMX0 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103502738 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.7e-29
Identity = 72/124 (58.06%), Postives = 81/124 (65.32%), Query Frame = 0


Query: 1   MIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRAYVLKLGF------------------- 60
           MI+SGV+P+SYTFPFL KSCAKLASA  GKQI A+VLKLGF                   
Sbjct: 120 MIYSGVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGE 179

Query: 61  -----------GLMDAISFTAPIAGYAMWGNTDRARKVFDEMPVRDVVSWNAMVAGYGQT 95
                         DAISFTA IAGYA+WG  DRAR++FDEMPV+DVVSWNAM+AGY Q 
Sbjct: 180 MNNAQLIFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQM 239

[Close]

BLAST of CmoCh11G005630 vs. NCBI nr
Match: KAG6587915.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168.7 bits (426), Expect = 2.5e-38
Identity = 84/96 (87.50%), Postives = 84/96 (87.50%), Query Frame = 0


Query: 1   MIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRAYVLKLGFGLMDAISFTAPIAGYAMWG 60
           MIHSGVKPDSYTFPFLFKS AKLASAHGGKQIRA          DAISFTAPIAGYAMWG
Sbjct: 21  MIHSGVKPDSYTFPFLFKSWAKLASAHGGKQIRA----------DAISFTAPIAGYAMWG 80

Query: 61  NTDRARKVFDEMPVRDVVSWNAMVAGYGQTSRSKRD 97
           NTDRARKVF EMPVRDVVSWNAMVAGYGQTSRSKRD
Sbjct: 81  NTDRARKVFGEMPVRDVVSWNAMVAGYGQTSRSKRD 106

[Close]

BLAST of CmoCh11G005630 vs. NCBI nr
Match: XP_038878535.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 143.3 bits (360), Expect = 1.1e-30
Identity = 74/124 (59.68%), Postives = 82/124 (66.13%), Query Frame = 0


Query: 1   MIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRAYVLKLGF------------------- 60
           MI+SGV+P+SYTFPFL KSCAKLASAH GKQI A++LKLGF                   
Sbjct: 120 MIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHLLKLGFQSDVFIHTSLINMYAQSGE 179

Query: 61  -----------GLMDAISFTAPIAGYAMWGNTDRARKVFDEMPVRDVVSWNAMVAGYGQT 95
                         DAISFTA IAGYA+WG  D ARK+FDEMPVRDVVSWNAM+AGY QT
Sbjct: 180 MNNAQLVFDQSNFRDAISFTALIAGYALWGYMDHARKLFDEMPVRDVVSWNAMIAGYAQT 239

[Close]

BLAST of CmoCh11G005630 vs. NCBI nr
Match: XP_022961045.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Cucurbita moschata])

HSP 1 Score: 142.9 bits (359), Expect = 1.5e-30
Identity = 74/124 (59.68%), Postives = 81/124 (65.32%), Query Frame = 0


Query: 1   MIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRAYVLKLGF------------------- 60
           MIH+GV+P+SYTFPFL KSCAKLASA  GKQI A+VLKLGF                   
Sbjct: 117 MIHAGVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGE 176

Query: 61  -----------GLMDAISFTAPIAGYAMWGNTDRARKVFDEMPVRDVVSWNAMVAGYGQT 95
                         DAISFTA IAGY +WG  DRARK+FDEMPVRDVVSWNAM+AGY QT
Sbjct: 177 INYAQLVFDQSNFRDAISFTALIAGYVLWGYMDRARKLFDEMPVRDVVSWNAMIAGYAQT 236

[Close]

BLAST of CmoCh11G005630 vs. NCBI nr
Match: KAG6589865.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.9 bits (359), Expect = 1.5e-30
Identity = 74/124 (59.68%), Postives = 81/124 (65.32%), Query Frame = 0


Query: 1   MIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRAYVLKLGF------------------- 60
           MIH+GV+P+SYTFPFL KSCAKLASA  GKQI A+VLKLGF                   
Sbjct: 117 MIHAGVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGE 176

Query: 61  -----------GLMDAISFTAPIAGYAMWGNTDRARKVFDEMPVRDVVSWNAMVAGYGQT 95
                         DAISFTA IAGY +WG  DRARK+FDEMPVRDVVSWNAM+AGY QT
Sbjct: 177 INYAQLVFDQSNFRDAISFTALIAGYVLWGYMDRARKLFDEMPVRDVVSWNAMIAGYAQT 236

[Close]

BLAST of CmoCh11G005630 vs. NCBI nr
Match: XP_023515625.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.9 bits (359), Expect = 1.5e-30
Identity = 74/124 (59.68%), Postives = 81/124 (65.32%), Query Frame = 0


Query: 1   MIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRAYVLKLGF------------------- 60
           MIH+GV+P+SYTFPFL KSCAKLASA  GKQI A+VLKLGF                   
Sbjct: 117 MIHAGVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGE 176

Query: 61  -----------GLMDAISFTAPIAGYAMWGNTDRARKVFDEMPVRDVVSWNAMVAGYGQT 95
                         DAISFTA IAGY +WG  DRARK+FDEMPVRDVVSWNAM+AGY QT
Sbjct: 177 INYAQLVFDQSNFRDAISFTALIAGYVLWGYMDRARKLFDEMPVRDVVSWNAMIAGYAQT 236

[Close]

BLAST of CmoCh11G005630 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 97.4 bits (241), Expect = 6.5e-21
Identity = 52/124 (41.94%), Postives = 68/124 (54.84%), Query Frame = 0


Query: 1   MIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRAYVLKLGFGL----------------- 60
           MI  G+ P+SYTFPF+ KSCAK  +   G+QI  +VLKLG  L                 
Sbjct: 125 MISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGR 184

Query: 61  -------------MDAISFTAPIAGYAMWGNTDRARKVFDEMPVRDVVSWNAMVAGYGQT 95
                         D +S+TA I GYA  G  + A+K+FDE+PV+DVVSWNAM++GY +T
Sbjct: 185 LEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAET 244

[Close]

BLAST of CmoCh11G005630 vs. TAIR 10
Match: AT4G18750.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-17
Identity = 41/87 (47.13%), Postives = 58/87 (66.67%), Query Frame = 0


Query: 1   MIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRAYVLKLGFGLMDAISFTAPIAGYAMWG 60
           M+ SGV+ DSYTF  + KS + L S HGG+Q+  ++LK GFG  +++   + +A Y    
Sbjct: 186 MMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVG-NSLVAFYLKNQ 245

Query: 61  NTDRARKVFDEMPVRDVVSWNAMVAGY 88
             D ARKVFDEM  RDV+SWN+++ GY
Sbjct: 246 RVDSARKVFDEMTERDVISWNSIINGY 271

[Close]

BLAST of CmoCh11G005630 vs. TAIR 10
Match: AT4G35130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 2.6e-17
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 0


Query: 1   MIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRAYVLKLGFGLMDAISFTAPIAGYAMWG 60
           M+ +GVK D++T+PF+ KS A ++S   GK+I A V+KLGF + D     + I+ Y   G
Sbjct: 121 MVFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGF-VSDVYVCNSLISLYMKLG 180

Query: 61  NTDRARKVFDEMPVRDVVSWNAMVAGY 88
               A KVF+EMP RD+VSWN+M++GY
Sbjct: 181 CAWDAEKVFEEMPERDIVSWNSMISGY 206

[Close]

BLAST of CmoCh11G005630 vs. TAIR 10
Match: AT3G22690.1 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 49784 Blast hits to 14716 proteins in 280 species: Archae - 2; Bacteria - 10; Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0; Other Eukaryotes - 904 (source: NCBI BLink). )

HSP 1 Score: 84.0 bits (206), Expect = 7.5e-17
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 1   MIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRAYVLKLGFGLMDAISFTAPIAGYAMWG 60
           M++SG+ PD YTFPF   +CAK  +   G QI   ++K+G+   D     + +  YA  G
Sbjct: 125 MMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYA-KDLFVQNSLVHFYAECG 184

Query: 61  NTDRARKVFDEMPVRDVVSWNAMVAGYGQTSRSK 95
             D ARKVFDEM  R+VVSW +M+ GY +   +K
Sbjct: 185 ELDSARKVFDEMSERNVVSWTSMICGYARRDFAK 217

[Close]

BLAST of CmoCh11G005630 vs. TAIR 10
Match: AT3G22690.2 (INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic process, photosystem I assembly, thylakoid membrane organization, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1). )

HSP 1 Score: 84.0 bits (206), Expect = 7.5e-17
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 1   MIHSGVKPDSYTFPFLFKSCAKLASAHGGKQIRAYVLKLGFGLMDAISFTAPIAGYAMWG 60
           M++SG+ PD YTFPF   +CAK  +   G QI   ++K+G+   D     + +  YA  G
Sbjct: 125 MMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYA-KDLFVQNSLVHFYAECG 184

Query: 61  NTDRARKVFDEMPVRDVVSWNAMVAGYGQTSRSK 95
             D ARKVFDEM  R+VVSW +M+ GY +   +K
Sbjct: 185 ELDSARKVFDEMSERNVVSWTSMICGYARRDFAK 217

The following BLAST results are available for this feature:

BLAST of CmoCh11G005630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LN01	9.2e-20	41.94	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
Q9SN39	1.6e-16	47.13	Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis t...	[more]
O49619	3.6e-16	47.13	Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidop...	[more]
Q9LUJ2	1.1e-15	42.55	Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX...	[more]
Q9LUS3	3.1e-15	45.98	Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana OX...	[more]

BLAST of CmoCh11G005630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HAU9	7.0e-31	59.68	pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Cucurbit...	[more]
A0A6J1JHE6	1.6e-30	58.87	pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Cucurbit...	[more]
A0A0A0LU28	2.0e-30	58.87	DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G3068...	[more]
A0A5A7TTJ1	1.7e-29	58.06	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3CMX0	1.7e-29	58.06	pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Cucumis ...	[more]

BLAST of CmoCh11G005630 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587915.1	2.5e-38	87.50	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]
XP_038878535.1	1.1e-30	59.68	pentatricopeptide repeat-containing protein At1g08070, chloroplastic isoform X1 ...	[more]
XP_022961045.1	1.5e-30	59.68	pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Cucurbita ...	[more]
KAG6589865.1	1.5e-30	59.68	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]
XP_023515625.1	1.5e-30	59.68	pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Cucurbita ...	[more]

BLAST of CmoCh11G005630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08070.1	6.5e-21	41.94	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G18750.1	1.2e-17	47.13	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G35130.1	2.6e-17	47.13	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G22690.1	7.5e-17	42.55	CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012...	[more]
AT3G22690.2	7.5e-17	42.55	INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic pro...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 48..78 e-value: 7.6E-6 score: 23.8
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 53..75 e-value: 0.001 score: 19.1 coord: 78..92 e-value: 0.41 score: 11.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 45..79 score: 8.977363
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..95 e-value: 7.8E-16 score: 60.3
None	No IPR available	PANTHER	PTHR47924	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 1..92
None	No IPR available	PANTHER	PTHR47924:SF1	SUBFAMILY NOT NAMED	coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G005630.1	CmoCh11G005630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding