CmoCh11G005610 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G005610
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr11: 2735309 .. 2735754 (-)
RNA-Seq ExpressionCmoCh11G005610
SyntenyCmoCh11G005610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCTTCAGACGATGGATCAGGATCGTCGAGGCATCAAGATCGCACACAGCGACAGACAACACCTGATAATCCACCTTGATGGTTTATATTTTGATTCTCATGCTGTAAGGATGGTTGGTTAAACAGGTTTGCTCAATCTGTGTGGCAGCAGGTATCAATTTCCCACAATTTCCCACATGGAAAGAAAGATGGAGGCTGTTCCTTGCTGCCTTTATCATGTGTTCCGTTGATTCTGGATCAATTCTGGTTCGAATCTTGTAATTTACTGCACCTCCAGTCATTTAATCTCTTTCTAACTTTCAATAAAATTACTCTGTTTTCACAGGAAATGGTAAATTCAGCCTGGACCATCCATCTTCTATGTCAGCTCCTTGGATATCCAGCCTCAAACAAACAAACACAAAAGGAGATTCTTGTTTTGATGATGGATATAATGGAATAA

mRNA sequence

ATGACTCTTCAGACGATGGATCAGGATCGTCGAGGCATCAAGATCGCACACAGCGACAGACAACACCTGATAATCCACCTTGATGGTTTATATTTTGATTCTCATGCTGTAAGGATGGTTTGCTCAATCTGTGTGGCAGCAGGTATCAATTTCCCACAATTTCCCACATGGAAAGAAAGATGGAGGCTGTTCCTTGCTGCCTTTATCATGTGTTCCGTTGATTCTGGATCAATTCTGGAAATGGTAAATTCAGCCTGGACCATCCATCTTCTATGTCAGCTCCTTGGATATCCAGCCTCAAACAAACAAACACAAAAGGAGATTCTTGTTTTGATGATGGATATAATGGAATAA

Coding sequence (CDS)

ATGACTCTTCAGACGATGGATCAGGATCGTCGAGGCATCAAGATCGCACACAGCGACAGACAACACCTGATAATCCACCTTGATGGTTTATATTTTGATTCTCATGCTGTAAGGATGGTTTGCTCAATCTGTGTGGCAGCAGGTATCAATTTCCCACAATTTCCCACATGGAAAGAAAGATGGAGGCTGTTCCTTGCTGCCTTTATCATGTGTTCCGTTGATTCTGGATCAATTCTGGAAATGGTAAATTCAGCCTGGACCATCCATCTTCTATGTCAGCTCCTTGGATATCCAGCCTCAAACAAACAAACACAAAAGGAGATTCTTGTTTTGATGATGGATATAATGGAATAA

Protein sequence

MTLQTMDQDRRGIKIAHSDRQHLIIHLDGLYFDSHAVRMVCSICVAAGINFPQFPTWKERWRLFLAAFIMCSVDSGSILEMVNSAWTIHLLCQLLGYPASNKQTQKEILVLMMDIME
Homology
[Close]
BLAST of CmoCh11G005610 vs. ExPASy TrEMBL
Match: A0A6J1KPY8 (uncharacterized protein LOC111497207 OS=Cucurbita maxima OX=3661 GN=LOC111497207 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.3e-12
Identity = 48/82 (58.54%), Postives = 53/82 (64.63%), Query Frame = 0 

Query: 62  RLFLAAFIMCSV-------DSGSIL-------------------EMVNSAWTIHLLCQLL 118
           RLFLAAFIMCS+       +S ++L                   EMVNS WTIHLLCQLL
Sbjct: 144 RLFLAAFIMCSLILDQFWFESCNLLDLQSFNLFLTFNKITLFSQEMVNSTWTIHLLCQLL 203

[Close]
BLAST of CmoCh11G005610 vs. NCBI nr
Match: XP_023003696.1 (uncharacterized protein LOC111497207 [Cucurbita maxima])

HSP 1 Score: 81.6 bits (200), Expect = 4.8e-12
Identity = 48/82 (58.54%), Postives = 53/82 (64.63%), Query Frame = 0 

Query: 62  RLFLAAFIMCSV-------DSGSIL-------------------EMVNSAWTIHLLCQLL 118
           RLFLAAFIMCS+       +S ++L                   EMVNS WTIHLLCQLL
Sbjct: 144 RLFLAAFIMCSLILDQFWFESCNLLDLQSFNLFLTFNKITLFSQEMVNSTWTIHLLCQLL 203

The following BLAST results are available for this feature:
BLAST of CmoCh11G005610 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh11G005610 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KPY82.3e-1258.54uncharacterized protein LOC111497207 OS=Cucurbita maxima OX=3661 GN=LOC111497207... [more]
BLAST of CmoCh11G005610 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023003696.14.8e-1258.54uncharacterized protein LOC111497207 [Cucurbita maxima][more]
BLAST of CmoCh11G005610 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G005610.1CmoCh11G005610.1mRNA