CmoCh11G005430 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G005430
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Ribosomal protein
Location	Cmo_Chr11: 2642681 .. 2644392 (-)
RNA-Seq Expression	CmoCh11G005430
Synteny	CmoCh11G005430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTAGGGTTTAGGATTTAGGGTTTTGTATTGATTTCTGTTTTAACATTTTTCAATATCAGTAACAACTTCTGTAAATCGCTCGGGAAATCTTTACTTTAAGTGCGGATTTATACTTATTTCCAAGGCTTCTCGTTCTGGAATTTATGCGTTCTGTTCTCTTTCAATTTGTTCTTTACGCATAGGTTGCTTGTTTCGATTATCTTCTCCGAGTTTTTTTTATTTTGAATGATTAAGGAAGAATTCCTTACTATGTTGAGGGGTAGGGCTCATTGGGTTTCTACAAATCCTCTGATGACTGTCGGGAAGAATTCCTTACAGAGTTTTGCCTTGTAGATCCATGATTTGGCCATTTTGTGCTTTCAGTGTATACTTTCTCTTTTCTTTAATTTCATTGTTGGAATTTGCAATAGTGAGATGTGATAGTTTACATCGCATTTGACTGCCGCTTTATGTCTTGGCTTCTTTTGTTTTCCTTCATACAGTCATGAAAGTCCGTGCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACGGTGAGGCGTCGAGGTCGAGTATATATATACTGCTCTGCCAACCCCAAACACAAGCAACGCCAAGGCCTATCAACATTTGCAAGTGAAGCTCCATCTCCTTCCTTGTAAGTACTTCCTTTTCTTTTTTATTTGGGTGTTGTCTATTATTAGTCTTGTACAATTTAAACAATCTGTTAAAGATGGAAAACTGTAAAGAATTATGTAATTTGCTTAACTTAAGGACGGACAATTTATTACTTGGCAGTAATTTATGAATGTAGTTCGAGTTTATGTAAAACATAAATGGCTGAACTTGTTAATGTAAAATTGTGTTCCTCAGCACCGAAAAGTGTGTTTTTTTTTTTTTTGTTTTAATGTGAGGATGAAGCTGAGGCCAGATTCTTGGAAATTAGTAGCTTAAGTTTGACACTCATAAGTCTTCTTCTAGTTCCATCCTCTACGATGGAGCTGGAGATTAATTTTGGGGATAGACGGAAGTCATTTTTCCATTTTCATGATTAATAAGCTCAGTACACTTCTTGTTCACATATCCGTATATGGTATGAATGGTATGCAGGTTTTAACTTGGGATTAACCACTGGCGAAATGCATTAAAGTTCGCTCATTTTTCAGGTTCTCCAGAAGTGAGGTGAAGCAAGAGATTCTTCCCAGTCATAGCTCGCGAACAGGGCTAGCCTCTCTCATCCCCCAAAAGCACGAGCCAACAATGTTGTTTGGTTGGAGAATGGGTCTGGCTTCAATTCTGTGGAAGAAACAAAATTAGAGCTTAGTCGACACAAGGACTGATTTTGTGTGCCATGGCAATGCTGCTGCTACATTGATAATTATTAGTTACTCTTTGAACTTCTTTCGTGATAAAAGATGAAGCACTTCTGCTCTCAGATTTGGTCTATTTGAACTGGTTTTGATATTTAGAATGGGAGGAATAGATGGTGTTACTTACTTTGGATATCAAAATAACATTTAAACAACTTTCGACCCGTAAAGTTTGATGTTGTAAACGTCGAAGGCACAGGAAACGCTTAGCAAATCAAAGAAAATAAGACATCTAATGTAACTCTAAGACTGAAAAATAAAAGTCTGAATTCCATTACGATTCAGGAACTTGTTCTAAATGATGAATTTGAGTTCGGAATGTGTTTAAAATGGGATACAAGTGAAGTTGGAAGCAGG

mRNA sequence

ATGGATTCTAGGATCCATGATTTGGCCATTTTGTGCTTTCAGTTCATGAAAGTCCGTGCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACGGTGAGGCGTCGAGGTCGAGTATATATATACTGCTCTGCCAACCCCAAACACAAGCAACGCCAAGGCCTATCAACATTTGCAAGTGAAGCTCCATCTCCTTCCTTGTTCTCCAGAAGTGAGGTGAAGCAAGAGATTCTTCCCAGTCATAGCTCGCGAACAGGGCTAGCCTCTCTCATCCCCCAAAAGCACGAGCCAACAATGTTGTTTGGTTGGAGAATGGGTCTGGCTTCAATTCTGTGGAAGAAACAAAATTAGAGCTTAGTCGACACAAGGACTGATTTTGTGTGCCATGGCAATGCTGCTGCTACATTGATAATTATTAGTTACTCTTTGAACTTCTTTCGTGATAAAAGATGAAGCACTTCTGCTCTCAGATTTGGTCTATTTGAACTGGTTTTGATATTTAGAATGGGAGGAATAGATGGTGTTACTTACTTTGGATATCAAAATAACATTTAAACAACTTTCGACCCGTAAAGTTTGATGTTGTAAACGTCGAAGGCACAGGAAACGCTTAGCAAATCAAAGAAAATAAGACATCTAATGTAACTCTAAGACTGAAAAATAAAAGTCTGAATTCCATTACGATTCAGGAACTTGTTCTAAATGATGAATTTGAGTTCGGAATGTGTTTAAAATGGGATACAAGTGAAGTTGGAAGCAGG

Coding sequence (CDS)

ATGGATTCTAGGATCCATGATTTGGCCATTTTGTGCTTTCAGTTCATGAAAGTCCGTGCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACGGTGAGGCGTCGAGGTCGAGTATATATATACTGCTCTGCCAACCCCAAACACAAGCAACGCCAAGGCCTATCAACATTTGCAAGTGAAGCTCCATCTCCTTCCTTGTTCTCCAGAAGTGAGGTGAAGCAAGAGATTCTTCCCAGTCATAGCTCGCGAACAGGGCTAGCCTCTCTCATCCCCCAAAAGCACGAGCCAACAATGTTGTTTGGTTGGAGAATGGGTCTGGCTTCAATTCTGTGGAAGAAACAAAATTAG

Protein sequence

MDSRIHDLAILCFQFMKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN

Homology

[Close]

BLAST of CmoCh11G005430 vs. ExPASy Swiss-Prot
Match: P73300 (50S ribosomal protein L36 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.1e-11
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 16 MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG 54
          MKVRASVKKMC+ CR +RRRGRV + CSANPKHKQRQG
Sbjct: 1  MKVRASVKKMCDKCRVIRRRGRVMVICSANPKHKQRQG 38

[Close]

BLAST of CmoCh11G005430 vs. ExPASy Swiss-Prot
Match: B3WAJ5 (50S ribosomal protein L36 OS=Lactobacillus casei (strain BL23) OX=543734 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-10
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 16 MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG 54
          MKVR SVKKMCE C+ VRR+GRV I CSANPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG 38

[Close]

BLAST of CmoCh11G005430 vs. ExPASy Swiss-Prot
Match: Q035A6 (50S ribosomal protein L36 OS=Lactobacillus paracasei (strain ATCC 334 / BCRC 17002 / CIP 107868 / KCTC 3260 / NRRL B-441) OX=321967 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-10
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 16 MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG 54
          MKVR SVKKMCE C+ VRR+GRV I CSANPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG 38

[Close]

BLAST of CmoCh11G005430 vs. ExPASy Swiss-Prot
Match: Q88XW3 (50S ribosomal protein L36 OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) OX=220668 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.8e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 16 MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG 54
          MKVR SVK MCE C+ +RR+GRV I CSANPKHKQRQG
Sbjct: 1  MKVRPSVKPMCEHCKVIRRKGRVMIICSANPKHKQRQG 38

[Close]

BLAST of CmoCh11G005430 vs. ExPASy Swiss-Prot
Match: A5VLI2 (50S ribosomal protein L36 OS=Lactobacillus reuteri (strain DSM 20016) OX=557436 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.8e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 16 MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG 54
          MKVR SVKKMCE C+ V+R GRV + CSANPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKIVKRNGRVMVICSANPKHKQRQG 38

[Close]

BLAST of CmoCh11G005430 vs. ExPASy TrEMBL
Match: A0A6J1EZS5 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111440855 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.1e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 16  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 75
           MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60

Query: 76  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 116
           ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
Sbjct: 61  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 100

[Close]

BLAST of CmoCh11G005430 vs. ExPASy TrEMBL
Match: A0A6J1I4R0 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111470644 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.4e-48
Identity = 97/100 (97.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 16  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 75
           MKVRASVKKMCEFCRTVRRRGRVYIYCS+NPKHKQRQGLSTFASEAPSPSLFSRSEVK++
Sbjct: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSSNPKHKQRQGLSTFASEAPSPSLFSRSEVKEK 60

Query: 76  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 116
           ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
Sbjct: 61  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 100

[Close]

BLAST of CmoCh11G005430 vs. ExPASy TrEMBL
Match: A0A6J1JBN8 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111485318 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 7.3e-43
Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 16  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 75
           MKVRASVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLST ASE PSP LF  SEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE 60

Query: 76  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 116
           ILPSHSSRTGLASL+PQKHEPTMLFGWRMGLASIL KK N
Sbjct: 61  ILPSHSSRTGLASLLPQKHEPTMLFGWRMGLASILLKKHN 100

[Close]

BLAST of CmoCh11G005430 vs. ExPASy TrEMBL
Match: A0A6J1CT08 (Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111014487 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 9.5e-43
Identity = 88/100 (88.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 16  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 75
           MKVR+SVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLSTFASE PSP LFSRSEVKQE
Sbjct: 1   MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPPLFSRSEVKQE 60

Query: 76  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 116
           ILPS+S RTGLASLIPQKHEPT +FGWRMGLASIL KK N
Sbjct: 61  ILPSYSPRTGLASLIPQKHEPTTMFGWRMGLASILLKKHN 100

[Close]

BLAST of CmoCh11G005430 vs. ExPASy TrEMBL
Match: A0A6J1HBF8 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111461324 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.7e-42
Identity = 88/100 (88.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 16  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 75
           MKVRASVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLST ASE PSP LF  SEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQE 60

Query: 76  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 116
           ILPSHSSRTGLASL+PQKHEPTML GWRMGLASIL KK N
Sbjct: 61  ILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN 100

[Close]

BLAST of CmoCh11G005430 vs. NCBI nr
Match: XP_022933442.1 (uncharacterized protein LOC111440855 [Cucurbita moschata] >XP_023531008.1 uncharacterized protein LOC111793393 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.1 bits (518), Expect = 6.3e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 16  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 75
           MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60

Query: 76  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 116
           ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
Sbjct: 61  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 100

[Close]

BLAST of CmoCh11G005430 vs. NCBI nr
Match: KAG7021783.1 (rpmJ [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 202.6 bits (514), Expect = 1.8e-48
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 16  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 75
           MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60

Query: 76  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 116
           I PSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
Sbjct: 61  IFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 100

[Close]

BLAST of CmoCh11G005430 vs. NCBI nr
Match: XP_022971996.1 (uncharacterized protein LOC111470644 [Cucurbita maxima])

HSP 1 Score: 200.3 bits (508), Expect = 9.1e-48
Identity = 97/100 (97.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 16  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 75
           MKVRASVKKMCEFCRTVRRRGRVYIYCS+NPKHKQRQGLSTFASEAPSPSLFSRSEVK++
Sbjct: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSSNPKHKQRQGLSTFASEAPSPSLFSRSEVKEK 60

Query: 76  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 116
           ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
Sbjct: 61  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 100

[Close]

BLAST of CmoCh11G005430 vs. NCBI nr
Match: XP_038879717.1 (uncharacterized protein LOC120071478 [Benincasa hispida])

HSP 1 Score: 188.3 bits (477), Expect = 3.6e-44
Identity = 91/100 (91.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 16  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 75
           MKVRASVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLSTFASE P PSLFSRSEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPPPSLFSRSEVKQE 60

Query: 76  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 116
           +LPSHSSRTGLASLIPQKHEPTML GWRMGLASIL KK+N
Sbjct: 61  LLPSHSSRTGLASLIPQKHEPTMLLGWRMGLASILLKKRN 100

[Close]

BLAST of CmoCh11G005430 vs. NCBI nr
Match: XP_022987917.1 (uncharacterized protein LOC111485318 [Cucurbita maxima])

HSP 1 Score: 183.0 bits (463), Expect = 1.5e-42
Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 16  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 75
           MKVRASVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLST ASE PSP LF  SEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE 60

Query: 76  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 116
           ILPSHSSRTGLASL+PQKHEPTMLFGWRMGLASIL KK N
Sbjct: 61  ILPSHSSRTGLASLLPQKHEPTMLFGWRMGLASILLKKHN 100

[Close]

BLAST of CmoCh11G005430 vs. TAIR 10
Match: AT5G20180.1 (Ribosomal protein L36 )

HSP 1 Score: 121.3 bits (303), Expect = 5.0e-28
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 16  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPS-LFSRSEVKQ 75
           MKVR+SVKKMCEFC+TV+RRGRVY+ CS+NPKHKQRQG S+FA E  +PS LF+     Q
Sbjct: 1   MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGFSSFAYEGITPSPLFAEPIASQ 60

Query: 76  EI--LPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 116
           E+  LP      GLASL+ ++  PT  FGWR GLASIL+K+ N
Sbjct: 61  ELVRLPGQGVSAGLASLLHKRPMPTAYFGWRSGLASILFKQGN 103

[Close]

BLAST of CmoCh11G005430 vs. TAIR 10
Match: AT5G20180.2 (Ribosomal protein L36 )

HSP 1 Score: 121.3 bits (303), Expect = 5.0e-28
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 16  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPS-LFSRSEVKQ 75
           MKVR+SVKKMCEFC+TV+RRGRVY+ CS+NPKHKQRQG S+FA E  +PS LF+     Q
Sbjct: 1   MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGFSSFAYEGITPSPLFAEPIASQ 60

Query: 76  EI--LPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 116
           E+  LP      GLASL+ ++  PT  FGWR GLASIL+K+ N
Sbjct: 61  ELVRLPGQGVSAGLASLLHKRPMPTAYFGWRSGLASILFKQGN 103

[Close]

BLAST of CmoCh11G005430 vs. TAIR 10
Match: ATCG00760.1 (ribosomal protein L36 )

HSP 1 Score: 58.9 bits (141), Expect = 3.1e-09
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 16 MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG 54
          MK+RASV+K+CE CR +RRRGR+ + CS NP+HKQRQG
Sbjct: 1  MKIRASVRKICEKCRLIRRRGRIIVICS-NPRHKQRQG 37

The following BLAST results are available for this feature:

BLAST of CmoCh11G005430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P73300	4.1e-11	81.58	50S ribosomal protein L36 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111...	[more]
B3WAJ5	1.2e-10	81.58	50S ribosomal protein L36 OS=Lactobacillus casei (strain BL23) OX=543734 GN=rpmJ...	[more]
Q035A6	1.2e-10	81.58	50S ribosomal protein L36 OS=Lactobacillus paracasei (strain ATCC 334 / BCRC 170...	[more]
Q88XW3	7.8e-10	76.32	50S ribosomal protein L36 OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIM...	[more]
A5VLI2	7.8e-10	76.32	50S ribosomal protein L36 OS=Lactobacillus reuteri (strain DSM 20016) OX=557436 ...	[more]

BLAST of CmoCh11G005430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EZS5	3.1e-49	100.00	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111440855 PE=3 SV=1	[more]
A0A6J1I4R0	4.4e-48	97.00	Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111470644 PE=3 SV=1	[more]
A0A6J1JBN8	7.3e-43	89.00	Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111485318 PE=3 SV=1	[more]
A0A6J1CT08	9.5e-43	88.00	Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111014487 PE=3 SV=1	[more]
A0A6J1HBF8	4.7e-42	88.00	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111461324 PE=3 SV=1	[more]

BLAST of CmoCh11G005430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933442.1	6.3e-49	100.00	uncharacterized protein LOC111440855 [Cucurbita moschata] >XP_023531008.1 unchar...	[more]
KAG7021783.1	1.8e-48	99.00	rpmJ [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022971996.1	9.1e-48	97.00	uncharacterized protein LOC111470644 [Cucurbita maxima]	[more]
XP_038879717.1	3.6e-44	91.00	uncharacterized protein LOC120071478 [Benincasa hispida]	[more]
XP_022987917.1	1.5e-42	89.00	uncharacterized protein LOC111485318 [Cucurbita maxima]	[more]

BLAST of CmoCh11G005430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20180.1	5.0e-28	61.17	Ribosomal protein L36	[more]
AT5G20180.2	5.0e-28	61.17	Ribosomal protein L36	[more]
ATCG00760.1	3.1e-09	68.42	ribosomal protein L36	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000473	Ribosomal protein L36	TIGRFAM	TIGR01022	TIGR01022	coord: 16..53 e-value: 5.7E-18 score: 62.7
IPR000473	Ribosomal protein L36	PFAM	PF00444	Ribosomal_L36	coord: 16..53 e-value: 2.5E-22 score: 78.8
IPR000473	Ribosomal protein L36	PROSITE	PS00828	RIBOSOMAL_L36	coord: 26..52
IPR000473	Ribosomal protein L36	HAMAP	MF_00251	Ribosomal_L36	coord: 16..53 score: 18.701561
None	No IPR available	PANTHER	PTHR18804	FAMILY NOT NAMED	coord: 16..114
None	No IPR available	PANTHER	PTHR18804:SF16	RIBOSOMAL PROTEIN	coord: 16..114
IPR035977	Ribosomal protein L36 superfamily	SUPERFAMILY	57840	Ribosomal protein L36	coord: 16..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G005430.1	CmoCh11G005430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome