CmoCh11G005350 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G005350
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	axial regulator YABBY 5-like
Location	Cmo_Chr11: 2613770 .. 2616030 (+)
RNA-Seq Expression	CmoCh11G005350
Synteny	CmoCh11G005350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGCTCTATTTATTGTTGTACATTTCTCAAGTTTCTCACTTGGGTTTGTGCAGAATTGCAAAGAAAGCTTCTCTTCTTTTCTAGTTGTTGAGAGTTGAAACCATGTCGAGCTGCATCGATATTGCACCTGAACAGCTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTATAAACCTCTGTTCTTCCATTCATAAACAAACTTCATTTCCTGAGATGGGTTTTGCTTCTTTTTGCCTAATTTTTGTAGATCGTCGTGGAAATTGAGAAATGGGGTTTCAATTTCATGTTTGGGTTAGCTTAATGGGGGAAAAAAGATAACTTTTTTAGCCCCAAAACCCAAATCATGATTCTTGTTCAAAATTGAGGGTTAAATTTTGGATCTTTACATGAATTTAGTTGAAAATGAATGAATGTTGATGATGATGATGATGATAATGATGAGCAGGTGAGTGTTCCATGCAGTAGCTTGTTTGATATTGTGACAGTCCGTTGTGGGCACTGTACAAATCTATGGTCCGTGAATATGGCTGCTGCATTTCAGTCACTTTCCTGGCAAGATGTTCAGGTAACCCTAAAAAACCCTAAAAATCCAATCTTTCTTCTCTCGCTCTCTATTTAGGGCACAATTTTGCAACTTTTTTGAGAAAATCGAAGTGACCCAGAATCTGAAATTTTGAAATGAACAAAACCCATTATTGTAATTAAATCAACGAAATGAAAACCCTAGCTAGCTCTACAGGTATCCAGCCGCCATAAATCCTATGTTTTACTCTTTTATCCACTGAGTTTCACCATTTTCATGGTGGCCCTTTTCTTTTCTTTTCTTGAGAAGTGTTAAACTCTGAGCTGCTTTTTTTCTTTTAGCCTTGTTCGTTGGATTGTACTTTTGGGTTTAGGGTTCTTCAAGTTTTGTAAATTTTTATAGGGAAAAGAGCTTTGAGCTGCATAGCCTAGCTAGGTTTTTTTGTCATTTTCTACTGTAACAACAAAAAAAAAGGTGTTTTTTTTTATTATGTTTTTGGAGATCTGAAAGGTCCTTTTGAGCTGTTTTTGAGATTGAACTGCCAATCTGAGTATTATATGCTTTATTCAGTCATTTCAATGTTGGTATATTTCCTTTTGAGTTCTTTCATGAAACATCATTTCATAAGATCAAATGAAACTAAATGAGCTAAATTTACATATCATCACTGTTTGTTTTGTTTATAGGTTCCAAATTACAATCTTTACACTTCTAGTGGACCTGATTTTCAAGGGGATTTTGGATCTTCATCCAAATGTGATAACAATAAGATGCAAATTCGAGATTCCGCTACAATTGCAGCTGAGGAACGGGTTGTGAATCGACGTCAGTATTATTTCCTTTTCCTTTTAAACTCGCAAATCTTTAAGAAAATGAAAACTCTAGTATGATATTGTTCACTTTAAGCATAAACTCTCGTAGTTTATGCCAAAGGAGATGTATTTTTTACTTATAAGCTCATGACCATTCTCTAAATTAGCCAACGTGGGACTTACTCCCAACGATCCTGAACGGTTGCTATCTTTTTTCAGCTCCCGAGAAGCGGCAGAGAGTACCTTCTGCATACAATCAGTTCATAAAGTGAGTAACCAAAGCCTTCCCGAGTGCTTTTTCTATGTCATTTTTTTCAAAACTGTTCTAATTCAAATAGCTTTATGATGTTGTTTTAGAGAGGAAATCCGAAGGATCAAGGCCAAGAACCCTGAGATTAGTCACAGGGAAGCTTTCAGCACAGCAGCCAAAAACGTAAGTTAATTGAAAAAAATAAATTTGGGTTCATGATCTTGATGAATTTTGGTTCATAATCTTGATTTGTTGACTTGATTAGTGGGCACACTTTCCTCGTATTCACTTTGGTCTCATGTTTGAAACCAATAATCAAGTGAAGATTGATGATGTAAGTGCTTTAATCATCAAATTAAGCTCAATTTTAATGTTTTGTTGTTTCTAAACTTATGTTGAATGTTCTTGATTGGATTCAGGGTTCTGAGCGTTTGATGTCAATGGCTGCACTACTAAACAAATGAAGTGATCATCAAGTGGCTGCCTTTTTTCACCTCTAAGCTATGAACTTGTTTAATTGAAGTGACAATTATAATATCCATCTTTGGGTGCACTGTGTTGTCTAATATTGTTATCAACTGCCCAAATCAATCTATGTTCTTTCACAAACATTCCTCTTCCAAAACTTCTTCTCTAATATCAATCCAATCCATTCCGAATCGC

mRNA sequence

AAAAGCTCTATTTATTGTTGTACATTTCTCAAGTTTCTCACTTGGGTTTGTGCAGAATTGCAAAGAAAGCTTCTCTTCTTTTCTAGTTGTTGAGAGTTGAAACCATGTCGAGCTGCATCGATATTGCACCTGAACAGCTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGATATTGTGACAGTCCGTTGTGGGCACTGTACAAATCTATGGTCCGTGAATATGGCTGCTGCATTTCAGTCACTTTCCTGGCAAGATGTTCAGGTTCCAAATTACAATCTTTACACTTCTAGTGGACCTGATTTTCAAGGGGATTTTGGATCTTCATCCAAATGTGATAACAATAAGATGCAAATTCGAGATTCCGCTACAATTGCAGCTGAGGAACGGGTTGTGAATCGACCTCCCGAGAAGCGGCAGAGAGTACCTTCTGCATACAATCAGTTCATAAAAGAGGAAATCCGAAGGATCAAGGCCAAGAACCCTGAGATTAGTCACAGGGAAGCTTTCAGCACAGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTCATGTTTGAAACCAATAATCAAGTGAAGATTGATGATGGTTCTGAGCGTTTGATGTCAATGGCTGCACTACTAAACAAATGAAGTGATCATCAAGTGGCTGCCTTTTTTCACCTCTAAGCTATGAACTTGTTTAATTGAAGTGACAATTATAATATCCATCTTTGGGTGCACTGTGTTGTCTAATATTGTTATCAACTGCCCAAATCAATCTATGTTCTTTCACAAACATTCCTCTTCCAAAACTTCTTCTCTAATATCAATCCAATCCATTCCGAATCGC

Coding sequence (CDS)

ATGTCGAGCTGCATCGATATTGCACCTGAACAGCTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGATATTGTGACAGTCCGTTGTGGGCACTGTACAAATCTATGGTCCGTGAATATGGCTGCTGCATTTCAGTCACTTTCCTGGCAAGATGTTCAGGTTCCAAATTACAATCTTTACACTTCTAGTGGACCTGATTTTCAAGGGGATTTTGGATCTTCATCCAAATGTGATAACAATAAGATGCAAATTCGAGATTCCGCTACAATTGCAGCTGAGGAACGGGTTGTGAATCGACCTCCCGAGAAGCGGCAGAGAGTACCTTCTGCATACAATCAGTTCATAAAAGAGGAAATCCGAAGGATCAAGGCCAAGAACCCTGAGATTAGTCACAGGGAAGCTTTCAGCACAGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTCATGTTTGAAACCAATAATCAAGTGAAGATTGATGATGGTTCTGAGCGTTTGATGTCAATGGCTGCACTACTAAACAAATGA

Protein sequence

MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQVPNYNLYTSSGPDFQGDFGSSSKCDNNKMQIRDSATIAAEERVVNRPPEKRQRVPSAYNQFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQVKIDDGSERLMSMAALLNK

Homology

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BLAST of CmoCh11G005350 vs. ExPASy Swiss-Prot
Match: Q8GW46 (Axial regulator YABBY 5 OS=Arabidopsis thaliana OX=3702 GN=YAB5 PE=1 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 5.5e-61
Identity = 119/168 (70.83%), Postives = 134/168 (79.76%), Query Frame = 0


Query: 7   IAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQV 66
           +A EQLCYIPCNFCNI+LAV+VPCSSLFDIVTVRCGHCTNLWSVNMAAA QSLS  + Q 
Sbjct: 6   MATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNFQA 65

Query: 67  PNYNLYTSSGPDFQGDFGSSSKCDNNKMQIRDSATIAAEERVVNRPPEKRQRVPSAYNQF 126
            NY +          ++GSSS+  + K+  R S     E+R+VNRPPEKRQRVPSAYNQF
Sbjct: 66  TNYAV---------PEYGSSSR-SHTKIPSRISTRTITEQRIVNRPPEKRQRVPSAYNQF 125

Query: 127 IKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQVKI 175
           IKEEI+RIKA NP+ISHREAFSTAAKNWAHFP IHFGLM E+N Q KI
Sbjct: 126 IKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNKQAKI 163

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BLAST of CmoCh11G005350 vs. ExPASy Swiss-Prot
Match: Q10FZ7 (Protein YABBY 2 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB2 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 7.3e-45
Identity = 95/164 (57.93%), Postives = 116/164 (70.73%), Query Frame = 0


Query: 1   MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS 60
           MS+ I  APE +CY+ CNFCN + AVSVP +S+ +IVTVRCGHCT+L SVN+    Q+L 
Sbjct: 1   MSAQIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALP 60

Query: 61  WQDVQVPNYNLYTSSGPDFQGDFGSSSKCDNNKMQIRDSATIAAEERVVNRPPEKRQRVP 120
            +D    N  ++  S  +   ++GSSS+     M    + T   E  +  RPPEKRQRVP
Sbjct: 61  AEDHLQDNLKMHNMSFRENYSEYGSSSRYGRVPMMFSKNDT---EHMLHVRPPEKRQRVP 120

Query: 121 SAYNQFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGL 165
           SAYN+FIKEEIRRIKA NP+ISHREAFSTAAKNWAHFP IHFGL
Sbjct: 121 SAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL 161

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BLAST of CmoCh11G005350 vs. ExPASy Swiss-Prot
Match: Q9XFB0 (Putative axial regulator YABBY 2 OS=Arabidopsis thaliana OX=3702 GN=YAB2 PE=1 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.9e-41
Identity = 97/178 (54.49%), Postives = 120/178 (67.42%), Query Frame = 0


Query: 5   IDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS---- 64
           +D + E++CY+ C+FC  +LAVSVP +SLF +VTVRCGHCTNL S+N+  +    S    
Sbjct: 3   VDFSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPI 62

Query: 65  WQDVQVPNYNLYTSSGPDFQGDFGSSSKCDNNKMQIRDSATIAAEERVVNRPPEKRQRVP 124
            QD+Q P+    TS     + D  SSS+  NN   + ++    A      RPPEKRQRVP
Sbjct: 63  HQDLQ-PHRQHTTSLVT--RKDCASSSRSTNN---LSENIDREAPRMPPIRPPEKRQRVP 122

Query: 125 SAYNQFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQVKIDDGS 179
           SAYN+FIKEEI+RIKA NPEISHREAFSTAAKNWAHFP IHFGL  + N + K  D S
Sbjct: 123 SAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLDGNKKGKQLDQS 174

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BLAST of CmoCh11G005350 vs. ExPASy Swiss-Prot
Match: Q2QM17 (Protein YABBY 6 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB6 PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.4e-40
Identity = 96/173 (55.49%), Postives = 118/173 (68.21%), Query Frame = 0


Query: 7   IAP-EQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSL-SWQDV 66
           IAP EQ+CY+ CNFCN +LAVSVP +S+ +IVTVRCGHCTNL SVN+     S  + QD 
Sbjct: 5   IAPAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDH 64

Query: 67  QVPNYNLYTSSG--PDFQG--DFGSSSKCDNNKMQIRDSATIAA---------EERVVNR 126
              +      SG   D  G  +FG S+   ++K+++  +A             E+ +  R
Sbjct: 65  HHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQALHAR 124

Query: 127 PPEKRQRVPSAYNQFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGL 165
           PPEKRQRVPSAYN+FIKEEIRRIKA NP+ISHREAFSTAAKNWAH+P IHFGL
Sbjct: 125 PPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 177

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BLAST of CmoCh11G005350 vs. ExPASy Swiss-Prot
Match: A2X7Q3 (Protein YABBY 4 OS=Oryza sativa subsp. indica OX=39946 GN=YAB4 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.7e-38
Identity = 100/217 (46.08%), Postives = 121/217 (55.76%), Query Frame = 0


Query: 10  EQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNM----------------- 69
           EQLCY+ CN C+ +LAV VPCSSLF  VTVRCGHC NL SVN+                 
Sbjct: 23  EQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLH 82

Query: 70  ----------------AAAFQSLSWQDVQVPNYNLYTSSGPDFQGDFGSSSKCDNN--KM 129
                             AFQ+ S    Q  + +L + +G        SSS C +N   M
Sbjct: 83  FGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITG-------RSSSSCASNAPAM 142

Query: 130 QIRDSATIAAEERV-------VNRPPEKRQRVPSAYNQFIKEEIRRIKAKNPEISHREAF 183
           Q+  +  +  E  +        NRPPEKRQRVPSAYN+FIK+EI+RIKA NP+ISHREAF
Sbjct: 143 QMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAF 202

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BLAST of CmoCh11G005350 vs. ExPASy TrEMBL
Match: A0A6J1F4T3 (axial regulator YABBY 5-like OS=Cucurbita moschata OX=3662 GN=LOC111440865 PE=3 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.4e-104
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS 60
           MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS
Sbjct: 1   MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS 60

Query: 61  WQDVQVPNYNLYTSSGPDFQGDFGSSSKCDNNKMQIRDSATIAAEERVVNRPPEKRQRVP 120
           WQDVQVPNYNLYTSSGPDFQGDFGSSSKCDNNKMQIRDSATIAAEERVVNRPPEKRQRVP
Sbjct: 61  WQDVQVPNYNLYTSSGPDFQGDFGSSSKCDNNKMQIRDSATIAAEERVVNRPPEKRQRVP 120

Query: 121 SAYNQFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQVKIDDGSER 180
           SAYNQFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQVKIDDGSER
Sbjct: 121 SAYNQFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQVKIDDGSER 180

Query: 181 LMSMAALLNK 191
           LMSMAALLNK
Sbjct: 181 LMSMAALLNK 190

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BLAST of CmoCh11G005350 vs. ExPASy TrEMBL
Match: A0A6J1KTI6 (axial regulator YABBY 5-like OS=Cucurbita maxima OX=3661 GN=LOC111497478 PE=3 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 8.8e-102
Identity = 187/191 (97.91%), Postives = 188/191 (98.43%), Query Frame = 0


Query: 1   MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS 60
           MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS
Sbjct: 1   MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS 60

Query: 61  WQDVQVPNYNLYTSSGPDFQGDFGSSSKCD-NNKMQIRDSATIAAEERVVNRPPEKRQRV 120
           WQDVQVPNYNLYTSSGPDFQGDFGSSSKCD NNKMQIRDS TIAAEERVVNRPPEKRQRV
Sbjct: 61  WQDVQVPNYNLYTSSGPDFQGDFGSSSKCDNNNKMQIRDSTTIAAEERVVNRPPEKRQRV 120

Query: 121 PSAYNQFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQVKIDDGSE 180
           PSAYNQFIKEEI+RIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQ KIDDGSE
Sbjct: 121 PSAYNQFIKEEIQRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQAKIDDGSE 180

Query: 181 RLMSMAALLNK 191
           RLMSMAALLNK
Sbjct: 181 RLMSMAALLNK 191

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BLAST of CmoCh11G005350 vs. ExPASy TrEMBL
Match: A0A6J1CSS6 (axial regulator YABBY 5-like OS=Momordica charantia OX=3673 GN=LOC111014425 PE=3 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 2.4e-91
Identity = 171/191 (89.53%), Postives = 178/191 (93.19%), Query Frame = 0


Query: 1   MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS 60
           M+SCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS
Sbjct: 1   MASCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS 60

Query: 61  WQDVQVPNYNLYTSSGPDFQGDFGSSSKCDNNKMQIRDSATIAAEERVVNRPPEKRQRVP 120
           WQDVQVPNYNLY+ SGPDFQGDFGSSSKC+NNKM+IR   TI AEERVVNRPPEKRQRVP
Sbjct: 61  WQDVQVPNYNLYSCSGPDFQGDFGSSSKCNNNKMEIRAPTTIPAEERVVNRPPEKRQRVP 120

Query: 121 SAYNQFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFET-NNQVKIDDGSE 180
           SAYNQFIKEEI+RIKA NPEISHREAFSTAAKNWAHFPRIHFGLM ET NNQVK+DDG  
Sbjct: 121 SAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNNQVKLDDG-- 180

Query: 181 RLMSMAALLNK 191
             +S AALLNK
Sbjct: 181 --LSRAALLNK 187

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BLAST of CmoCh11G005350 vs. ExPASy TrEMBL
Match: D7TC40 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0016g05590 PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.2e-79
Identity = 154/191 (80.63%), Postives = 167/191 (87.43%), Query Frame = 0


Query: 1   MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS 60
           MSSCID+A EQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS
Sbjct: 1   MSSCIDVASEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS 60

Query: 61  WQDVQVPNYNLYTSSGPDFQGDFGSSSKCDNNKMQIRDSATIAAEERVVNRPPEKRQRVP 120
           WQDVQ PNY     + PD++ D GSSSKC N KM +R  A+  +EER+VNRPPEKRQRVP
Sbjct: 61  WQDVQAPNY-----TSPDYRIDLGSSSKC-NTKMAMRAPASNISEERIVNRPPEKRQRVP 120

Query: 121 SAYNQFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQVKIDDGSER 180
           SAYNQFIKEEI+RIKA NP+ISHREAFSTAAKNWAHFP IHFGLM ETNNQ K+D+GSE+
Sbjct: 121 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLETNNQPKLDEGSEK 180

Query: 181 -LMSMAALLNK 191
            LMS AAL NK
Sbjct: 181 HLMSKAALRNK 185

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BLAST of CmoCh11G005350 vs. ExPASy TrEMBL
Match: A0A1R3IF60 (YABBY protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_12585 PE=3 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.7e-79
Identity = 153/191 (80.10%), Postives = 165/191 (86.39%), Query Frame = 0


Query: 1   MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS 60
           MSSC+D+A EQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSL+
Sbjct: 1   MSSCVDVAAEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLA 60

Query: 61  WQDVQVPNYNLYTSSGPDFQGDFGSSSKCDNNKMQIRDSATIAAEERVVNRPPEKRQRVP 120
           WQD+Q PN   Y +   +++ D GSSSKC NNK  IR  AT A EERVVNRPPEKRQRVP
Sbjct: 61  WQDIQAPN---YAAQDHNYRMDLGSSSKC-NNKFSIRPPATNATEERVVNRPPEKRQRVP 120

Query: 121 SAYNQFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQVKIDDGSER 180
           SAYNQFIKEEI+RIKA NP+ISHREAFSTAAKNWAHFP IHFGLM ETNNQ K+DD SE+
Sbjct: 121 SAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLETNNQNKLDDASEK 180

Query: 181 -LMSMAALLNK 191
            LMS  ALLNK
Sbjct: 181 HLMSRTALLNK 187

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BLAST of CmoCh11G005350 vs. NCBI nr
Match: XP_022933458.1 (axial regulator YABBY 5-like [Cucurbita moschata] >XP_023529551.1 axial regulator YABBY 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 388.7 bits (997), Expect = 3.0e-104
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS 60
           MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS
Sbjct: 1   MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS 60

Query: 61  WQDVQVPNYNLYTSSGPDFQGDFGSSSKCDNNKMQIRDSATIAAEERVVNRPPEKRQRVP 120
           WQDVQVPNYNLYTSSGPDFQGDFGSSSKCDNNKMQIRDSATIAAEERVVNRPPEKRQRVP
Sbjct: 61  WQDVQVPNYNLYTSSGPDFQGDFGSSSKCDNNKMQIRDSATIAAEERVVNRPPEKRQRVP 120

Query: 121 SAYNQFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQVKIDDGSER 180
           SAYNQFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQVKIDDGSER
Sbjct: 121 SAYNQFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQVKIDDGSER 180

Query: 181 LMSMAALLNK 191
           LMSMAALLNK
Sbjct: 181 LMSMAALLNK 190

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BLAST of CmoCh11G005350 vs. NCBI nr
Match: KAG6587892.1 (Axial regulator YABBY 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 386.7 bits (992), Expect = 1.1e-103
Identity = 189/190 (99.47%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 1   MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS 60
           MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS
Sbjct: 1   MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS 60

Query: 61  WQDVQVPNYNLYTSSGPDFQGDFGSSSKCDNNKMQIRDSATIAAEERVVNRPPEKRQRVP 120
           WQDVQVPNYNLYTS GPDFQGDFGSSSKCDNNKMQIRDSATIAAEERVVNRPPEKRQRVP
Sbjct: 61  WQDVQVPNYNLYTSCGPDFQGDFGSSSKCDNNKMQIRDSATIAAEERVVNRPPEKRQRVP 120

Query: 121 SAYNQFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQVKIDDGSER 180
           SAYNQFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQVKIDDGSER
Sbjct: 121 SAYNQFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQVKIDDGSER 180

Query: 181 LMSMAALLNK 191
           LMSMAALLNK
Sbjct: 181 LMSMAALLNK 190

[Close]

BLAST of CmoCh11G005350 vs. NCBI nr
Match: XP_023004055.1 (axial regulator YABBY 5-like [Cucurbita maxima])

HSP 1 Score: 379.4 bits (973), Expect = 1.8e-101
Identity = 187/191 (97.91%), Postives = 188/191 (98.43%), Query Frame = 0


Query: 1   MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS 60
           MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS
Sbjct: 1   MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS 60

Query: 61  WQDVQVPNYNLYTSSGPDFQGDFGSSSKCD-NNKMQIRDSATIAAEERVVNRPPEKRQRV 120
           WQDVQVPNYNLYTSSGPDFQGDFGSSSKCD NNKMQIRDS TIAAEERVVNRPPEKRQRV
Sbjct: 61  WQDVQVPNYNLYTSSGPDFQGDFGSSSKCDNNNKMQIRDSTTIAAEERVVNRPPEKRQRV 120

Query: 121 PSAYNQFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQVKIDDGSE 180
           PSAYNQFIKEEI+RIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQ KIDDGSE
Sbjct: 121 PSAYNQFIKEEIQRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQAKIDDGSE 180

Query: 181 RLMSMAALLNK 191
           RLMSMAALLNK
Sbjct: 181 RLMSMAALLNK 191

[Close]

BLAST of CmoCh11G005350 vs. NCBI nr
Match: XP_022144840.1 (axial regulator YABBY 5-like [Momordica charantia])

HSP 1 Score: 344.7 bits (883), Expect = 4.9e-91
Identity = 171/191 (89.53%), Postives = 178/191 (93.19%), Query Frame = 0


Query: 1   MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS 60
           M+SCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS
Sbjct: 1   MASCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS 60

Query: 61  WQDVQVPNYNLYTSSGPDFQGDFGSSSKCDNNKMQIRDSATIAAEERVVNRPPEKRQRVP 120
           WQDVQVPNYNLY+ SGPDFQGDFGSSSKC+NNKM+IR   TI AEERVVNRPPEKRQRVP
Sbjct: 61  WQDVQVPNYNLYSCSGPDFQGDFGSSSKCNNNKMEIRAPTTIPAEERVVNRPPEKRQRVP 120

Query: 121 SAYNQFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFET-NNQVKIDDGSE 180
           SAYNQFIKEEI+RIKA NPEISHREAFSTAAKNWAHFPRIHFGLM ET NNQVK+DDG  
Sbjct: 121 SAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNNQVKLDDG-- 180

Query: 181 RLMSMAALLNK 191
             +S AALLNK
Sbjct: 181 --LSRAALLNK 187

[Close]

BLAST of CmoCh11G005350 vs. NCBI nr
Match: XP_004150030.1 (axial regulator YABBY 5-like [Cucumis sativus] >KAE8653111.1 hypothetical protein Csa_019794 [Cucumis sativus])

HSP 1 Score: 343.2 bits (879), Expect = 1.4e-90
Identity = 168/191 (87.96%), Postives = 177/191 (92.67%), Query Frame = 0


Query: 2   SSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSW 61
           ++C+DIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAF SLSW
Sbjct: 3   TTCLDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFHSLSW 62

Query: 62  QDVQVPNYNLYTSSGPDFQGDFGSSSKCDN--NKMQIRDSATIAAEERVVNRPPEKRQRV 121
           QDVQVP+YNLY  +G DFQGDFGSSSKC+N  NKM+IR   TI AEERVVNRPPEKRQRV
Sbjct: 63  QDVQVPSYNLYGCNGADFQGDFGSSSKCNNNVNKMEIRVPTTIPAEERVVNRPPEKRQRV 122

Query: 122 PSAYNQFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQVKIDDGSE 181
           PSAYNQFIKEEI+RIKA NPEISHREAFSTAAKNWAHFPRIHFGLM ETNNQVK+DDGSE
Sbjct: 123 PSAYNQFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDGSE 182

Query: 182 RLMSMAALLNK 191
           RLM  AALLNK
Sbjct: 183 RLMPRAALLNK 193

[Close]

BLAST of CmoCh11G005350 vs. TAIR 10
Match: AT2G26580.1 (plant-specific transcription factor YABBY family protein )

HSP 1 Score: 235.3 bits (599), Expect = 3.9e-62
Identity = 119/168 (70.83%), Postives = 134/168 (79.76%), Query Frame = 0


Query: 7   IAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQV 66
           +A EQLCYIPCNFCNI+LAV+VPCSSLFDIVTVRCGHCTNLWSVNMAAA QSLS  + Q 
Sbjct: 6   MATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNFQA 65

Query: 67  PNYNLYTSSGPDFQGDFGSSSKCDNNKMQIRDSATIAAEERVVNRPPEKRQRVPSAYNQF 126
            NY +          ++GSSS+  + K+  R S     E+R+VNRPPEKRQRVPSAYNQF
Sbjct: 66  TNYAV---------PEYGSSSR-SHTKIPSRISTRTITEQRIVNRPPEKRQRVPSAYNQF 125

Query: 127 IKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQVKI 175
           IKEEI+RIKA NP+ISHREAFSTAAKNWAHFP IHFGLM E+N Q KI
Sbjct: 126 IKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNKQAKI 163

[Close]

BLAST of CmoCh11G005350 vs. TAIR 10
Match: AT2G26580.2 (plant-specific transcription factor YABBY family protein )

HSP 1 Score: 235.3 bits (599), Expect = 3.9e-62
Identity = 119/168 (70.83%), Postives = 134/168 (79.76%), Query Frame = 0


Query: 7   IAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQV 66
           +A EQLCYIPCNFCNI+LAV+VPCSSLFDIVTVRCGHCTNLWSVNMAAA QSLS  + Q 
Sbjct: 6   MATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNFQA 65

Query: 67  PNYNLYTSSGPDFQGDFGSSSKCDNNKMQIRDSATIAAEERVVNRPPEKRQRVPSAYNQF 126
            NY +          ++GSSS+  + K+  R S     E+R+VNRPPEKRQRVPSAYNQF
Sbjct: 66  TNYAV---------PEYGSSSR-SHTKIPSRISTRTITEQRIVNRPPEKRQRVPSAYNQF 125

Query: 127 IKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQVKI 175
           IKEEI+RIKA NP+ISHREAFSTAAKNWAHFP IHFGLM E+N Q KI
Sbjct: 126 IKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNKQAKI 163

[Close]

BLAST of CmoCh11G005350 vs. TAIR 10
Match: AT1G08465.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 169.9 bits (429), Expect = 2.0e-42
Identity = 97/178 (54.49%), Postives = 120/178 (67.42%), Query Frame = 0


Query: 5   IDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLS---- 64
           +D + E++CY+ C+FC  +LAVSVP +SLF +VTVRCGHCTNL S+N+  +    S    
Sbjct: 3   VDFSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPI 62

Query: 65  WQDVQVPNYNLYTSSGPDFQGDFGSSSKCDNNKMQIRDSATIAAEERVVNRPPEKRQRVP 124
            QD+Q P+    TS     + D  SSS+  NN   + ++    A      RPPEKRQRVP
Sbjct: 63  HQDLQ-PHRQHTTSLVT--RKDCASSSRSTNN---LSENIDREAPRMPPIRPPEKRQRVP 122

Query: 125 SAYNQFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLMFETNNQVKIDDGS 179
           SAYN+FIKEEI+RIKA NPEISHREAFSTAAKNWAHFP IHFGL  + N + K  D S
Sbjct: 123 SAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLDGNKKGKQLDQS 174

[Close]

BLAST of CmoCh11G005350 vs. TAIR 10
Match: AT2G45190.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 148.7 bits (374), Expect = 4.8e-36
Identity = 86/171 (50.29%), Postives = 107/171 (62.57%), Query Frame = 0


Query: 10  EQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQ-DVQVPN 69
           + LCY+ CNFC  +LAV+VP +SLF  VTVRCG CTNL SVNM +     S Q  +Q+  
Sbjct: 23  DHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLPASNQLQLQLGP 82

Query: 70  YNLYTSSGPDFQGDFGSSSKCDNNKMQIRDSATI--------------AAEERVVNRPPE 129
           ++ +    P    +    +  + N M +    T+                +   VNRPPE
Sbjct: 83  HSYF---NPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHEIPKAPPVNRPPE 142

Query: 130 KRQRVPSAYNQFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFGLM 166
           KRQRVPSAYN+FIKEEI+RIKA NP+ISHREAFS AAKNWAHFP IHFGL+
Sbjct: 143 KRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLV 190

[Close]

BLAST of CmoCh11G005350 vs. TAIR 10
Match: AT4G00180.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 147.1 bits (370), Expect = 1.4e-35
Identity = 87/182 (47.80%), Postives = 106/182 (58.24%), Query Frame = 0


Query: 10  EQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQVPNY 69
           +QLCY+ C+FC+ VLAVSVP SSLF  VTVRCGHC+NL SV +  + ++L    V    +
Sbjct: 23  DQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTV--SMRALLLPSVSNLGH 82

Query: 70  NLYTSSGPD-----FQGDFGSSSKCDNNKMQIRDSATIAAEERVV--------------- 129
           +      P       +         + N M    ++     E +V               
Sbjct: 83  SFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEM 142

Query: 130 ------NRPPEKRQRVPSAYNQFIKEEIRRIKAKNPEISHREAFSTAAKNWAHFPRIHFG 166
                 NRPPEKRQRVPSAYN+FIKEEI+RIKA NP+ISHREAFS AAKNWAHFP IHFG
Sbjct: 143 PRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFG 202

The following BLAST results are available for this feature:

BLAST of CmoCh11G005350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW46	5.5e-61	70.83	Axial regulator YABBY 5 OS=Arabidopsis thaliana OX=3702 GN=YAB5 PE=1 SV=1	[more]
Q10FZ7	7.3e-45	57.93	Protein YABBY 2 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB2 PE=2 SV=1	[more]
Q9XFB0	2.9e-41	54.49	Putative axial regulator YABBY 2 OS=Arabidopsis thaliana OX=3702 GN=YAB2 PE=1 SV...	[more]
Q2QM17	2.4e-40	55.49	Protein YABBY 6 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB6 PE=2 SV=1	[more]
A2X7Q3	1.7e-38	46.08	Protein YABBY 4 OS=Oryza sativa subsp. indica OX=39946 GN=YAB4 PE=3 SV=1	[more]

BLAST of CmoCh11G005350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F4T3	1.4e-104	100.00	axial regulator YABBY 5-like OS=Cucurbita moschata OX=3662 GN=LOC111440865 PE=3 ...	[more]
A0A6J1KTI6	8.8e-102	97.91	axial regulator YABBY 5-like OS=Cucurbita maxima OX=3661 GN=LOC111497478 PE=3 SV...	[more]
A0A6J1CSS6	2.4e-91	89.53	axial regulator YABBY 5-like OS=Momordica charantia OX=3673 GN=LOC111014425 PE=3...	[more]
D7TC40	1.2e-79	80.63	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0016g05590 PE=3 SV=...	[more]
A0A1R3IF60	2.7e-79	80.10	YABBY protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_12585 PE=3 SV=1	[more]

BLAST of CmoCh11G005350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933458.1	3.0e-104	100.00	axial regulator YABBY 5-like [Cucurbita moschata] >XP_023529551.1 axial regulato...	[more]
KAG6587892.1	1.1e-103	99.47	Axial regulator YABBY 5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023004055.1	1.8e-101	97.91	axial regulator YABBY 5-like [Cucurbita maxima]	[more]
XP_022144840.1	4.9e-91	89.53	axial regulator YABBY 5-like [Momordica charantia]	[more]
XP_004150030.1	1.4e-90	87.96	axial regulator YABBY 5-like [Cucumis sativus] >KAE8653111.1 hypothetical protei...	[more]

BLAST of CmoCh11G005350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26580.1	3.9e-62	70.83	plant-specific transcription factor YABBY family protein	[more]
AT2G26580.2	3.9e-62	70.83	plant-specific transcription factor YABBY family protein	[more]
AT1G08465.1	2.0e-42	54.49	Plant-specific transcription factor YABBY family protein	[more]
AT2G45190.1	4.8e-36	50.29	Plant-specific transcription factor YABBY family protein	[more]
AT4G00180.1	1.4e-35	47.80	Plant-specific transcription factor YABBY family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006780	YABBY protein	PFAM	PF04690	YABBY	coord: 9..164 e-value: 1.2E-69 score: 234.1
IPR006780	YABBY protein	PANTHER	PTHR31675	PROTEIN YABBY 6-RELATED	coord: 1..181
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 100..159 e-value: 1.4E-6 score: 30.4
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 107..157
None	No IPR available	PANTHER	PTHR31675:SF6	AXIAL REGULATOR YABBY 5	coord: 1..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G005350.1	CmoCh11G005350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010158	abaxial cell fate specification
biological_process	GO:0009944	polarity specification of adaxial/abaxial axis
biological_process	GO:2000024	regulation of leaf development
biological_process	GO:1902183	regulation of shoot apical meristem development
biological_process	GO:0007275	multicellular organism development
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000976	transcription cis-regulatory region binding