CmoCh11G005280 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G005280
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Auxin-responsive protein
Location	Cmo_Chr11: 2579972 .. 2581486 (+)
RNA-Seq Expression	CmoCh11G005280
Synteny	CmoCh11G005280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAACAACCCCACACTTGCTCTTCAATCCCATCCATTTTTTTTTAATATTCATCCAATCTTTGTTCTTTTCCTGTTCGGATTTTCTTCCCCCTATCCCTATGGAGCTTCAATTAGGCCTCTCTCTAATCCCCGCTAAGCCCTTCGACCTTAACAACTCCCTTCTCCTTCACGACACCGCCTCTTGTCTCGATTTGAACTCCACCATTCGCAAGAAGCGCCCTCTCCATGTCGACCCCTCTTTGGCATTTCGTCGAACACTTCCTCTGCTTCTCTGGAACGACCATCCCAATAATGGCGATGACGATGACAACGATCCCCATTCCGCCTCGAATGATTCGTACGCTCACTTTCCTCTTTTACATTTCGGATTTTGGTTGATTTCTTGAGGCTGAATTTCTTTGGTTTACTTGACAGAGACGAGGAGGAAGAGGAAGAGGATAATAGGCTTGTGGGGTGGCCGCCGCTTAAGAAGAGGAAGACGAGGTCTTTGATGCAGAAGCGCAGAGGTCGGGGACGGCCGGCGGTGAATGGCGGCGGGTTGAATTGGAATTCGAATTCGAGGTACGTGAAGGTGAAGATGGAGGGAGTTGGGATTGGTAGGAAGGTTGATTTAAGCCAATACCATTGTTTTGACGAACTTAGAGCCACTTTGATGAAGATGTTTGGTAAGATTGTTTTCTTATTCCTATTCAGAATAGTGAATTCCGGATGGGTGTAAGTTCGTGTACTGATTTTGGGTTATTTGGAAACAGACGAGATGGACCCCGACGGTCAAAGACTCACTTACCAGGATATCGACGGTGACTGGTTACTTGCCGACGACGTAACTTGGAGGTAAAGCTAAATATTCAAAGAAATAACCAATATAAAAAAATAATTTAAATTTATGGGAAAATGAAAAGATGTCCAATAAATTTATGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTTTTTTTTTTTTTTTTTTTTTTGTTATTTTGACAGGAATTTCATCGGAACCGTACAACGGATCAAATTGGAGAAGAACCGTGGCTGAATGAGGGGTTACCGGCGTCGGCGGTAGGAGAATCAGATGCCATCTAACTAAAAAATACATTTTTTTCCCTTTTTTCTTCTTTAGCCCTTGAAGTTTTAATGACTGTACGTATTATAATATATGGATAAAACTTCAGCTACGACTCGGTAACTTTTTTTTTAACCTGGTTAACTTTAGGGTTTTTAACCTGTGAAGACAATTCGATGAAACAAAAGTAATTTTAAGGTTTGGATGTATATATTATTTGATTACTACAGCACTTGGG

mRNA sequence

CCAACAACCCCACACTTGCTCTTCAATCCCATCCATTTTTTTTTAATATTCATCCAATCTTTGTTCTTTTCCTGTTCGGATTTTCTTCCCCCTATCCCTATGGAGCTTCAATTAGGCCTCTCTCTAATCCCCGCTAAGCCCTTCGACCTTAACAACTCCCTTCTCCTTCACGACACCGCCTCTTGTCTCGATTTGAACTCCACCATTCGCAAGAAGCGCCCTCTCCATGTCGACCCCTCTTTGGCATTTCGTCGAACACTTCCTCTGCTTCTCTGGAACGACCATCCCAATAATGGCGATGACGATGACAACGATCCCCATTCCGCCTCGAATGATTCAGACGAGGAGGAAGAGGAAGAGGATAATAGGCTTGTGGGGTGGCCGCCGCTTAAGAAGAGGAAGACGAGGTCTTTGATGCAGAAGCGCAGAGGTCGGGGACGGCCGGCGGTGAATGGCGGCGGGTTGAATTGGAATTCGAATTCGAGGTACGTGAAGGTGAAGATGGAGGGAGTTGGGATTGGTAGGAAGGTTGATTTAAGCCAATACCATTGTTTTGACGAACTTAGAGCCACTTTGATGAAGATGTTTGACGAGATGGACCCCGACGGTCAAAGACTCACTTACCAGGATATCGACGGTGACTGGTTACTTGCCGACGACGTAACTTGGAGGAATTTCATCGGAACCGTACAACGGATCAAATTGGAGAAGAACCGTGGCTGAATGAGGGGTTACCGGCGTCGGCGGTAGGAGAATCAGATGCCATCTAACTAAAAAATACATTTTTTTCCCTTTTTTCTTCTTTAGCCCTTGAAGTTTTAATGACTGTACGTATTATAATATATGGATAAAACTTCAGCTACGACTCGGTAACTTTTTTTTTAACCTGGTTAACTTTAGGGTTTTTAACCTGTGAAGACAATTCGATGAAACAAAAGTAATTTTAAGGTTTGGATGTATATATTATTTGATTACTACAGCACTTGGG

Coding sequence (CDS)

ATGGAGCTTCAATTAGGCCTCTCTCTAATCCCCGCTAAGCCCTTCGACCTTAACAACTCCCTTCTCCTTCACGACACCGCCTCTTGTCTCGATTTGAACTCCACCATTCGCAAGAAGCGCCCTCTCCATGTCGACCCCTCTTTGGCATTTCGTCGAACACTTCCTCTGCTTCTCTGGAACGACCATCCCAATAATGGCGATGACGATGACAACGATCCCCATTCCGCCTCGAATGATTCAGACGAGGAGGAAGAGGAAGAGGATAATAGGCTTGTGGGGTGGCCGCCGCTTAAGAAGAGGAAGACGAGGTCTTTGATGCAGAAGCGCAGAGGTCGGGGACGGCCGGCGGTGAATGGCGGCGGGTTGAATTGGAATTCGAATTCGAGGTACGTGAAGGTGAAGATGGAGGGAGTTGGGATTGGTAGGAAGGTTGATTTAAGCCAATACCATTGTTTTGACGAACTTAGAGCCACTTTGATGAAGATGTTTGACGAGATGGACCCCGACGGTCAAAGACTCACTTACCAGGATATCGACGGTGACTGGTTACTTGCCGACGACGTAACTTGGAGGAATTTCATCGGAACCGTACAACGGATCAAATTGGAGAAGAACCGTGGCTGA

Protein sequence

MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWNDHPNNGDDDDNDPHSASNDSDEEEEEEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGGGLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFDEMDPDGQRLTYQDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG

Homology

[Close]

BLAST of CmoCh11G005280 vs. ExPASy Swiss-Prot
Match: Q93WC4 (Auxin-responsive protein IAA29 OS=Arabidopsis thaliana OX=3702 GN=IAA29 PE=1 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-17
Identity = 77/245 (31.43%), Postives = 108/245 (44.08%), Query Frame = 0


Query: 1   MELQLGLSLIPAKP------FDLNNSLLLHDTASCLDLNS-TIRKKRPLHVDPSLAFRRT 60
           MEL LGLSL P K       FDLN    +   ASCL            L       +   
Sbjct: 1   MELDLGLSLSPHKSSKLGFNFDLNKHCAIEGAASCLGTEKLRFEATFGLGNVEENCYMPK 60

Query: 61  LPLLLWNDHPNNGDDDDNDPHSASNDSDEEEEEEDNRLVGWPPLKK-------------R 120
             L   N  PN   ++D DP  + +    ++EEE++ +VGWPP+K              R
Sbjct: 61  QRLFALNGQPN---EEDEDPLESESSIVYDDEEENSEVVGWPPVKTCMIKYGSYHHRHIR 120

Query: 121 KTRSLMQKRRGRGRPAVNGGGLN--------------WNSNSRYVKVKMEGVGIGRKVDL 180
                    RGR   A+N    N               + +S YVKVKM+GV I RKVD+
Sbjct: 121 NHHHCPYHHRGRRITAMNNNISNPTTATVGSSSSSSISSRSSMYVKVKMDGVAIARKVDI 180

Query: 181 SQYHCFDELRATLMKMFDE-----MDPDGQRLTYQDIDGDWLLADDVTWRNFIGTVQRIK 207
             ++ ++ L  +L+ MF E      +      T+Q  +GDWLL  DVTW+ F  +V RI 
Sbjct: 181 KLFNSYESLTNSLITMFTEYEDCDREDTNYTFTFQGKEGDWLLRGDVTWKIFAESVHRIS 240

[Close]

BLAST of CmoCh11G005280 vs. ExPASy Swiss-Prot
Match: Q6K846 (Auxin-responsive protein IAA9 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA9 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.5e-15
Identity = 52/145 (35.86%), Postives = 71/145 (48.97%), Query Frame = 0


Query: 72  DPHSASNDSDEEEEEEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGGGLNWNSNSRYV 131
           D  S  N SD++       +VGWPP+   +                  GG N      YV
Sbjct: 57  DDGSCCNTSDDDCRRRKKTVVGWPPVSSARRAC---------------GGAN------YV 116

Query: 132 KVKMEGVGIGRKVDLSQYHCFDELRATLMKMFDEMDPDGQR--------------LTYQD 191
           KVK EG  IGRKVDL+ +  +DEL ATL +MF   D  G++              +TY+D
Sbjct: 117 KVKKEGDAIGRKVDLALHSSYDELAATLARMFPTNDHQGEKKMANDDHGDAAGPVVTYED 176

Query: 192 IDGDWLLADDVTWRNFIGTVQRIKL 203
            DGDW+L  DV W +F  +V+R+K+
Sbjct: 177 GDGDWMLVGDVPWDDFARSVKRLKI 180

[Close]

BLAST of CmoCh11G005280 vs. ExPASy Swiss-Prot
Match: Q38829 (Auxin-responsive protein IAA11 OS=Arabidopsis thaliana OX=3702 GN=IAA11 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-14
Identity = 48/147 (32.65%), Postives = 77/147 (52.38%), Query Frame = 0


Query: 90  RLVGWPPLKKRKTRSLMQKRRGRGRPAVN---GGGLNWN-------SNSRYVKVKMEGVG 149
           ++VGWPP++  +  S++ + +       N      +N N        NS +VKV M+G+ 
Sbjct: 88  QVVGWPPIRTYRMNSMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSMFVKVTMDGIP 147

Query: 150 IGRKVDLSQYHCFDELRATLMKMF-------------------DEMDPDGQR---LTYQD 205
           IGRK+DL+ + C++ L  TL +MF                    ++ PDG     LTY+D
Sbjct: 148 IGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILPDGSSGLVLTYED 207

[Close]

BLAST of CmoCh11G005280 vs. ExPASy Swiss-Prot
Match: Q5VRR0 (Auxin-responsive protein IAA20 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA20 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.4e-14
Identity = 74/212 (34.91%), Postives = 99/212 (46.70%), Query Frame = 0


Query: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLD-LNSTIRKKRPLHVDPSLAFRRTLPLLLW 60
           MEL+LGL L  A P    +        S LD LNS     R    + +L   +T      
Sbjct: 1   MELELGLRL--ALPSPSPSPATATAAGSELDLLNSAPGSCRKRGFEEALGGFKT------ 60

Query: 61  NDHPNNGDDDDNDPHSASNDSDEEEEEEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNG 120
                + D+DD +      DSD E   +  +LVGWPP+K       + +RR  G     G
Sbjct: 61  -----DDDNDDGNGRGGDGDSDGEMGNKRRKLVGWPPVK------CLHRRRDGG----CG 120

Query: 121 GGLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFDEMD-PDGQ------- 180
           GG        YVKVKMEG+ IGRK+DLS    + EL  TL  MF   +  DG        
Sbjct: 121 GG--------YVKVKMEGLAIGRKLDLSILGSYAELLDTLHLMFPSTNQEDGHDRRRRHP 180

Query: 181 -RLTYQDIDGDWLLADDVTWRNFIGTVQRIKL 203
             +TY+D +GDW+   DV W  F  +V+R+K+
Sbjct: 181 YAVTYEDGEGDWMQVGDVPWEAFAKSVKRLKI 181

[Close]

BLAST of CmoCh11G005280 vs. ExPASy Swiss-Prot
Match: Q38830 (Auxin-responsive protein IAA12 OS=Arabidopsis thaliana OX=3702 GN=IAA12 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.1e-13
Identity = 48/147 (32.65%), Postives = 77/147 (52.38%), Query Frame = 0


Query: 89  NRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGGG------------LNWNSNSR-----YV 148
           +++VGWPP+   +  SL+  +  +   A  G G            ++   N +     +V
Sbjct: 68  SQVVGWPPIGLHRMNSLVNNQAMKAARAEEGDGEKKVVKNDELKDVSMKVNPKVQGLGFV 127

Query: 149 KVKMEGVGIGRKVDLSQYHCFDELRATLMKMF---------DEMDP----DGQR---LTY 203
           KV M+GVGIGRKVD+  +  ++ L  TL +MF         +++ P    DG     LTY
Sbjct: 128 KVNMDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMTGTTCREKVKPLRLLDGSSDFVLTY 187

[Close]

BLAST of CmoCh11G005280 vs. ExPASy TrEMBL
Match: A0A6J1F6G3 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111441247 PE=3 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 4.1e-113
Identity = 207/212 (97.64%), Postives = 207/212 (97.64%), Query Frame = 0


Query: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60
           MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN
Sbjct: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60

Query: 61  DHPNNGDDDDNDPHSASNDSDEEEEEEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGG 120
           DHPNNGDDDDNDPHSASNDSDEEEEEEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGG
Sbjct: 61  DHPNNGDDDDNDPHSASNDSDEEEEEEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGG 120

Query: 121 GLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMF-----DEMDPDGQRLTY 180
           GLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMF     DEMDPDGQRLTY
Sbjct: 121 GLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFGYLETDEMDPDGQRLTY 180

Query: 181 QDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG 208
           QDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG
Sbjct: 181 QDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG 212

[Close]

BLAST of CmoCh11G005280 vs. ExPASy TrEMBL
Match: A0A6J1I2H3 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111469303 PE=3 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 8.6e-111
Identity = 199/207 (96.14%), Postives = 203/207 (98.07%), Query Frame = 0


Query: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60
           MELQLGLSLIPAKPFDLNNSLLLHDTASCLDL STIRKKRPLHVDPS AFRRTLPLLLWN
Sbjct: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLTSTIRKKRPLHVDPSSAFRRTLPLLLWN 60

Query: 61  DHPNNGDDDDNDPHSASNDSDEEEEEEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGG 120
           DHPNNGDDDDNDPHSASNDSDE+E+EEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGG
Sbjct: 61  DHPNNGDDDDNDPHSASNDSDEDEDEEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGG 120

Query: 121 GLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFDEMDPDGQRLTYQDIDG 180
           GLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFD+LRATLMKMFD+MDPD  RLTYQDIDG
Sbjct: 121 GLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDQLRATLMKMFDKMDPDSHRLTYQDIDG 180

Query: 181 DWLLADDVTWRNFIGTVQRIKLEKNRG 208
           DWLLADDVTWRNFIGTVQRIKLEKNRG
Sbjct: 181 DWLLADDVTWRNFIGTVQRIKLEKNRG 207

[Close]

BLAST of CmoCh11G005280 vs. ExPASy TrEMBL
Match: A0A6J1HA19 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111461467 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 1.1e-65
Identity = 143/217 (65.90%), Postives = 161/217 (74.19%), Query Frame = 0


Query: 1   MELQLGLSLI---PAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLL 60
           MELQL L+L    P KPFDLN     H    CLD +S  RKKRPL +DPS AFRRTLPLL
Sbjct: 3   MELQLSLALFPTNPTKPFDLNTH---HRALPCLDFDSISRKKRPLDIDPSSAFRRTLPLL 62

Query: 61  LWNDHPNNGDDDDNDPHSASNDSDEEEEEEDNRLVGWPPLKKRKTRSLMQKRRGRG---- 120
           LWNDHPNNGDDD  +P+SAS++  +  EE++  LVGWPPLKKR+    +QKR GR     
Sbjct: 63  LWNDHPNNGDDDPKNPNSASSNHPDNPEEQEIELVGWPPLKKRRKTLFVQKRIGRAVAIR 122

Query: 121 RPAV-NGGG----LNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFDEMDP 180
           RPA+ N GG    LN N NSRYVKVKMEGVGIGRKVD+ Q+HC D LRATLM MFD+ D 
Sbjct: 123 RPAMENDGGVYRELNSN-NSRYVKVKMEGVGIGRKVDIRQHHCLDALRATLMNMFDKPDS 182

Query: 181 DGQRLTYQDIDGDWLLADDVTWRNFIGTVQRIKLEKN 206
           DG  LTYQD DGDWLLA+DVTWR+FI TVQRIKLEKN
Sbjct: 183 DGYNLTYQDTDGDWLLAEDVTWRDFIRTVQRIKLEKN 215

[Close]

BLAST of CmoCh11G005280 vs. ExPASy TrEMBL
Match: A0A6J1JF88 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111485214 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 2.5e-65
Identity = 140/216 (64.81%), Postives = 162/216 (75.00%), Query Frame = 0


Query: 1   MELQLGLSLI---PAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLL 60
           MELQLGL+L    P KPF LN     H    CLD +S   KKRPL +DPS AFRRTLPLL
Sbjct: 81  MELQLGLALFPTNPTKPFHLNTH---HRALPCLDFDSISGKKRPLDIDPSSAFRRTLPLL 140

Query: 61  LWNDHPNNGDDDDNDPHSASNDSDEEEEEEDNRLVGWPPLKKRKTRSLMQKRRGRG---- 120
           LWNDHPN+GDDD NDP+SAS++  +  +E++  LVGWPPLKKR+    +QKR  R     
Sbjct: 141 LWNDHPNDGDDDPNDPNSASSNHPDNPKEQEIELVGWPPLKKRRKTLFVQKRIRRAVVIR 200

Query: 121 RPAV-NGGGLNW---NSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFDEMDPD 180
           RPA+ NGGG++    ++NS YVKVKMEGVGIGRKVD+ Q+HCFD LRATLM MFD+ D D
Sbjct: 201 RPAMENGGGVHRELNSNNSLYVKVKMEGVGIGRKVDIRQHHCFDALRATLMNMFDKPDSD 260

Query: 181 GQRLTYQDIDGDWLLADDVTWRNFIGTVQRIKLEKN 206
           G  LTYQD DGDWLLADDVTWR+FI TVQRIKLEKN
Sbjct: 261 GYNLTYQDTDGDWLLADDVTWRDFIRTVQRIKLEKN 293

[Close]

BLAST of CmoCh11G005280 vs. ExPASy TrEMBL
Match: A0A0A0LWC5 (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_1G231530 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 1.1e-60
Identity = 133/219 (60.73%), Postives = 159/219 (72.60%), Query Frame = 0


Query: 1   MELQLGLSLIPA---KPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLL 60
           MELQLGL+LIP    KPFDLN     ++    L  +S   KKR  H+D    FR+TLPLL
Sbjct: 85  MELQLGLALIPTNPIKPFDLNTH---NNNPISLVFDSINHKKRSRHLDSPATFRQTLPLL 144

Query: 61  LWNDHPNNGDDDD-NDPHSASNDSDEEEEEEDNRLVGWPPLKKRKTRSLMQKRRGR---- 120
           LWNDHPN+GDDDD NDPHSAS++  +EEEEE+N LVGWPPLKKR+    M++  GR    
Sbjct: 145 LWNDHPNDGDDDDPNDPHSASSNDSDEEEEEENGLVGWPPLKKRRKSLFMKEGVGRRAVI 204

Query: 121 GRPAVNGGGLNWN----SNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFDEMDP 180
            RPAV   G+ W     +NSRYVKVKMEGVGI RKVDL ++H FD LRATLMKMFDE + 
Sbjct: 205 RRPAVKNDGVFWRGLDLNNSRYVKVKMEGVGIARKVDLREHHSFDALRATLMKMFDETNS 264

Query: 181 DGQRLTYQDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG 208
           +G +LT+Q+  G+WLLA++VTWRNFIGTVQRI LEK  G
Sbjct: 265 EGYKLTFQNTKGEWLLAENVTWRNFIGTVQRINLEKKSG 300

[Close]

BLAST of CmoCh11G005280 vs. NCBI nr
Match: KAG6587888.1 (Auxin-responsive protein IAA29, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 419.9 bits (1078), Expect = 1.3e-113
Identity = 205/207 (99.03%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60
           MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN
Sbjct: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60

Query: 61  DHPNNGDDDDNDPHSASNDSDEEEEEEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGG 120
           DHPNNGDDDDNDPHSASNDSDEEEEEEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGG
Sbjct: 61  DHPNNGDDDDNDPHSASNDSDEEEEEEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGG 120

Query: 121 GLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFDEMDPDGQRLTYQDIDG 180
           GLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMF+EMDPDG RLTYQDIDG
Sbjct: 121 GLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFEEMDPDGHRLTYQDIDG 180

Query: 181 DWLLADDVTWRNFIGTVQRIKLEKNRG 208
           DWLLADDVTWRNFIGTVQRIKLEKNRG
Sbjct: 181 DWLLADDVTWRNFIGTVQRIKLEKNRG 207

[Close]

BLAST of CmoCh11G005280 vs. NCBI nr
Match: XP_022934015.1 (auxin-responsive protein IAA29-like [Cucurbita moschata])

HSP 1 Score: 417.2 bits (1071), Expect = 8.5e-113
Identity = 207/212 (97.64%), Postives = 207/212 (97.64%), Query Frame = 0


Query: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60
           MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN
Sbjct: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60

Query: 61  DHPNNGDDDDNDPHSASNDSDEEEEEEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGG 120
           DHPNNGDDDDNDPHSASNDSDEEEEEEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGG
Sbjct: 61  DHPNNGDDDDNDPHSASNDSDEEEEEEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGG 120

Query: 121 GLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMF-----DEMDPDGQRLTY 180
           GLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMF     DEMDPDGQRLTY
Sbjct: 121 GLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFGYLETDEMDPDGQRLTY 180

Query: 181 QDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG 208
           QDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG
Sbjct: 181 QDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG 212

[Close]

BLAST of CmoCh11G005280 vs. NCBI nr
Match: XP_022970300.1 (auxin-responsive protein IAA29-like [Cucurbita maxima])

HSP 1 Score: 409.5 bits (1051), Expect = 1.8e-110
Identity = 199/207 (96.14%), Postives = 203/207 (98.07%), Query Frame = 0


Query: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60
           MELQLGLSLIPAKPFDLNNSLLLHDTASCLDL STIRKKRPLHVDPS AFRRTLPLLLWN
Sbjct: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLTSTIRKKRPLHVDPSSAFRRTLPLLLWN 60

Query: 61  DHPNNGDDDDNDPHSASNDSDEEEEEEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGG 120
           DHPNNGDDDDNDPHSASNDSDE+E+EEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGG
Sbjct: 61  DHPNNGDDDDNDPHSASNDSDEDEDEEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGG 120

Query: 121 GLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFDEMDPDGQRLTYQDIDG 180
           GLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFD+LRATLMKMFD+MDPD  RLTYQDIDG
Sbjct: 121 GLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDQLRATLMKMFDKMDPDSHRLTYQDIDG 180

Query: 181 DWLLADDVTWRNFIGTVQRIKLEKNRG 208
           DWLLADDVTWRNFIGTVQRIKLEKNRG
Sbjct: 181 DWLLADDVTWRNFIGTVQRIKLEKNRG 207

[Close]

BLAST of CmoCh11G005280 vs. NCBI nr
Match: XP_023529300.1 (auxin-responsive protein IAA29-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 401.0 bits (1029), Expect = 6.3e-108
Identity = 201/213 (94.37%), Postives = 204/213 (95.77%), Query Frame = 0


Query: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60
           MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN
Sbjct: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60

Query: 61  DHPNNGDDDDNDPHSASNDS-DEEEEEEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNG 120
           DHPNNGDDDDNDPHSASNDS DEEE+EE+NRLVGWPPLKKRKTRSLMQKRRGRGRPAVNG
Sbjct: 61  DHPNNGDDDDNDPHSASNDSDDEEEDEEENRLVGWPPLKKRKTRSLMQKRRGRGRPAVNG 120

Query: 121 GGLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMF-----DEMDPDGQRLT 180
           GGLNWN NSRYVKVKM+GVGIGRKVDLSQYHCFDELRATLMKMF     DEMDPD  RLT
Sbjct: 121 GGLNWNWNSRYVKVKMDGVGIGRKVDLSQYHCFDELRATLMKMFGYLETDEMDPDRHRLT 180

Query: 181 YQDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG 208
           YQDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG
Sbjct: 181 YQDIDGDWLLADDVTWRNFIGTVQRIKLEKNRG 213

[Close]

BLAST of CmoCh11G005280 vs. NCBI nr
Match: KAG7021773.1 (Auxin-responsive protein IAA29, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 329.7 bits (844), Expect = 1.8e-86
Identity = 163/166 (98.19%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60
           MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN
Sbjct: 1   MELQLGLSLIPAKPFDLNNSLLLHDTASCLDLNSTIRKKRPLHVDPSLAFRRTLPLLLWN 60

Query: 61  DHPNNGDDDDNDPHSASNDSDEEEEEEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGG 120
           DHPNNGDDDDNDPHSASNDSDEEEEEEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGG
Sbjct: 61  DHPNNGDDDDNDPHSASNDSDEEEEEEDNRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGG 120

Query: 121 GLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFDEM 167
           GLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMF ++
Sbjct: 121 GLNWNSNSRYVKVKMEGVGIGRKVDLSQYHCFDELRATLMKMFGKI 166

[Close]

BLAST of CmoCh11G005280 vs. TAIR 10
Match: AT4G32280.1 (indole-3-acetic acid inducible 29 )

HSP 1 Score: 91.7 bits (226), Expect = 7.6e-19
Identity = 77/245 (31.43%), Postives = 108/245 (44.08%), Query Frame = 0


Query: 1   MELQLGLSLIPAKP------FDLNNSLLLHDTASCLDLNS-TIRKKRPLHVDPSLAFRRT 60
           MEL LGLSL P K       FDLN    +   ASCL            L       +   
Sbjct: 1   MELDLGLSLSPHKSSKLGFNFDLNKHCAIEGAASCLGTEKLRFEATFGLGNVEENCYMPK 60

Query: 61  LPLLLWNDHPNNGDDDDNDPHSASNDSDEEEEEEDNRLVGWPPLKK-------------R 120
             L   N  PN   ++D DP  + +    ++EEE++ +VGWPP+K              R
Sbjct: 61  QRLFALNGQPN---EEDEDPLESESSIVYDDEEENSEVVGWPPVKTCMIKYGSYHHRHIR 120

Query: 121 KTRSLMQKRRGRGRPAVNGGGLN--------------WNSNSRYVKVKMEGVGIGRKVDL 180
                    RGR   A+N    N               + +S YVKVKM+GV I RKVD+
Sbjct: 121 NHHHCPYHHRGRRITAMNNNISNPTTATVGSSSSSSISSRSSMYVKVKMDGVAIARKVDI 180

Query: 181 SQYHCFDELRATLMKMFDE-----MDPDGQRLTYQDIDGDWLLADDVTWRNFIGTVQRIK 207
             ++ ++ L  +L+ MF E      +      T+Q  +GDWLL  DVTW+ F  +V RI 
Sbjct: 181 KLFNSYESLTNSLITMFTEYEDCDREDTNYTFTFQGKEGDWLLRGDVTWKIFAESVHRIS 240

[Close]

BLAST of CmoCh11G005280 vs. TAIR 10
Match: AT4G28640.1 (indole-3-acetic acid inducible 11 )

HSP 1 Score: 81.6 bits (200), Expect = 7.9e-16
Identity = 48/147 (32.65%), Postives = 77/147 (52.38%), Query Frame = 0


Query: 90  RLVGWPPLKKRKTRSLMQKRRGRGRPAVN---GGGLNWN-------SNSRYVKVKMEGVG 149
           ++VGWPP++  +  S++ + +       N      +N N        NS +VKV M+G+ 
Sbjct: 88  QVVGWPPIRTYRMNSMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSMFVKVTMDGIP 147

Query: 150 IGRKVDLSQYHCFDELRATLMKMF-------------------DEMDPDGQR---LTYQD 205
           IGRK+DL+ + C++ L  TL +MF                    ++ PDG     LTY+D
Sbjct: 148 IGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILPDGSSGLVLTYED 207

[Close]

BLAST of CmoCh11G005280 vs. TAIR 10
Match: AT4G28640.2 (indole-3-acetic acid inducible 11 )

HSP 1 Score: 81.6 bits (200), Expect = 7.9e-16
Identity = 48/147 (32.65%), Postives = 77/147 (52.38%), Query Frame = 0


Query: 90  RLVGWPPLKKRKTRSLMQKRRGRGRPAVN---GGGLNWN-------SNSRYVKVKMEGVG 149
           ++VGWPP++  +  S++ + +       N      +N N        NS +VKV M+G+ 
Sbjct: 88  QVVGWPPIRTYRMNSMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSMFVKVTMDGIP 147

Query: 150 IGRKVDLSQYHCFDELRATLMKMF-------------------DEMDPDGQR---LTYQD 205
           IGRK+DL+ + C++ L  TL +MF                    ++ PDG     LTY+D
Sbjct: 148 IGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILPDGSSGLVLTYED 207

[Close]

BLAST of CmoCh11G005280 vs. TAIR 10
Match: AT4G28640.3 (indole-3-acetic acid inducible 11 )

HSP 1 Score: 81.6 bits (200), Expect = 7.9e-16
Identity = 48/147 (32.65%), Postives = 77/147 (52.38%), Query Frame = 0


Query: 90  RLVGWPPLKKRKTRSLMQKRRGRGRPAVN---GGGLNWN-------SNSRYVKVKMEGVG 149
           ++VGWPP++  +  S++ + +       N      +N N        NS +VKV M+G+ 
Sbjct: 88  QVVGWPPIRTYRMNSMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSMFVKVTMDGIP 147

Query: 150 IGRKVDLSQYHCFDELRATLMKMF-------------------DEMDPDGQR---LTYQD 205
           IGRK+DL+ + C++ L  TL +MF                    ++ PDG     LTY+D
Sbjct: 148 IGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILPDGSSGLVLTYED 207

[Close]

BLAST of CmoCh11G005280 vs. TAIR 10
Match: AT1G04550.2 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-14
Identity = 48/147 (32.65%), Postives = 77/147 (52.38%), Query Frame = 0


Query: 89  NRLVGWPPLKKRKTRSLMQKRRGRGRPAVNGGG------------LNWNSNSR-----YV 148
           +++VGWPP+   +  SL+  +  +   A  G G            ++   N +     +V
Sbjct: 68  SQVVGWPPIGLHRMNSLVNNQAMKAARAEEGDGEKKVVKNDELKDVSMKVNPKVQGLGFV 127

Query: 149 KVKMEGVGIGRKVDLSQYHCFDELRATLMKMF---------DEMDP----DGQR---LTY 203
           KV M+GVGIGRKVD+  +  ++ L  TL +MF         +++ P    DG     LTY
Sbjct: 128 KVNMDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMTGTTCREKVKPLRLLDGSSDFVLTY 187

The following BLAST results are available for this feature:

BLAST of CmoCh11G005280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93WC4	1.1e-17	31.43	Auxin-responsive protein IAA29 OS=Arabidopsis thaliana OX=3702 GN=IAA29 PE=1 SV=...	[more]
Q6K846	8.5e-15	35.86	Auxin-responsive protein IAA9 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA9 P...	[more]
Q38829	1.1e-14	32.65	Auxin-responsive protein IAA11 OS=Arabidopsis thaliana OX=3702 GN=IAA11 PE=1 SV=...	[more]
Q5VRR0	9.4e-14	34.91	Auxin-responsive protein IAA20 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA20...	[more]
Q38830	2.1e-13	32.65	Auxin-responsive protein IAA12 OS=Arabidopsis thaliana OX=3702 GN=IAA12 PE=1 SV=...	[more]

BLAST of CmoCh11G005280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F6G3	4.1e-113	97.64	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111441247 PE=3 SV=1	[more]
A0A6J1I2H3	8.6e-111	96.14	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111469303 PE=3 SV=1	[more]
A0A6J1HA19	1.1e-65	65.90	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111461467 PE=3 SV=1	[more]
A0A6J1JF88	2.5e-65	64.81	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111485214 PE=3 SV=1	[more]
A0A0A0LWC5	1.1e-60	60.73	Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_1G231530 PE=3 SV=1	[more]

BLAST of CmoCh11G005280 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587888.1	1.3e-113	99.03	Auxin-responsive protein IAA29, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022934015.1	8.5e-113	97.64	auxin-responsive protein IAA29-like [Cucurbita moschata]	[more]
XP_022970300.1	1.8e-110	96.14	auxin-responsive protein IAA29-like [Cucurbita maxima]	[more]
XP_023529300.1	6.3e-108	94.37	auxin-responsive protein IAA29-like [Cucurbita pepo subsp. pepo]	[more]
KAG7021773.1	1.8e-86	98.19	Auxin-responsive protein IAA29, partial [Cucurbita argyrosperma subsp. argyrospe...	[more]

BLAST of CmoCh11G005280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32280.1	7.6e-19	31.43	indole-3-acetic acid inducible 29	[more]
AT4G28640.1	7.9e-16	32.65	indole-3-acetic acid inducible 11	[more]
AT4G28640.2	7.9e-16	32.65	indole-3-acetic acid inducible 11	[more]
AT4G28640.3	7.9e-16	32.65	indole-3-acetic acid inducible 11	[more]
AT1G04550.2	1.5e-14	32.65	AUX/IAA transcriptional regulator family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033389	AUX/IAA domain	PFAM	PF02309	AUX_IAA	coord: 173..204 e-value: 5.8E-7 score: 29.6 coord: 70..166 e-value: 7.0E-17 score: 62.1
None	No IPR available	GENE3D	3.10.20.90		coord: 124..207 e-value: 5.2E-22 score: 79.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..121
None	No IPR available	PANTHER	PTHR31734:SF38	AUXIN-RESPONSIVE PROTEIN IAA20	coord: 1..205
None	No IPR available	SUPERFAMILY	54277	CAD & PB1 domains	coord: 125..203
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	AUXIN-RESPONSIVE PROTEIN IAA17	coord: 1..205
IPR000270	PB1 domain	PROSITE	PS51745	PB1	coord: 128..207 score: 22.818064

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G005280.1	CmoCh11G005280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding