CmoCh11G003350 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G003350
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	tRNA pseudouridine synthase
Location	Cmo_Chr11: 1631169 .. 1639193 (-)
RNA-Seq Expression	CmoCh11G003350
Synteny	CmoCh11G003350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCGGTGCCTTTTCGGCGATTCACGACTTGGGTTTCTGTTTTATGTGGATTTGTTTTTTTTTCTTTTTTTTGGGGGTGGTGGTGGATAGGTTTAGTTAGCATATTAAATTTTGTTAGTTTTGGGTATAATATTGTGCTGCTCTGCTTGGCATGCTTTGAAACTATGAAAGATTTGTAATTTGAACGAAATTTTCGATCTATTTTGCATTTCTTCTGAAATATTATAACTCTTGATGCACTTTTTCCCCCGAAGTTTCGAATTCAACTGTTTTAGACTTTATTTTCAGATCCTTCATGACTGGTGGAAATTGGGTGACATGCTGTATTATCAAAAGGCCCTTTTTGTGCTGTATATTGTTCCTACCTTCTTTCTCAATGGTAACTGATAAAAGTTTTATACTCACCCTTGTATGACTTGATTCTATTATCCTTCCTCATGTTGTAGTATGTAAAATGTTTCCTTCAAAATCTGATCATGAATAAGTTTTAACCAAAATGTCTAATATCTCTTTGACGTGAGTGTGAGACTTCTGTTAGTAGTGTTCATGTTCTTAGCATCTTGTGGTATCTGACCTAGCCTATGTTGAGTTGCTATCATTTTTTCTGTTAGATACACTGTCCTGTATGTGTTGGTTCCGGCTTTGATTCATAACAGAAACATTTCTGTGGCCTCGGTAGCTTTGTATTCTTTGTTCATTGGAGTTTGGCATGCGTATCGGTTGTTCTTCTTGCTGATGGTGTGTTGTATTCAAAGTCCTTCACTTGTGTGAATTGCAGTTGCAACATCCCTTGCTTTCGAGCCCAAGCCTATGTTTGCTTAGTAAGTCAGCTTAAGCTCGAAAGGTTGCTTTTCGAATGAGATAATAGAAGAAGCTATCTTAAGGGGCCTCCTCTTGACCTTCTTATTATTATTCAAAGGGGAAAGGGGCAACCAACATAGGAGGCTAGCTTGCTTCCACTGGTGGCGGGCGAAGGGTCCAAAGAAAGGACACGTAGCCGGGGGCAAGTCACAATCCAATAGTGATCTTTTCCTTCCTGTTCATCAATCAGAAAGAAAGACAAACCGGGCACTACGGCCCGGTTTAGTTATTGATGCTCAATCCGAAAGATTGAGAATGATTTTAGTGATTCTTGACTCAACTTGGCTTCTGACATTTCCACTGGATTTTGGGTCCATCTATTGTTGGCTAGTTTGGCTGTCCTGTCCATAATTTGAGTACTGGCGAATGCTATGTGTGTTTCATTCTGTTCTTCTTACTTGTTTCAATTTATTTGTATTGACTTTCTATAGCTAATATAAGAGTCATATTACTTTCCAAGTAATTTGTTCAAAGTTTCTTTGCATCAATCTCAACCCAATGTTGATACTTGATGTTGTTCTCACGGTAGTTTCCATTTAGCTCGATCTTTGGAGGCTTTTGCTTTTGGAGAGTTTAAGCCCATCGTTACAAATATTGTCTGCTTTGGGCCGTTGTGTATCGTCATCAGCCTCATAGTTTTAGAACTCGGGATCTCATAATCCCACTCCTTTGGGGGCCCAACGTTCTTGCTAGTACATTGGTCGGTGTCTAGCTCTAATACCATTTGTAACAGTCTAAGCTTACTATTAGTAATATTGTCTGTTTTAGTCTGTTACATGTCGCTATCAACCTCACGATTTTAAAACACGTCTATTAGGGAGAGGTTTCCAGAACCTTCTTCTCTCTTTGCACCCGTCATTTAGAAATGGTAACCTGAAGATAGGTGTTGAGTTCGTCAGAAAAGCTATGAAGCTTGGGGTGTTAATGAATAATGAAGAAACATACCACTCTTCTCTTCCAATCATCCTGCTAAATCATATATTTTCAAGATTCGTTCACTTTTGCAGGGATTAAGGGCTTTAGCCCCATGAATTTGGTTTGAGTGCTTGTGTTGTGAGCTTGTACGTGAATTTCTTCGTTTCAAGCTATTAGCTTGGTGGTTCAGCAAATCGTACTTCTTTTTGAAATCCATTACACCTTGGCATTTTATGAACTTGAAACAAGACACTGAAACCGTTATTGCGATGAACGTAAGCCTTAGAATTGGAAAACGTTCTTCCACTGATATCGGATTCAAAACGTTCTTATTCAATAAGATAGCTCAAGACCATTACTTCGTAGCGAAAAAAGGCAAATAGTTTAGCATTTGGATATTTACAACATTTAAAAGGTAAAGTTTGTAGTCAATTTTTTTTACTATAAGCTATAGAGTACAGAGTACGAGGGTATGAACCTCCGACATTACGAGTGAAACAAATCAAACCCATTTGGAACAACCCCAAATGTAATATCCCCATCAAGAATATCAAGAACCAGTGTACAAGCAGAGAATCTTGGTGGGTCCAGGTAGGTATAGATAGTTTGTAGTTTGTATTCTATTTGAACTTGAACATCTGACCTATGTTTATCCAAGGAAATTATACTCGGCCCAAATCCAGCAACATAATCTAGTCGACTAACTCAGGCTCGCATACCTTGATGGGCTCGGCCATATTGGGCTTTTTCCGGTTGGACGAATATGGGCTTGCTCTCTTACATCTACTTGACTGCACTACGTGGATTTACAATATCGTCCCTGCCGCGCCGGCGGCTGCAACTGCAAAATACAGTCGTCCGCTCAGGTTGGGTGGTGCGGTGGTTATGATACCAAATCCAAGGGCTATACTGCTATCATCATCAGGTGCCGGTTTCGGTTTCGGTATTAAGTGTCTGATGGAGAATCGAGCTCAGAAAAAGGACTATCTTCACTATAACCACACTGATCGTTGCAGAAATGCCCGATGGACTTCCAGGTTTTACTTTCGTACATTTTCGTTATCTATTGCTTGAATCGATTTGAAATTTTCCGTGAGGTACTTCGAATCGGATTCTGTATCTGCGAGAGGTTCGCTTTTGTTTGTAGTAATTCAATCTGAATCTGAGAAGGTTGTCAATCAAGATGTTGTATGCTTTTGGCAGGGAAAGCTACCAATTCATGTATGAAAGGCCGTGGCAAGAAGTGCTTGATTTTTACTCTCATGCTGTTAATGGAAGATTATCACTGTCCTCGCTTGGAACTGAGGTGGGTGTCCAATATCAACGATTTCTATAAACTTATTTTCATTTGCAAACTTGTTGCCTCTTTCTTTATGACTCTTCCGTTTCTTAAGATGAAAGCAATGGAATTGTGAACTAGGAATCTTTTTTCCCTCCCTTGCGACCATGTGAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTGATGCTAACTCTAAGAATGAGCTTTATATATCTAATGCTGCTTACATTGTAATGTTGTATCAGCATGAGTTACTTTCGTTTACTCCAAGCAATGCGGTTCCATGAGTAGTTAAAAACAATCATGAATCCTCCTCCTGCAACCTAAAATAGTAGGGAAAAGAGCGAGGATAATGTAATTGTTGTACGACTTTGTAAATCCTGGATTTCCTTTTGTTCAGGTTCTCTGGTTCTTACTTTAAGATTTGCTTTAGTACTAATTTTTTCTTGGATTCTCAGTTTTAGAGATGAGTTTTAATCAAATCCTTGCTATCGATTCTTACATTTGATTTAGTGATCGGCTTCATGTTTTTTTAGAAAATCTTGTTTTATAAATTCCATTGGTTGATTACAATTAGAAAAGATGAGGATGAAAATTTTGTTCTTTAATTATCTTTCTGTATAAAACAAGAAGATATCATTTATTTATAGTTTTTAGTACTTTATCCACAGACAGTTCGTGATCATGATGATACTGAGATTCAACCGGTTTGCAACACTGCAGAGTTAAACAGAGCTCCGGGTAAAGATGGGACTGGGAGGTGGGCAAGGGCAACATTTAAGATTGTTCTTTCCTACCATGGAAATTCTTTTGATGGGTGGCAAAAGCAGCCAGAGTTGAATACTGTTCAGGGGTAAGCATGTATCAAGAAAATGTGAACCATATGCCAAGTAATATACATACCATTTGGGAGCTTTTGAAGCTAGCAATGTTCTTTTCATTATGAAGTCTTAATAAAAAAAAATTCTTAAGTATTTGTAAGTTTTAGATAATGTTTGAGAAGATAGTTCTAGAGATACAATTGAGGAATCTTTTTTTGTGGAGAATTGAGTGCTAGAGATAGAATTGAAAATCCAATGCCTCCAGTTCAAGTGAAACATTCCTCTTGAGTTCATTGTCCAAATTTGGTCAACCAACCTTACTAATCTCACTTTTCCTTTTATCGTATCTCCTTCTTCTAGTATAATAGCTTAAAGTAGTATTTTAATACCTTTTGATGCATAAATAGTTTGATTGCAATCTAGAAATGGAAAGCACTCCTGTATATTATATGATTATTTCTACTTGTATCCTTTGGCAGTGTGGTGGAAAAATCTCTTGGGAAATTTGTAGATGAGAAAAAAGCTCAGCAGCTGAAAGATAGATGCTTACCGATAGAAGGATGTGCTGTGGTTGCTGGGCGCACTGACAAAGGGGTGACAGCTTTGCGACAAGTTTGCTCATTCTGTATGTTAGTTTTTAATCTTTATTGACATGACTTTTTTGCTTGTTTAGATATTTAATTCCACAACTCTGTTATATTTTTCTTAGATTTTATCTCATCTAAAAAATGAAGTCTTATATTAGAATAGATTTTATCTTCTATATTATTTCTTGACATCTTTGGTAATTGTTGAAAGTAAGTAGTATTAAAACAGGCATGGTGTAATCATAGCTCTTTTATTGATTAAGGTCTCATAAAATTTTCCTTTTTAAATAATCGGTAGGAGGTGCTACACTGGAACTAAGCCAGGGAATAACTTTCCCATAAAAAGTAGCCAGAGTTAAAAAAAAAAAAAAAAACGGCCGTACTGTGCGCACTGTAGTTTAACTAGGCCGATCTTTAGTTGCATATTGCTTAGAAGACTTGACCAAGATACCCATCACCGGTTATTAACTCATCTGCCATGGGACTTGGGAGTGCATTTCTTTTTACCATTTGCAGAGTTCCTTATCTGATGCTATATGAAAGGCAAGTTGGTGAAGAAGATTGAAGTTTTTGTTTGAATTATTTCCAATCTGGACCTCAACAACGACAATAGAATTCAAGCTAGGCATTAAAAATACGTGAGCATCACAATACCAATAATATAATTCAAGCTGAACCATGCTTCCTTTGGTTTGAGTTCTTTAACATAAATTTATACATGTGAAATTGTTTAGAAAAACACAATTAATATATGAAGTATTTGAGTTATTTTGGTTGGAGCGTAATCGCCGGATATTCGAGGACAAAGCTACTAATTTTGATTCAGTTTTCAAACACCTTACTTACCTTGCTCTCTTAGTGTAAATTCTCCTCTCATTTCCATGATTATAGGCTTTCATCTCTCATTATCCAATGGAAATGTTTTTTTGATTCCTCTGGCATATTTTTTGTCCTTTTGTAATTTCATCTCTTCAATGAAATGAGGGAAGCTATGTTCCTCACAAAAAGAAAAAAAGAAAAAAGAGTTGTAGCAATTTCTTTCCTTCATTGGTTTCAAATTTCCATTGGAAGGGAAAACGATTCTCTTTCTGACTTCACTCACTTAATTATTAATGTTCTATTTTAGAGATGCAATATCTGACTAAACTCCAATCACTTGTAGATACTTGGCGCACAGATGTTAAACCTCAAGACATTGAAGGTTCCATCAATAATGCAGCTCCGGGAAAACTCAGAGTCTTATCTGTTTCTCAGGTAATATTAAGGATTTGTTTTATTTATTTTTATTTTTTTATGAAAATGTGTCATTGGAATGAACGTGATGCTCCGGTGTCTAGCTTTAATATTGTTGCAGAACTGAGTGGTTTAACTTATCTTTCTATTTTTCTTGTCTCTATCTTTCAGATACATTATACATGTAACTTCTCATATCACTTTCTACTGTAGGTGTCTCGTATGTTCCATCCAAACTTCTCTGCTAAATGGAGGCGATATCTGTATATTTTTCCTCTGAAAGATGGAGAGAACATGGAGCCAAATTTTGCAATTTGGGAAGATGTAGAAAACATTAGAGAAGAGGAACATCGTGATAAAATAGAAGCTTTACATGGTGAATGCAAGGATGAGATCCTGAATAATTTGGTCCTCAGTCAGGATGATGAGGAGCCTGCATCAGCTAATAAGCCTCAAACATTTAGTATAATGAGGGTTAACCAACTACTAAGGAAACTAGAAGGAAAGTTATTGTCATACAAGATGTTTGCACGTGACACCAAAGCATCTAGAAACGAGTGAGAATCATGAATTGAATAAATTATTGGTTTTTTTTCCTCTTTTTTTTTTAGTTGTTCTAGCGTCAAGTTTGATTATCATTGTTCCCNCTCATAAAGGCTATTGTCACTTTCCTTCTTATTCTGCTCATAAAGCCTATCTACGTTTTCCTTCTTATTACGTTAGTCACTCTTTTGTATTCTTTTAGAAGCTATTTATAGGAATATGAAATGGATGAATCCAGTCTATATGTTCTTTTGTGGGATCTGTGGATAGAAAGGAACATGGTTTGTTCTCTCATAAAAATAAGGAAAGGAGGAGAGATGGGCAATGTTAAATTTGTAAGCAGTCGAGCCTAAGTTAAGGGCTGTTTGGAGTGTCTTTCCTAGTGCTTAAAACACTTCTTTAAGCACTTAGAAATCCTCCCAAACCGGCTCTTAGTTATATAGTTTATCAGTTGAGAATTTTTTATTTGTGTTATCATGAGATGAATGTGCGTGTAGATATGATCAGGATAGCTAGTCTGCAGATCGACTAAACAAAGTTAGTAATACAATTTGTCAATCGAGAACTTTTTGTTTGTGTCAACGTGAGATTAATATGCTTGCTTGTAGCTTTCCTTTTCCCAAATGTTTTCTTATCAATGATAGGATGAGGTTCGGATCTTTTTGACATGTACTAATGGTGACTTTCCTCCTTTTCAGAGGTCCACCTACGGAGTGTTTTGTATACCATGCCCGCGCAATGGAAGCTAGATTACCATGCTTGGTATCCACTTGTGGTCCCTTCATGCTCTCGACCTCCTTTTCTTTGATTATCTTTTTCCTTCCTCCCCTTCTTGAAATCTCTTTGTGGAGTTGTAACTGTAAAACATTATTCTATGCTCACTTACACTAAAAAAAGGTAGAAACTTGTTTTTTGCCTTGTGTTTTCCACTGGTTGAGAACATAGAGAACTGAAGATGAATTAGTGGAGAAGTGAGTGTGAGTCGAGGAGACATAGAATCTGTGGAAAATTATTTCAAAGCAAACGAGTCCAAGCATGAGCTCGATTCAATGCAAATTAAAATTTTATTGACAAGGGTTGCGTTCTCTTCTGTCAGTATCTTAATTTGGATAACCTTAGACAAATTCTGTTCCTTTCTGATCATACATACATGTATACTTATTTGTTTATCCATGTCTTAATACTCCAACAAAACTAGTGACGTGCTCTTGAATAACCCTATTCCGAATTTAGAGATCTAAGTGGTAGTGTTGTATTGACAGGACCAAGGCGTAGGAAGAAGTGTTATGTGTGTTGAGCTGGTTGCTAATCGCTTCTTGAGGAAGGTAACATCTCCAGGGTTAATTATGCTAATGGTTATTTTGTACTGAACGTAAAATTGGCCTTATTTAGATCCAACCTTTTAACCAACTGCTCAAACTTAAGCGTAAGCATTGGAATTTCCCCTCAGTTATAGCAATGTTATACAACCATAAGGCTCCTTCATATTTTGATGGCACTAATTATCGTCTTCGGTTGAATACTACCAATTATAAAGGAATCTAATCATGACCTTGCAGATGGTGCGGGTGCTTGTTGCAACAGCAATTAGAGAGGCAGCTGCGGGTGCTGGAGAGGATGCGTTACTAAAGCTGATGGATGCCACATGTCGACGTGCCACTGCACCTCCTGCGCCTCCTGATGGCCTCAGTCTCGTTGATGTAGGTTATACAGAATTTGATCCACAAAATTGCTTCATATTAAATGACTAA

mRNA sequence

ATGGATCGGTGCCTTTTCGGCGATTCACGACTTGGGTTTCTGTTTTATGTGGATTTGTTTTTTTTTCTTTTTTTTGGGGGTGGTGGCTCGCATACCTTGATGGGCTCGGCCATATTGGGCTTTTTCCGGTTGGACGAATATGGGCTTGCTCTCTTACATCTACTTGACTGCACTACGTGGATTTACAATATCGTCCCTGCCGCGCCGGCGGCTGCAACTGCAAAATACAGTCGTCCGCTCAGGTTGGGTGGTGCGGTGGTTATGATACCAAATCCAAGGGCTATACTGCTATCATCATCAGGTGCCGGTTTCGGTTTCGGTATTAAGTGTCTGATGGAGAATCGAGCTCAGAAAAAGGACTATCTTCACTATAACCACACTGATCGTTGCAGAAATGCCCGATGGACTTCCAGGGAAAGCTACCAATTCATGTATGAAAGGCCGTGGCAAGAAGTGCTTGATTTTTACTCTCATGCTGTTAATGGAAGATTATCACTGTCCTCGCTTGGAACTGAGACAGTTCGTGATCATGATGATACTGAGATTCAACCGGTTTGCAACACTGCAGAGTTAAACAGAGCTCCGGGTAAAGATGGGACTGGGAGGTGGGCAAGGGCAACATTTAAGATTGTTCTTTCCTACCATGGAAATTCTTTTGATGGGTGGCAAAAGCAGCCAGAGTTGAATACTGTTCAGGGTGTGGTGGAAAAATCTCTTGGGAAATTTGTAGATGAGAAAAAAGCTCAGCAGCTGAAAGATAGATGCTTACCGATAGAAGGATGTGCTGTGGTTGCTGGGCGCACTGACAAAGGGGTGACAGCTTTGCGACAAGTTTGCTCATTCTATACTTGGCGCACAGATGTTAAACCTCAAGACATTGAAGGTTCCATCAATAATGCAGCTCCGGGAAAACTCAGAGTCTTATCTGTTTCTCAGGTGTCTCGTATGTTCCATCCAAACTTCTCTGCTAAATGGAGGCGATATCTGTATATTTTTCCTCTGAAAGATGGAGAGAACATGGAGCCAAATTTTGCAATTTGGGAAGATGTAGAAAACATTAGAGAAGAGGAACATCGTGATAAAATAGAAGCTTTACATGGTGAATGCAAGGATGAGATCCTGAATAATTTGGTCCTCAGTCAGGATGATGAGGAGCCTGCATCAGCTAATAAGCCTCAAACATTTAGTATAATGAGGGTTAACCAACTACTAAGGAAACTAGAAGGAAAGTTATTGTCATACAAGATGTTTGCACGTGACACCAAAGCATCTAGAAACGAAGGTCCACCTACGGAGTGTTTTGTATACCATGCCCGCGCAATGGAAGCTAGATTACCATGCTTGGACCAAGGCGTAGGAAGAAGTGTTATGTGTGTTGAGCTGGTTGCTAATCGCTTCTTGAGGAAGATGGTGCGGGTGCTTGTTGCAACAGCAATTAGAGAGGCAGCTGCGGGTGCTGGAGAGGATGCGTTACTAAAGCTGATGGATGCCACATGTCGACGTGCCACTGCACCTCCTGCGCCTCCTGATGGCCTCAGTCTCGTTGATGTAGGTTATACAGAATTTGATCCACAAAATTGCTTCATATTAAATGACTAA

Coding sequence (CDS)

ATGGATCGGTGCCTTTTCGGCGATTCACGACTTGGGTTTCTGTTTTATGTGGATTTGTTTTTTTTTCTTTTTTTTGGGGGTGGTGGCTCGCATACCTTGATGGGCTCGGCCATATTGGGCTTTTTCCGGTTGGACGAATATGGGCTTGCTCTCTTACATCTACTTGACTGCACTACGTGGATTTACAATATCGTCCCTGCCGCGCCGGCGGCTGCAACTGCAAAATACAGTCGTCCGCTCAGGTTGGGTGGTGCGGTGGTTATGATACCAAATCCAAGGGCTATACTGCTATCATCATCAGGTGCCGGTTTCGGTTTCGGTATTAAGTGTCTGATGGAGAATCGAGCTCAGAAAAAGGACTATCTTCACTATAACCACACTGATCGTTGCAGAAATGCCCGATGGACTTCCAGGGAAAGCTACCAATTCATGTATGAAAGGCCGTGGCAAGAAGTGCTTGATTTTTACTCTCATGCTGTTAATGGAAGATTATCACTGTCCTCGCTTGGAACTGAGACAGTTCGTGATCATGATGATACTGAGATTCAACCGGTTTGCAACACTGCAGAGTTAAACAGAGCTCCGGGTAAAGATGGGACTGGGAGGTGGGCAAGGGCAACATTTAAGATTGTTCTTTCCTACCATGGAAATTCTTTTGATGGGTGGCAAAAGCAGCCAGAGTTGAATACTGTTCAGGGTGTGGTGGAAAAATCTCTTGGGAAATTTGTAGATGAGAAAAAAGCTCAGCAGCTGAAAGATAGATGCTTACCGATAGAAGGATGTGCTGTGGTTGCTGGGCGCACTGACAAAGGGGTGACAGCTTTGCGACAAGTTTGCTCATTCTATACTTGGCGCACAGATGTTAAACCTCAAGACATTGAAGGTTCCATCAATAATGCAGCTCCGGGAAAACTCAGAGTCTTATCTGTTTCTCAGGTGTCTCGTATGTTCCATCCAAACTTCTCTGCTAAATGGAGGCGATATCTGTATATTTTTCCTCTGAAAGATGGAGAGAACATGGAGCCAAATTTTGCAATTTGGGAAGATGTAGAAAACATTAGAGAAGAGGAACATCGTGATAAAATAGAAGCTTTACATGGTGAATGCAAGGATGAGATCCTGAATAATTTGGTCCTCAGTCAGGATGATGAGGAGCCTGCATCAGCTAATAAGCCTCAAACATTTAGTATAATGAGGGTTAACCAACTACTAAGGAAACTAGAAGGAAAGTTATTGTCATACAAGATGTTTGCACGTGACACCAAAGCATCTAGAAACGAAGGTCCACCTACGGAGTGTTTTGTATACCATGCCCGCGCAATGGAAGCTAGATTACCATGCTTGGACCAAGGCGTAGGAAGAAGTGTTATGTGTGTTGAGCTGGTTGCTAATCGCTTCTTGAGGAAGATGGTGCGGGTGCTTGTTGCAACAGCAATTAGAGAGGCAGCTGCGGGTGCTGGAGAGGATGCGTTACTAAAGCTGATGGATGCCACATGTCGACGTGCCACTGCACCTCCTGCGCCTCCTGATGGCCTCAGTCTCGTTGATGTAGGTTATACAGAATTTGATCCACAAAATTGCTTCATATTAAATGACTAA

Protein sequence

MDRCLFGDSRLGFLFYVDLFFFLFFGGGGSHTLMGSAILGFFRLDEYGLALLHLLDCTTWIYNIVPAAPAAATAKYSRPLRLGGAVVMIPNPRAILLSSSGAGFGFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQFMYERPWQEVLDFYSHAVNGRLSLSSLGTETVRDHDDTEIQPVCNTAELNRAPGKDGTGRWARATFKIVLSYHGNSFDGWQKQPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTWRTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGENMEPNFAIWEDVENIREEEHRDKIEALHGECKDEILNNLVLSQDDEEPASANKPQTFSIMRVNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPCLDQGVGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPAPPDGLSLVDVGYTEFDPQNCFILND

Homology

[Close]

BLAST of CmoCh11G003350 vs. ExPASy Swiss-Prot
Match: Q73KE3 (tRNA pseudouridine synthase A OS=Treponema denticola (strain ATCC 35405 / DSM 14222 / CIP 103919 / JCM 8153 / KCTC 15104) OX=243275 GN=truA PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 8.3e-14
Identity = 80/318 (25.16%), Postives = 126/318 (39.62%), Query Frame = 0


Query: 210 IVLSYHGNSFDGWQKQPE-----LNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVV 269
           + +SY G +F GWQKQ +       TVQG +EK+L K               PIE     
Sbjct: 12  LTISYDGTNFCGWQKQTKEGAETFRTVQGELEKALTKIHKH-----------PIETNG-- 71

Query: 270 AGRTDKGVTALRQVCSFYTWRTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAK 329
           +GRTD GV A RQ  +F+     ++  +   ++N+  P  +RV+  ++VS + H  F+A 
Sbjct: 72  SGRTDSGVHAARQAVNFFCDIKSMRASNFLPALNSILPKDIRVMDAAEVSPLLHARFNAL 131

Query: 330 WRRYLYIFPLKDGENMEPNFAIWEDVENIREEEHRDKIEALHGECKDEILNNLVLSQDDE 389
            R Y Y   +K G+ +   FA                                      E
Sbjct: 132 SRTYRY--KIKCGKTI---FA-------------------------------------HE 191

Query: 390 EPASANKPQTFSIMRVNQLLRKLEGKL-LSYKMFARDTKASRNEGPPTECFVYHARAMEA 449
           +P + +  +   I  +N++   L G+L  +    A D   S++       F         
Sbjct: 192 QPYTWHIRRYPDIAALNEMASCLSGELDCTAFSAAGDQSISKSRYIKKAVFF-------- 251

Query: 450 RLPCLDQGVGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRAT 509
                   +    +  E+ AN FL KMVR +V T +     GA +     ++++  R   
Sbjct: 252 --------IENDYLIFEICANAFLWKMVRSIVGTLLHLDEIGASKKDFKDILESKMREKA 258

Query: 510 APPAPPDGLSLVDVGYTE 522
            P APP GL L  + Y E
Sbjct: 312 GPTAPPQGLFLWSIEYPE 258

[Close]

BLAST of CmoCh11G003350 vs. ExPASy Swiss-Prot
Match: B3WAI6 (tRNA pseudouridine synthase A OS=Lactobacillus casei (strain BL23) OX=543734 GN=truA PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-13
Identity = 44/123 (35.77%), Postives = 70/123 (56.91%), Query Frame = 0


Query: 208 FKIVLSYHGNSFDGWQKQPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGR 267
           +K+ L+Y G +F G+Q QP+  TVQGV++K+L K          K + + ++G    +GR
Sbjct: 4   YKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMT--------KGQPVHVDG----SGR 63

Query: 268 TDKGVTALRQVCSFYTWRTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRR 327
           TD GV AL QV SF  +  ++  + +  ++N+  P  + +L    V   FH  +SAK +R
Sbjct: 64  TDSGVHALGQVISF-DYPGNIPAESMLKAMNSLMPLDIEILKAEIVDADFHARYSAKGKR 113

Query: 328 YLY 331
           YLY
Sbjct: 124 YLY 113

[Close]

BLAST of CmoCh11G003350 vs. ExPASy Swiss-Prot
Match: Q035B5 (tRNA pseudouridine synthase A OS=Lactobacillus paracasei (strain ATCC 334 / BCRC 17002 / CIP 107868 / KCTC 3260 / NRRL B-441) OX=321967 GN=truA PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-13
Identity = 44/123 (35.77%), Postives = 70/123 (56.91%), Query Frame = 0


Query: 208 FKIVLSYHGNSFDGWQKQPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGR 267
           +K+ L+Y G +F G+Q QP+  TVQGV++K+L K          K + + ++G    +GR
Sbjct: 4   YKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMT--------KGQPVHVDG----SGR 63

Query: 268 TDKGVTALRQVCSFYTWRTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRR 327
           TD GV AL QV SF  +  ++  + +  ++N+  P  + +L    V   FH  +SAK +R
Sbjct: 64  TDSGVHALGQVISF-DYPGNIPAESMLKAMNSLMPLDIEILKAEIVDADFHARYSAKGKR 113

Query: 328 YLY 331
           YLY
Sbjct: 124 YLY 113

[Close]

BLAST of CmoCh11G003350 vs. ExPASy Swiss-Prot
Match: C0QZT8 (tRNA pseudouridine synthase A OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) OX=565034 GN=truA PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 9.2e-13
Identity = 45/123 (36.59%), Postives = 62/123 (50.41%), Query Frame = 0


Query: 209 KIVLSYHGNSFDGWQKQPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRT 268
           KI + Y G  F GWQ QP L TVQG + K++ K   EK         + I GC    GRT
Sbjct: 5   KITIQYDGTDFYGWQIQPNLRTVQGEIYKAVQKVYGEK---------ITIYGC----GRT 64

Query: 269 DKGVTALRQVCSFYTWRTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRY 328
           D GV AL QV +F   +  V    +  ++N+     LR++   ++   F+   SA +R Y
Sbjct: 65  DAGVHALGQVANFRVPKMLVPINKVHIALNSYLDRDLRIIKAEEMPDSFNARASATFREY 114

Query: 329 LYI 332
           LYI
Sbjct: 125 LYI 114

[Close]

BLAST of CmoCh11G003350 vs. ExPASy Swiss-Prot
Match: B3E0A0 (tRNA pseudouridine synthase A OS=Methylacidiphilum infernorum (isolate V4) OX=481448 GN=truA PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 9.2e-13
Identity = 46/124 (37.10%), Postives = 67/124 (54.03%), Query Frame = 0


Query: 208 FKIVLSYHGNSFDGWQKQPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGR 267
           +K+ LSY G+ F GWQ+Q EL TVQ  +E+++ K  +E          +P+EG    AGR
Sbjct: 8   YKLTLSYCGSGFHGWQRQGELPTVQRALEEAVAKIWEEP---------IPVEG----AGR 67

Query: 268 TDKGVTALRQVCSFYTWRTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRR 327
           TD GV A  QV SF   R  ++P+ ++ ++N   P  +RV     V R F   F A  + 
Sbjct: 68  TDAGVHAKGQVASFAAPR-KLEPEVLKRALNYHLPDTVRVWDARIVPREFSARFDAVSKT 117

Query: 328 YLYI 332
           Y Y+
Sbjct: 128 YQYL 117

[Close]

BLAST of CmoCh11G003350 vs. ExPASy TrEMBL
Match: A0A6J1L1W3 (tRNA pseudouridine synthase OS=Cucurbita maxima OX=3661 GN=LOC111499102 PE=3 SV=1)

HSP 1 Score: 935.6 bits (2417), Expect = 8.9e-269
Identity = 463/488 (94.88%), Postives = 469/488 (96.11%), Query Frame = 0


Query: 49  LALLHLLDCTTWIYNIVPAAPAAATAKYSRPLRLGGAVVMIPNPRAILLSSSGA----GF 108
           L+ + L   +TWIY IVPAAPAAATAKY RPLRLGGAVVM+PNPRA LLS SGA    GF
Sbjct: 4   LSYICLTATSTWIYIIVPAAPAAATAKYCRPLRLGGAVVMLPNPRARLLSPSGAGFGFGF 63

Query: 109 GFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQFMYERPWQEVLDFYSHAVNGRL 168
           GFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQ MYERPWQEVLDFYSHAVNGRL
Sbjct: 64  GFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQLMYERPWQEVLDFYSHAVNGRL 123

Query: 169 SLSSLGTETVRDHDDTEIQPVCNTAELNRAPGKDGTGRWARATFKIVLSYHGNSFDGWQK 228
           SLSSL TETVRDHDDTEIQPVCNTAELNRAP KDGTGRWARATFKIVLSYHGNSFDGWQK
Sbjct: 124 SLSSLRTETVRDHDDTEIQPVCNTAELNRAPVKDGTGRWARATFKIVLSYHGNSFDGWQK 183

Query: 229 QPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTW 288
           QPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTW
Sbjct: 184 QPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTW 243

Query: 289 RTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGENMEPNF 348
           RTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGENMEPNF
Sbjct: 244 RTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGENMEPNF 303

Query: 349 AIWEDVENIREEEHRDKIEALHGECKDEILNNLVLSQDDEEPASANKPQTFSIMRVNQLL 408
           AI EDVEN REEE+RDKIE LHGECKDEILNNL+LSQDDEEPASANKPQTFSIMRVNQLL
Sbjct: 304 AILEDVENSREEEYRDKIEVLHGECKDEILNNLILSQDDEEPASANKPQTFSIMRVNQLL 363

Query: 409 RKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPCLDQGVGRSVMCVELVAN 468
           RKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPCLDQGVGRSVMCVELVAN
Sbjct: 364 RKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPCLDQGVGRSVMCVELVAN 423

Query: 469 RFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPAPPDGLSLVDVGYTEFDP 528
           RFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPAPPDGLSLVDVGYTEFDP
Sbjct: 424 RFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPAPPDGLSLVDVGYTEFDP 483

Query: 529 QNCFILND 533
           QNCFILND
Sbjct: 484 QNCFILND 491

[Close]

BLAST of CmoCh11G003350 vs. ExPASy TrEMBL
Match: A0A6J1EZC2 (tRNA pseudouridine synthase OS=Cucurbita moschata OX=3662 GN=LOC111440432 PE=3 SV=1)

HSP 1 Score: 915.2 bits (2364), Expect = 1.2e-262
Identity = 445/445 (100.00%), Postives = 445/445 (100.00%), Query Frame = 0


Query: 88  MIPNPRAILLSSSGAGFGFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQFMYER 147
           MIPNPRAILLSSSGAGFGFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQFMYER
Sbjct: 1   MIPNPRAILLSSSGAGFGFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQFMYER 60

Query: 148 PWQEVLDFYSHAVNGRLSLSSLGTETVRDHDDTEIQPVCNTAELNRAPGKDGTGRWARAT 207
           PWQEVLDFYSHAVNGRLSLSSLGTETVRDHDDTEIQPVCNTAELNRAPGKDGTGRWARAT
Sbjct: 61  PWQEVLDFYSHAVNGRLSLSSLGTETVRDHDDTEIQPVCNTAELNRAPGKDGTGRWARAT 120

Query: 208 FKIVLSYHGNSFDGWQKQPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGR 267
           FKIVLSYHGNSFDGWQKQPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGR
Sbjct: 121 FKIVLSYHGNSFDGWQKQPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGR 180

Query: 268 TDKGVTALRQVCSFYTWRTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRR 327
           TDKGVTALRQVCSFYTWRTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRR
Sbjct: 181 TDKGVTALRQVCSFYTWRTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRR 240

Query: 328 YLYIFPLKDGENMEPNFAIWEDVENIREEEHRDKIEALHGECKDEILNNLVLSQDDEEPA 387
           YLYIFPLKDGENMEPNFAIWEDVENIREEEHRDKIEALHGECKDEILNNLVLSQDDEEPA
Sbjct: 241 YLYIFPLKDGENMEPNFAIWEDVENIREEEHRDKIEALHGECKDEILNNLVLSQDDEEPA 300

Query: 388 SANKPQTFSIMRVNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPC 447
           SANKPQTFSIMRVNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPC
Sbjct: 301 SANKPQTFSIMRVNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPC 360

Query: 448 LDQGVGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPA 507
           LDQGVGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPA
Sbjct: 361 LDQGVGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPA 420

Query: 508 PPDGLSLVDVGYTEFDPQNCFILND 533
           PPDGLSLVDVGYTEFDPQNCFILND
Sbjct: 421 PPDGLSLVDVGYTEFDPQNCFILND 445

[Close]

BLAST of CmoCh11G003350 vs. ExPASy TrEMBL
Match: A0A6J1L1X2 (tRNA pseudouridine synthase OS=Cucurbita maxima OX=3661 GN=LOC111499102 PE=3 SV=1)

HSP 1 Score: 900.2 bits (2325), Expect = 4.1e-258
Identity = 449/478 (93.93%), Postives = 455/478 (95.19%), Query Frame = 0


Query: 49  LALLHLLDCTTWIYNIVPAAPAAATAKYSRPLRLGGAVVMIPNPRAILLSSSGA----GF 108
           L+ + L   +TWIY IVPAAPAAATAKY RPLRLGGAVVM+PNPRA LLS SGA    GF
Sbjct: 4   LSYICLTATSTWIYIIVPAAPAAATAKYCRPLRLGGAVVMLPNPRARLLSPSGAGFGFGF 63

Query: 109 GFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQFMYERPWQEVLDFYSHAVNGRL 168
           GFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQ MYERPWQEVLDFYSHAVNGRL
Sbjct: 64  GFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQLMYERPWQEVLDFYSHAVNGRL 123

Query: 169 SLSSLGTETVRDHDDTEIQPVCNTAELNRAPGKDGTGRWARATFKIVLSYHGNSFDGWQK 228
           SLSSL TETVRDHDDTEIQPVCNTAELNRAP KDGTGRWARATFKIVLSYHGNSFDGWQK
Sbjct: 124 SLSSLRTETVRDHDDTEIQPVCNTAELNRAPVKDGTGRWARATFKIVLSYHGNSFDGWQK 183

Query: 229 QPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTW 288
           QPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTW
Sbjct: 184 QPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTW 243

Query: 289 RTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGENMEPNF 348
           RTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGENMEPNF
Sbjct: 244 RTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGENMEPNF 303

Query: 349 AIWEDVENIREEEHRDKIEALHGECKDEILNNLVLSQDDEEPASANKPQTFSIMRVNQLL 408
           AI EDVEN REEE+RDKIE LHGECKDEILNNL+LSQDDEEPASANKPQTFSIMRVNQLL
Sbjct: 304 AILEDVENSREEEYRDKIEVLHGECKDEILNNLILSQDDEEPASANKPQTFSIMRVNQLL 363

Query: 409 RKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPCLDQGVGRSVMCVELVAN 468
           RKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPCLDQGVGRSVMCVELVAN
Sbjct: 364 RKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPCLDQGVGRSVMCVELVAN 423

Query: 469 RFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPAPPDGLSLVDVGYTEF 523
           RFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPAPPDGLSLVD    EF
Sbjct: 424 RFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPAPPDGLSLVDKVGWEF 481

[Close]

BLAST of CmoCh11G003350 vs. ExPASy TrEMBL
Match: A0A6J1L1X8 (tRNA pseudouridine synthase OS=Cucurbita maxima OX=3661 GN=LOC111499102 PE=3 SV=1)

HSP 1 Score: 899.4 bits (2323), Expect = 7.0e-258
Identity = 447/472 (94.70%), Postives = 453/472 (95.97%), Query Frame = 0


Query: 49  LALLHLLDCTTWIYNIVPAAPAAATAKYSRPLRLGGAVVMIPNPRAILLSSSGA----GF 108
           L+ + L   +TWIY IVPAAPAAATAKY RPLRLGGAVVM+PNPRA LLS SGA    GF
Sbjct: 4   LSYICLTATSTWIYIIVPAAPAAATAKYCRPLRLGGAVVMLPNPRARLLSPSGAGFGFGF 63

Query: 109 GFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQFMYERPWQEVLDFYSHAVNGRL 168
           GFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQ MYERPWQEVLDFYSHAVNGRL
Sbjct: 64  GFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQLMYERPWQEVLDFYSHAVNGRL 123

Query: 169 SLSSLGTETVRDHDDTEIQPVCNTAELNRAPGKDGTGRWARATFKIVLSYHGNSFDGWQK 228
           SLSSL TETVRDHDDTEIQPVCNTAELNRAP KDGTGRWARATFKIVLSYHGNSFDGWQK
Sbjct: 124 SLSSLRTETVRDHDDTEIQPVCNTAELNRAPVKDGTGRWARATFKIVLSYHGNSFDGWQK 183

Query: 229 QPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTW 288
           QPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTW
Sbjct: 184 QPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTW 243

Query: 289 RTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGENMEPNF 348
           RTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGENMEPNF
Sbjct: 244 RTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGENMEPNF 303

Query: 349 AIWEDVENIREEEHRDKIEALHGECKDEILNNLVLSQDDEEPASANKPQTFSIMRVNQLL 408
           AI EDVEN REEE+RDKIE LHGECKDEILNNL+LSQDDEEPASANKPQTFSIMRVNQLL
Sbjct: 304 AILEDVENSREEEYRDKIEVLHGECKDEILNNLILSQDDEEPASANKPQTFSIMRVNQLL 363

Query: 409 RKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPCLDQGVGRSVMCVELVAN 468
           RKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPCLDQGVGRSVMCVELVAN
Sbjct: 364 RKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPCLDQGVGRSVMCVELVAN 423

Query: 469 RFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPAPPDGLSLVD 517
           RFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPAPPDGLSLVD
Sbjct: 424 RFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPAPPDGLSLVD 475

[Close]

BLAST of CmoCh11G003350 vs. ExPASy TrEMBL
Match: A0A6J1KZX4 (uncharacterized protein LOC111499102 isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111499102 PE=4 SV=1)

HSP 1 Score: 899.4 bits (2323), Expect = 7.0e-258
Identity = 447/472 (94.70%), Postives = 453/472 (95.97%), Query Frame = 0


Query: 49  LALLHLLDCTTWIYNIVPAAPAAATAKYSRPLRLGGAVVMIPNPRAILLSSSGA----GF 108
           L+ + L   +TWIY IVPAAPAAATAKY RPLRLGGAVVM+PNPRA LLS SGA    GF
Sbjct: 4   LSYICLTATSTWIYIIVPAAPAAATAKYCRPLRLGGAVVMLPNPRARLLSPSGAGFGFGF 63

Query: 109 GFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQFMYERPWQEVLDFYSHAVNGRL 168
           GFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQ MYERPWQEVLDFYSHAVNGRL
Sbjct: 64  GFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQLMYERPWQEVLDFYSHAVNGRL 123

Query: 169 SLSSLGTETVRDHDDTEIQPVCNTAELNRAPGKDGTGRWARATFKIVLSYHGNSFDGWQK 228
           SLSSL TETVRDHDDTEIQPVCNTAELNRAP KDGTGRWARATFKIVLSYHGNSFDGWQK
Sbjct: 124 SLSSLRTETVRDHDDTEIQPVCNTAELNRAPVKDGTGRWARATFKIVLSYHGNSFDGWQK 183

Query: 229 QPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTW 288
           QPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTW
Sbjct: 184 QPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTW 243

Query: 289 RTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGENMEPNF 348
           RTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGENMEPNF
Sbjct: 244 RTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGENMEPNF 303

Query: 349 AIWEDVENIREEEHRDKIEALHGECKDEILNNLVLSQDDEEPASANKPQTFSIMRVNQLL 408
           AI EDVEN REEE+RDKIE LHGECKDEILNNL+LSQDDEEPASANKPQTFSIMRVNQLL
Sbjct: 304 AILEDVENSREEEYRDKIEVLHGECKDEILNNLILSQDDEEPASANKPQTFSIMRVNQLL 363

Query: 409 RKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPCLDQGVGRSVMCVELVAN 468
           RKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPCLDQGVGRSVMCVELVAN
Sbjct: 364 RKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPCLDQGVGRSVMCVELVAN 423

Query: 469 RFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPAPPDGLSLVD 517
           RFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPAPPDGLSLVD
Sbjct: 424 RFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPAPPDGLSLVD 475

[Close]

BLAST of CmoCh11G003350 vs. NCBI nr
Match: KAG7021669.1 (truA, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 955.7 bits (2469), Expect = 1.7e-274
Identity = 469/484 (96.90%), Postives = 474/484 (97.93%), Query Frame = 0


Query: 49  LALLHLLDCTTWIYNIVPAAPAAATAKYSRPLRLGGAVVMIPNPRAILLSSSGAGFGFGI 108
           L+ + L   +TWIY IVPAAPAAATAKYSRPLRLGGAVVMIPNPRAILLSSSGAGFGFGI
Sbjct: 4   LSYICLTATSTWIYIIVPAAPAAATAKYSRPLRLGGAVVMIPNPRAILLSSSGAGFGFGI 63

Query: 109 KCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQFMYERPWQEVLDFYSHAVNGRLSLSS 168
           KCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQFMYERPWQEVLDFYSHAVNGRLSLSS
Sbjct: 64  KCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQFMYERPWQEVLDFYSHAVNGRLSLSS 123

Query: 169 LGTETVRDHDDTEIQPVCNTAELNRAPGKDGTGRWARATFKIVLSYHGNSFDGWQKQPEL 228
           LGTETVRDHDDTEIQPVCNTAEL+RAP KDGTGRWARATFKIVLSYHGNSFDGWQKQP+L
Sbjct: 124 LGTETVRDHDDTEIQPVCNTAELDRAPVKDGTGRWARATFKIVLSYHGNSFDGWQKQPDL 183

Query: 229 NTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTWRTDV 288
           NTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTWRTDV
Sbjct: 184 NTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTWRTDV 243

Query: 289 KPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGENMEPNFAIWE 348
           KPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGE MEPNFAIWE
Sbjct: 244 KPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGEKMEPNFAIWE 303

Query: 349 DVENIREEEHRDKIEALHGECKDEILNNLVLSQDDEEPASANKPQTFSIMRVNQLLRKLE 408
           DVEN REEEHRDKIEALHGECKDEILNNLVLSQDDEEPA ANKPQTFSIMRVNQLLRKLE
Sbjct: 304 DVENSREEEHRDKIEALHGECKDEILNNLVLSQDDEEPALANKPQTFSIMRVNQLLRKLE 363

Query: 409 GKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPCLDQGVGRSVMCVELVANRFLR 468
           GKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPCLDQGVGRSVMCVELVANRFLR
Sbjct: 364 GKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPCLDQGVGRSVMCVELVANRFLR 423

Query: 469 KMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPAPPDGLSLVDVGYTEFDPQNCF 528
           KMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPAPPDGLSLVDVGYTEFDPQNCF
Sbjct: 424 KMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPAPPDGLSLVDVGYTEFDPQNCF 483

Query: 529 ILND 533
           ILND
Sbjct: 484 ILND 487

[Close]

BLAST of CmoCh11G003350 vs. NCBI nr
Match: XP_023006334.1 (uncharacterized protein LOC111499102 isoform X1 [Cucurbita maxima])

HSP 1 Score: 935.6 bits (2417), Expect = 1.8e-268
Identity = 463/488 (94.88%), Postives = 469/488 (96.11%), Query Frame = 0


Query: 49  LALLHLLDCTTWIYNIVPAAPAAATAKYSRPLRLGGAVVMIPNPRAILLSSSGA----GF 108
           L+ + L   +TWIY IVPAAPAAATAKY RPLRLGGAVVM+PNPRA LLS SGA    GF
Sbjct: 4   LSYICLTATSTWIYIIVPAAPAAATAKYCRPLRLGGAVVMLPNPRARLLSPSGAGFGFGF 63

Query: 109 GFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQFMYERPWQEVLDFYSHAVNGRL 168
           GFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQ MYERPWQEVLDFYSHAVNGRL
Sbjct: 64  GFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQLMYERPWQEVLDFYSHAVNGRL 123

Query: 169 SLSSLGTETVRDHDDTEIQPVCNTAELNRAPGKDGTGRWARATFKIVLSYHGNSFDGWQK 228
           SLSSL TETVRDHDDTEIQPVCNTAELNRAP KDGTGRWARATFKIVLSYHGNSFDGWQK
Sbjct: 124 SLSSLRTETVRDHDDTEIQPVCNTAELNRAPVKDGTGRWARATFKIVLSYHGNSFDGWQK 183

Query: 229 QPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTW 288
           QPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTW
Sbjct: 184 QPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTW 243

Query: 289 RTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGENMEPNF 348
           RTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGENMEPNF
Sbjct: 244 RTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGENMEPNF 303

Query: 349 AIWEDVENIREEEHRDKIEALHGECKDEILNNLVLSQDDEEPASANKPQTFSIMRVNQLL 408
           AI EDVEN REEE+RDKIE LHGECKDEILNNL+LSQDDEEPASANKPQTFSIMRVNQLL
Sbjct: 304 AILEDVENSREEEYRDKIEVLHGECKDEILNNLILSQDDEEPASANKPQTFSIMRVNQLL 363

Query: 409 RKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPCLDQGVGRSVMCVELVAN 468
           RKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPCLDQGVGRSVMCVELVAN
Sbjct: 364 RKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPCLDQGVGRSVMCVELVAN 423

Query: 469 RFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPAPPDGLSLVDVGYTEFDP 528
           RFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPAPPDGLSLVDVGYTEFDP
Sbjct: 424 RFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPAPPDGLSLVDVGYTEFDP 483

Query: 529 QNCFILND 533
           QNCFILND
Sbjct: 484 QNCFILND 491

[Close]

BLAST of CmoCh11G003350 vs. NCBI nr
Match: XP_022933289.1 (uncharacterized protein LOC111440432 isoform X1 [Cucurbita moschata])

HSP 1 Score: 915.2 bits (2364), Expect = 2.6e-262
Identity = 445/445 (100.00%), Postives = 445/445 (100.00%), Query Frame = 0


Query: 88  MIPNPRAILLSSSGAGFGFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQFMYER 147
           MIPNPRAILLSSSGAGFGFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQFMYER
Sbjct: 1   MIPNPRAILLSSSGAGFGFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQFMYER 60

Query: 148 PWQEVLDFYSHAVNGRLSLSSLGTETVRDHDDTEIQPVCNTAELNRAPGKDGTGRWARAT 207
           PWQEVLDFYSHAVNGRLSLSSLGTETVRDHDDTEIQPVCNTAELNRAPGKDGTGRWARAT
Sbjct: 61  PWQEVLDFYSHAVNGRLSLSSLGTETVRDHDDTEIQPVCNTAELNRAPGKDGTGRWARAT 120

Query: 208 FKIVLSYHGNSFDGWQKQPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGR 267
           FKIVLSYHGNSFDGWQKQPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGR
Sbjct: 121 FKIVLSYHGNSFDGWQKQPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGR 180

Query: 268 TDKGVTALRQVCSFYTWRTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRR 327
           TDKGVTALRQVCSFYTWRTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRR
Sbjct: 181 TDKGVTALRQVCSFYTWRTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRR 240

Query: 328 YLYIFPLKDGENMEPNFAIWEDVENIREEEHRDKIEALHGECKDEILNNLVLSQDDEEPA 387
           YLYIFPLKDGENMEPNFAIWEDVENIREEEHRDKIEALHGECKDEILNNLVLSQDDEEPA
Sbjct: 241 YLYIFPLKDGENMEPNFAIWEDVENIREEEHRDKIEALHGECKDEILNNLVLSQDDEEPA 300

Query: 388 SANKPQTFSIMRVNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPC 447
           SANKPQTFSIMRVNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPC
Sbjct: 301 SANKPQTFSIMRVNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPC 360

Query: 448 LDQGVGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPA 507
           LDQGVGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPA
Sbjct: 361 LDQGVGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPA 420

Query: 508 PPDGLSLVDVGYTEFDPQNCFILND 533
           PPDGLSLVDVGYTEFDPQNCFILND
Sbjct: 421 PPDGLSLVDVGYTEFDPQNCFILND 445

[Close]

BLAST of CmoCh11G003350 vs. NCBI nr
Match: XP_023006344.1 (uncharacterized protein LOC111499102 isoform X2 [Cucurbita maxima])

HSP 1 Score: 900.2 bits (2325), Expect = 8.5e-258
Identity = 449/478 (93.93%), Postives = 455/478 (95.19%), Query Frame = 0


Query: 49  LALLHLLDCTTWIYNIVPAAPAAATAKYSRPLRLGGAVVMIPNPRAILLSSSGA----GF 108
           L+ + L   +TWIY IVPAAPAAATAKY RPLRLGGAVVM+PNPRA LLS SGA    GF
Sbjct: 4   LSYICLTATSTWIYIIVPAAPAAATAKYCRPLRLGGAVVMLPNPRARLLSPSGAGFGFGF 63

Query: 109 GFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQFMYERPWQEVLDFYSHAVNGRL 168
           GFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQ MYERPWQEVLDFYSHAVNGRL
Sbjct: 64  GFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQLMYERPWQEVLDFYSHAVNGRL 123

Query: 169 SLSSLGTETVRDHDDTEIQPVCNTAELNRAPGKDGTGRWARATFKIVLSYHGNSFDGWQK 228
           SLSSL TETVRDHDDTEIQPVCNTAELNRAP KDGTGRWARATFKIVLSYHGNSFDGWQK
Sbjct: 124 SLSSLRTETVRDHDDTEIQPVCNTAELNRAPVKDGTGRWARATFKIVLSYHGNSFDGWQK 183

Query: 229 QPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTW 288
           QPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTW
Sbjct: 184 QPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTW 243

Query: 289 RTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGENMEPNF 348
           RTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGENMEPNF
Sbjct: 244 RTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGENMEPNF 303

Query: 349 AIWEDVENIREEEHRDKIEALHGECKDEILNNLVLSQDDEEPASANKPQTFSIMRVNQLL 408
           AI EDVEN REEE+RDKIE LHGECKDEILNNL+LSQDDEEPASANKPQTFSIMRVNQLL
Sbjct: 304 AILEDVENSREEEYRDKIEVLHGECKDEILNNLILSQDDEEPASANKPQTFSIMRVNQLL 363

Query: 409 RKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPCLDQGVGRSVMCVELVAN 468
           RKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPCLDQGVGRSVMCVELVAN
Sbjct: 364 RKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPCLDQGVGRSVMCVELVAN 423

Query: 469 RFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPAPPDGLSLVDVGYTEF 523
           RFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPAPPDGLSLVD    EF
Sbjct: 424 RFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPAPPDGLSLVDKVGWEF 481

[Close]

BLAST of CmoCh11G003350 vs. NCBI nr
Match: XP_023006365.1 (uncharacterized protein LOC111499102 isoform X4 [Cucurbita maxima])

HSP 1 Score: 899.4 bits (2323), Expect = 1.5e-257
Identity = 447/472 (94.70%), Postives = 453/472 (95.97%), Query Frame = 0


Query: 49  LALLHLLDCTTWIYNIVPAAPAAATAKYSRPLRLGGAVVMIPNPRAILLSSSGA----GF 108
           L+ + L   +TWIY IVPAAPAAATAKY RPLRLGGAVVM+PNPRA LLS SGA    GF
Sbjct: 4   LSYICLTATSTWIYIIVPAAPAAATAKYCRPLRLGGAVVMLPNPRARLLSPSGAGFGFGF 63

Query: 109 GFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQFMYERPWQEVLDFYSHAVNGRL 168
           GFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQ MYERPWQEVLDFYSHAVNGRL
Sbjct: 64  GFGIKCLMENRAQKKDYLHYNHTDRCRNARWTSRESYQLMYERPWQEVLDFYSHAVNGRL 123

Query: 169 SLSSLGTETVRDHDDTEIQPVCNTAELNRAPGKDGTGRWARATFKIVLSYHGNSFDGWQK 228
           SLSSL TETVRDHDDTEIQPVCNTAELNRAP KDGTGRWARATFKIVLSYHGNSFDGWQK
Sbjct: 124 SLSSLRTETVRDHDDTEIQPVCNTAELNRAPVKDGTGRWARATFKIVLSYHGNSFDGWQK 183

Query: 229 QPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTW 288
           QPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTW
Sbjct: 184 QPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTW 243

Query: 289 RTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGENMEPNF 348
           RTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGENMEPNF
Sbjct: 244 RTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGENMEPNF 303

Query: 349 AIWEDVENIREEEHRDKIEALHGECKDEILNNLVLSQDDEEPASANKPQTFSIMRVNQLL 408
           AI EDVEN REEE+RDKIE LHGECKDEILNNL+LSQDDEEPASANKPQTFSIMRVNQLL
Sbjct: 304 AILEDVENSREEEYRDKIEVLHGECKDEILNNLILSQDDEEPASANKPQTFSIMRVNQLL 363

Query: 409 RKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPCLDQGVGRSVMCVELVAN 468
           RKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPCLDQGVGRSVMCVELVAN
Sbjct: 364 RKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPCLDQGVGRSVMCVELVAN 423

Query: 469 RFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPAPPDGLSLVD 517
           RFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPAPPDGLSLVD
Sbjct: 424 RFLRKMVRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPAPPDGLSLVD 475

[Close]

BLAST of CmoCh11G003350 vs. TAIR 10
Match: AT5G35400.1 (Pseudouridine synthase family protein )

HSP 1 Score: 499.6 bits (1285), Expect = 3.1e-141
Identity = 259/419 (61.81%), Postives = 317/419 (75.66%), Query Frame = 0


Query: 121 YLHYNHTDRCRNARWTSRESYQFMYERPWQEVLDFYSHAVNGRLSLSSL-GTETVRDHDD 180
           Y+HY+H D C  ARW +RE+++FMY+RPWQ VLDFYS+AV G LS+ SL   +    HDD
Sbjct: 6   YVHYHHADACSKARWNARETFRFMYDRPWQHVLDFYSNAVEGNLSVLSLFQPKKSLVHDD 65

Query: 181 TEIQPVCNTAELNRAPGKDG-TGRWARATFKIVLSYHGNSFDGWQKQPELNTVQGVVEKS 240
              + +   +E   +  KDG +GRW R  FKIVLSY+G SFDGWQKQP+L+TVQGVVEKS
Sbjct: 66  GITEEMLLESEPETSTRKDGRSGRWERVNFKIVLSYNGASFDGWQKQPDLHTVQGVVEKS 125

Query: 241 LGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTWRTDVKPQDIEGSIN 300
           LG FVDE+KAQ LK +C P+EG  +VAGRTDKGV+AL QVCSFYTWR D++P  IE +IN
Sbjct: 126 LGGFVDERKAQLLKKKCKPLEGRVLVAGRTDKGVSALNQVCSFYTWRKDIEPIAIEDAIN 185

Query: 301 NAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGENMEPNFAIWEDVENIREEEH 360
             A GKLRV+S+S+VSR FHPNFSAKWRRYLYIFPL D E +  +    E+ EN   +E+
Sbjct: 186 KDASGKLRVVSISKVSRSFHPNFSAKWRRYLYIFPLDDAEPLRKS---GENHENFIFDEN 245

Query: 361 RDKIEALHGECKDEILNNLVLSQDD----EEPASA----NKPQTFSIMRVNQLLRKLEGK 420
           + K    +G   +EI   +++S+DD    EE ++A     KP  FS+ +V+QLL+ L+GK
Sbjct: 246 KKK--QRNGLLSEEIAEEVIMSEDDELEIEETSNALEVVEKPSDFSVSKVDQLLQHLQGK 305

Query: 421 LLSYKMFARDTKASRNEGPPTECFVYHARAMEARLPCLDQGVGRSVMCVELVANRFLRKM 480
           +LSYKMFARDTKA+RNEGPPTECF+YHARA E RL   D   GR VMCVELVANRFLRKM
Sbjct: 306 VLSYKMFARDTKAARNEGPPTECFMYHARAAEIRLSSSDCVEGRRVMCVELVANRFLRKM 365

Query: 481 VRVLVATAIREAAAGAGEDALLKLMDATCRRATAPPAPPDGLSLVDVGYTEFDPQNCFI 530
           VRVLVAT+IREAAAGA +DALLKL++A+CRRATAPPAP +GL L DVGYT+FDPQ   I
Sbjct: 366 VRVLVATSIREAAAGAEDDALLKLLEASCRRATAPPAPSEGLCLFDVGYTDFDPQTSLI 419

[Close]

BLAST of CmoCh11G003350 vs. TAIR 10
Match: AT5G35400.2 (Pseudouridine synthase family protein )

HSP 1 Score: 476.1 bits (1224), Expect = 3.7e-134
Identity = 259/470 (55.11%), Postives = 317/470 (67.45%), Query Frame = 0


Query: 121 YLHYNHTDRCRNARWTSRESYQFMYERPWQEVLDFYSHAVNGRLSLSSL-GTETVRDHDD 180
           Y+HY+H D C  ARW +RE+++FMY+RPWQ VLDFYS+AV G LS+ SL   +    HDD
Sbjct: 6   YVHYHHADACSKARWNARETFRFMYDRPWQHVLDFYSNAVEGNLSVLSLFQPKKSLVHDD 65

Query: 181 TEIQPVCNTAELNRAPGKDG-TGRWARATFKIVLSYHGNSFDGWQKQPELNTVQGVVEKS 240
              + +   +E   +  KDG +GRW R  FKIVLSY+G SFDGWQKQP+L+TVQGVVEKS
Sbjct: 66  GITEEMLLESEPETSTRKDGRSGRWERVNFKIVLSYNGASFDGWQKQPDLHTVQGVVEKS 125

Query: 241 LGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFYTWRTDVKPQDIEGSIN 300
           LG FVDE+KAQ LK +C P+EG  +VAGRTDKGV+AL QVCSFYTWR D++P  IE +IN
Sbjct: 126 LGGFVDERKAQLLKKKCKPLEGRVLVAGRTDKGVSALNQVCSFYTWRKDIEPIAIEDAIN 185

Query: 301 NAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPLKDGENMEPNFAIWEDVENIREEEH 360
             A GKLRV+S+S+VSR FHPNFSAKWRRYLYIFPL D E +  +    E+ EN   +E+
Sbjct: 186 KDASGKLRVVSISKVSRSFHPNFSAKWRRYLYIFPLDDAEPLRKS---GENHENFIFDEN 245

Query: 361 RDKIEALHGECKDEILNNLVLSQDD----EEPASA----NKPQTFSIMRVNQLLRKLEGK 420
           + K    +G   +EI   +++S+DD    EE ++A     KP  FS+ +V+QLL+ L+GK
Sbjct: 246 KKK--QRNGLLSEEIAEEVIMSEDDELEIEETSNALEVVEKPSDFSVSKVDQLLQHLQGK 305

Query: 421 LLSYKMFARDTKASRNEGPPTECFVYHARAMEARLP------------------------ 480
           +LSYKMFARDTKA+RNEGPPTECF+YHARA E RL                         
Sbjct: 306 VLSYKMFARDTKAARNEGPPTECFMYHARAAEIRLSSSVVHFVAWVFGGSIVLVILATEG 365

Query: 481 ---------------------------CLDQGVGRSVMCVELVANRFLRKMVRVLVATAI 530
                                        D   GR VMCVELVANRFLRKMVRVLVAT+I
Sbjct: 366 STLDLTDTKLYIASWFLIKRSCEFLFIASDCVEGRRVMCVELVANRFLRKMVRVLVATSI 425

[Close]

BLAST of CmoCh11G003350 vs. TAIR 10
Match: AT3G06950.1 (Pseudouridine synthase family protein )

HSP 1 Score: 63.9 bits (154), Expect = 4.4e-10
Identity = 40/124 (32.26%), Postives = 58/124 (46.77%), Query Frame = 0


Query: 208 FKIVLSYHGNSFDGWQKQPELNTVQGVVEKSLGKFVD-EKKAQQLKDRCLPIEGCAVVAG 267
           +++V++Y G  F GWQ Q    T+Q ++EK+L +  +  +K  QL           + AG
Sbjct: 43  WRLVIAYDGTRFAGWQYQESPPTIQSMLEKALIQITELGRKELQL-----------IGAG 102

Query: 268 RTDKGVTALRQVCSFYTWRTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWR 327
           RTD GV A  QV  F T            ++N   P  +RV  +S     FH  FSA  +
Sbjct: 103 RTDAGVHAWGQVAHFVTPFNYTSLDSFHAALNGLLPKDIRVRELSAAVPEFHARFSASSK 155

Query: 328 RYLY 331
            Y Y
Sbjct: 163 VYRY 155

[Close]

BLAST of CmoCh11G003350 vs. TAIR 10
Match: AT1G20370.1 (Pseudouridine synthase family protein )

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-09
Identity = 49/172 (28.49%), Postives = 77/172 (44.77%), Query Frame = 0


Query: 163 RLSLSSLGTETVRDHDDTEIQPVCNTAELNRAPGKDGTGRWARATFKIVLSYHGNSFDGW 222
           +L +S+ G ET    D + +    +     RAP      ++ R    IV ++ G  + G 
Sbjct: 25  KLKISTTGQET----DSSAVTTGGSNVAERRAP------KYRRRKVAIVFAFCGVGYQGM 84

Query: 223 QKQPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTDKGVTALRQVCSFY 282
           QK P   T++G +E++L        A    DR  P       + RTDKGV+A+ QV S  
Sbjct: 85  QKNPGAKTIEGELEEAL----FHAGAVPDADRNKPRNYEWARSARTDKGVSAVGQVVS-- 144

Query: 283 TWRTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYLYIFPL 335
             R  V P      +N+  P ++RV    +V+  F        RRY+Y+ P+
Sbjct: 145 -GRFYVDPPGFVERLNSKLPDQIRVFGYKRVAPSFSSKKFCDRRRYVYLIPV 179

[Close]

BLAST of CmoCh11G003350 vs. TAIR 10
Match: AT1G76120.1 (Pseudouridine synthase family protein )

HSP 1 Score: 54.7 bits (130), Expect = 2.7e-07
Identity = 35/125 (28.00%), Postives = 59/125 (47.20%), Query Frame = 0


Query: 210 IVLSYHGNSFDGWQKQPELNTVQGVVEKSLGKFVDEKKAQQLKDRCLPIEGCAVVAGRTD 269
           I+ ++ G  + G QK P   T++G +E++L       ++ + K +       A    RTD
Sbjct: 26  IIFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPESIRGKPKLYDFARSA----RTD 85

Query: 270 KGVTALRQVCSFYTWRTDVKPQDIEGSINNAAPGKLRVLSVSQVSRMFHPNFSAKWRRYL 329
           KGV+A+ QV S    R  V P      +N+  P ++R+     V+  F        RRY+
Sbjct: 86  KGVSAVGQVVS---GRFIVDPLGFVNRLNSNLPNQIRIFGYKHVTPSFSSKKFCDRRRYV 143

Query: 330 YIFPL 335
           Y+ P+
Sbjct: 146 YLLPV 143

The following BLAST results are available for this feature:

BLAST of CmoCh11G003350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q73KE3	8.3e-14	25.16	tRNA pseudouridine synthase A OS=Treponema denticola (strain ATCC 35405 / DSM 14...	[more]
B3WAI6	2.4e-13	35.77	tRNA pseudouridine synthase A OS=Lactobacillus casei (strain BL23) OX=543734 GN=...	[more]
Q035B5	2.4e-13	35.77	tRNA pseudouridine synthase A OS=Lactobacillus paracasei (strain ATCC 334 / BCRC...	[more]
C0QZT8	9.2e-13	36.59	tRNA pseudouridine synthase A OS=Brachyspira hyodysenteriae (strain ATCC 49526 /...	[more]
B3E0A0	9.2e-13	37.10	tRNA pseudouridine synthase A OS=Methylacidiphilum infernorum (isolate V4) OX=48...	[more]

BLAST of CmoCh11G003350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L1W3	8.9e-269	94.88	tRNA pseudouridine synthase OS=Cucurbita maxima OX=3661 GN=LOC111499102 PE=3 SV=...	[more]
A0A6J1EZC2	1.2e-262	100.00	tRNA pseudouridine synthase OS=Cucurbita moschata OX=3662 GN=LOC111440432 PE=3 S...	[more]
A0A6J1L1X2	4.1e-258	93.93	tRNA pseudouridine synthase OS=Cucurbita maxima OX=3661 GN=LOC111499102 PE=3 SV=...	[more]
A0A6J1L1X8	7.0e-258	94.70	tRNA pseudouridine synthase OS=Cucurbita maxima OX=3661 GN=LOC111499102 PE=3 SV=...	[more]
A0A6J1KZX4	7.0e-258	94.70	uncharacterized protein LOC111499102 isoform X4 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CmoCh11G003350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021669.1	1.7e-274	96.90	truA, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023006334.1	1.8e-268	94.88	uncharacterized protein LOC111499102 isoform X1 [Cucurbita maxima]	[more]
XP_022933289.1	2.6e-262	100.00	uncharacterized protein LOC111440432 isoform X1 [Cucurbita moschata]	[more]
XP_023006344.1	8.5e-258	93.93	uncharacterized protein LOC111499102 isoform X2 [Cucurbita maxima]	[more]
XP_023006365.1	1.5e-257	94.70	uncharacterized protein LOC111499102 isoform X4 [Cucurbita maxima]	[more]

BLAST of CmoCh11G003350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35400.1	3.1e-141	61.81	Pseudouridine synthase family protein	[more]
AT5G35400.2	3.7e-134	55.11	Pseudouridine synthase family protein	[more]
AT3G06950.1	4.4e-10	32.26	Pseudouridine synthase family protein	[more]
AT1G20370.1	1.3e-09	28.49	Pseudouridine synthase family protein	[more]
AT1G76120.1	2.7e-07	28.00	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020094	Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal	GENE3D	3.30.70.580		coord: 205..323 e-value: 7.9E-25 score: 89.2
IPR020095	Pseudouridine synthase I, TruA, C-terminal	GENE3D	3.30.70.660		coord: 375..517 e-value: 4.1E-14 score: 54.5
IPR020097	Pseudouridine synthase I, TruA, alpha/beta domain	PFAM	PF01416	PseudoU_synth_1	coord: 432..519 e-value: 1.9E-6 score: 28.3
None	No IPR available	PANTHER	PTHR11142:SF10	TRNA PSEUDOURIDINE SYNTHASE	coord: 128..529
IPR001406	Pseudouridine synthase I, TruA	PANTHER	PTHR11142	PSEUDOURIDYLATE SYNTHASE	coord: 128..529
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 207..524

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G003350.1	CmoCh11G003350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031119	tRNA pseudouridine synthesis
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0106029	tRNA pseudouridine synthase activity
molecular_function	GO:0009982	pseudouridine synthase activity