CmoCh11G001150 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G001150
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionsuccinate dehydrogenase subunit 7B, mitochondrial-like
LocationCmo_Chr11: 605162 .. 608055 (-)
RNA-Seq ExpressionCmoCh11G001150
SyntenyCmoCh11G001150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGGCTGAATCCATTTCTGTTTGCAGTGAAAGAAGCCCACTTTCCCTTCAGGTTTTTACATTACCAAATTTCTCCCTCATCTCACCATCGCAGCTCTCCTCTTCCTTCTCGCATCTCCTACTCAGGAACAATGGCGTTTTTGCTCAACAAAACCGCTCTTGCCTCTCGTTTCCGATCTCAATCCCAGGTTATTTCTCCTTCGATCGCCTCTTAGCTTATTTTTTTCTTAATCGTTTTTTTTTTTTCTCTCAATCAATCTCTTGAGTTGTTTGGTTGACCAACAGGTGGATCCTTCATCACTCTCGCGCCGTGGATTCCACGTCGAGCCAGGAACTCGTGAAAAGGCTGTAAGCATGTTTTACTTTCTCCTTGTTAATTGCTATCTTTAATTGTTCGTGTAGCGGTTTATTCCATGGTTTGGGATATTAGTTCCTTGTAGCTCATCGCTGCTCCATTATGTTAATTGATATCTCATAATTATATGTTCAGTTTTTCTTGTATGGCTGGTAATCTAGTTCCTTTCGCTTTATTGTATTTGAATCTTTCGACCCTAGTGTAGATGGAAGCTTTTCGAACCTGTTCGAACTCCTGTATTTAGGTCTAGGAAATTAGAGGGGATGGGAGGTCGCCGTGCTGTTTTCTTAACTAATGTGATCCCGTGCTAATGGCCTGAAACCCTGGTTAAAAGTGATGTGTTCATAGTATTGGTGAAAATTACGGGTTTGCTTTGCATTATGTAGTATGTTCTCAAACTCAGCATGTATGATTTCCGTAGCGATACTTTCTTAAGCACTATGTTTGAAAATATTTATTCCTTGCATCACACGAAGAACATTCCTCTACACGTGGGTAAATAAATATCTATCTAATTTTTTGTTCGCCTCTGGCATTTGTGTGAGGGAATTTAGTTGCTAAGTATGTGATGCAATGAGTTTTAATATGTTGAATGTCTGCAGTTATTAGCTGAGGACCCTTCTCTAAGGCGGTTCAGATCACACAAGAAAGGTGTCTCTAGAATCAAGAAAATTGGAGATGTTCTGACCATTGTGGTTGTTGCAGGTATGAGTCTTTTTTCCATTAAATAAAATACTTTTCTCTTTGTCCAGTGGGTCCTTGCTGCTATCTGCTATTATCGCAACATTGATGTGGATGGTGTGTGGCTGAATGATCTTTTGAGTGATGTATGTCATTACGAGATTTTCATATCTTTGCAAGCTTCTTAGAAATGAGAATTGGCTTTCGGCATTTCAAACTTTCCATGCTTTTAGCCAAACCTAGTTTGTTCTTTCCTAATTTTAGGATTGTGGCAACTGCCAGATTATTATTAGTGCCTTTTAGACTTCAGTGGCATTATCCTTGGGTTCTATCCATGATACAGCTTGCTAACAACAGGTTGATTGAGACTAAGTAGCTATTTTTTTCTGTTTATTTAATTGGTGTGCCAGCTTTTCAACTTTAGTAGCTAGTATGAAAGATTTCATTTTAAGTTGATGATACTTAGTCCTAGTAATTGAATCAAGTGGTAATTACCGAGACAAGTGGCTTATTTTCTTCACAATTTCTATACTCTACAAAATGTTTGTGTAGGATGATGCACTGAGCTAACTGAGTTCATAGATGAACATTTGATCTCCCCCACAAACTTTATTTCCATGAGTAGAATTTGGGTAGGGAAGTTAATTTGTCCATTATCCAAAGGAGAAATTAAAAATTTGTAAATTTTGAGTGCTTCACATTTGCACCTGGCTATGTTATGTGAATTGGCATGATGACATGAGACATCTCTGATTTCTTGTTTTTGCCGTTTCTACGCCCCAAGTCATCTTTGGTCATTAGAAGATTCTTTTTTTTTTTGTACAATGTTACCGTCCATAACAACTTTGAACTTTGTTATAACTTAAGACAACATTCTACACCATACTTCTATCCCCAAGCATGCCAACCTCGTCTTTTCTTTGAAGAGACTATTGATCAATTTTTATGAGCTATTTTTGTACGGCAGATTGTTGGTTTCAGTTATGGAGCATGTTCAACATAAAATGATGCTTCCATAAAGATATACGTTCTTCCTGAAATTATTTTGTGAAGGTGGTTAAAAGGAAAGAAAATATTCTTGGGAATGAATGCTTCAAGAGCTGTTTTATGGGTCATTTGGTTGAAACTAATGAAAATTTTTTTAACAACATACATAGAAATTCTAGAGGAACGTGGTAGATAATTTGAGAGAATTTAAAGCGTGTAACCTTCCTTTGATCAAAGTCATATAAACGTTTTGATAAGATATCTTTCTATCATCATGGGGGCTTTCCTTCTCCTTAATCTCCCCATGCTTGATGGTAGGAAGGCTATCTCCTTGCCTTTCTTTGTATCTCTTCTGTTATCTTGGAATGAGATTTTTGTCTCACCCACCCCTCCCAATAACAAGAACTATAATAATAATAATAAAAGAAAAAAAGAAGCTGATCTTTGTTATTTGTATGTTTTTCAGGATGTTGCTATGAAATCTATGTAAAAGCAACCATGCGAGAAGAAGCTCGACAGGCAGGGACTGCTAGCGGAAGCACATGATGGAATTAAGAATCCAGTGGCAATTAAAATGTCCGGCAAAAGTTTCCAATGCTTTCATTTGTTTGCTAAATAAAGGTTGTTTTTGAAGCACCATTCTGTTAGGTTTTAATCATCAATAATATTTTTTGACCTGAGACTTTGGATCATCCTAAAGGGATAACAGGATACATTTTTATCATTATGAGCACCTTTTATAACCTTGTGTTGCCTGCTCTTTAGTTTGAAATCGAATTGACATGAAGGAGGGAGGTGAGCTGAAACTATTGAAGATTGTGAGAGATGGGATTATCCTTGAAAAACTGTTAGAATGTTGAATGAAGAATTGA

mRNA sequence

GTGGCTGAATCCATTTCTGTTTGCAGTGAAAGAAGCCCACTTTCCCTTCAGGTTTTTACATTACCAAATTTCTCCCTCATCTCACCATCGCAGCTCTCCTCTTCCTTCTCGCATCTCCTACTCAGGAACAATGGCGTTTTTGCTCAACAAAACCGCTCTTGCCTCTCGTTTCCGATCTCAATCCCAGGTGGATCCTTCATCACTCTCGCGCCGTGGATTCCACGTCGAGCCAGGAACTCGTGAAAAGGCTTTATTAGCTGAGGACCCTTCTCTAAGGCGGTTCAGATCACACAAGAAAGGTGTCTCTAGAATCAAGAAAATTGGAGATGTTCTGACCATTGTGGTTGTTGCAGGATGTTGCTATGAAATCTATGTAAAAGCAACCATGCGAGAAGAAGCTCGACAGGCAGGGACTGCTAGCGGAAGCACATGATGGAATTAAGAATCCAGTGGCAATTAAAATGTCCGGCAAAAGTTTCCAATGCTTTCATTTGTTTGCTAAATAAAGGTTGTTTTTGAAGCACCATTCTGTTAGGTTTTAATCATCAATAATATTTTTTGACCTGAGACTTTGGATCATCCTAAAGGGATAACAGGATACATTTTTATCATTATGAGCACCTTTTATAACCTTGTGTTGCCTGCTCTTTAGTTTGAAATCGAATTGACATGAAGGAGGGAGGTGAGCTGAAACTATTGAAGATTGTGAGAGATGGGATTATCCTTGAAAAACTGTTAGAATGTTGAATGAAGAATTGA

Coding sequence (CDS)

ATGGCGTTTTTGCTCAACAAAACCGCTCTTGCCTCTCGTTTCCGATCTCAATCCCAGGTGGATCCTTCATCACTCTCGCGCCGTGGATTCCACGTCGAGCCAGGAACTCGTGAAAAGGCTTTATTAGCTGAGGACCCTTCTCTAAGGCGGTTCAGATCACACAAGAAAGGTGTCTCTAGAATCAAGAAAATTGGAGATGTTCTGACCATTGTGGTTGTTGCAGGATGTTGCTATGAAATCTATGTAAAAGCAACCATGCGAGAAGAAGCTCGACAGGCAGGGACTGCTAGCGGAAGCACATGA

Protein sequence

MAFLLNKTALASRFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKKIGDVLTIVVVAGCCYEIYVKATMREEARQAGTASGST
Homology
[Close]
BLAST of CmoCh11G001150 vs. ExPASy Swiss-Prot
Match: Q3E870 (Succinate dehydrogenase subunit 7B, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH7B PE=1 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.0e-30
Identity = 66/100 (66.00%), Postives = 81/100 (81.00%), Query Frame = 0 

Query: 1   MAFLLNKTALASRFRSQSQV---DPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKG 60
           MAFLLN  +++S  RS S     D  S+SRRGFH+EPGTREKALLAED +L+RF+SHKK 
Sbjct: 1   MAFLLNNASISSHLRSSSSQKTGDALSISRRGFHIEPGTREKALLAEDSALKRFKSHKKS 60

Query: 61  VSRIKKIGDVLTIVVVAGCCYEIYVKATMREEARQAGTAS 98
           V ++K+IGDVLT+VVVAGCCYEIYVKA M++EA  AG +S
Sbjct: 61  VHKLKRIGDVLTVVVVAGCCYEIYVKAVMKKEALAAGKSS 100

[Close]
BLAST of CmoCh11G001150 vs. ExPASy Swiss-Prot
Match: Q9C5E8 (Succinate dehydrogenase subunit 7A, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH7A PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.0e-27
Identity = 66/95 (69.47%), Postives = 77/95 (81.05%), Query Frame = 0 

Query: 1  MAFLLNKTALASRFRSQSQVDPSSL--SRRGFHVEPGTREKALLAEDPSLRRFRSHKKGV 60
          MAFLLN T+++S  RS SQ    +L  SRRGFHVE G REKALLAED SLRRF+SHKKGV
Sbjct: 1  MAFLLN-TSISSHLRSSSQKTDGALAQSRRGFHVELGAREKALLAEDASLRRFKSHKKGV 60

Query: 61 SRIKKIGDVLTIVVVAGCCYEIYVKATMREEARQA 94
           R+K+IGDVLT+VVVAGCCYEIY +  MR+EA+ A
Sbjct: 61 HRLKRIGDVLTVVVVAGCCYEIYAR-VMRKEAQAA 93

[Close]
BLAST of CmoCh11G001150 vs. ExPASy Swiss-Prot
Match: Q6H611 (Succinate dehydrogenase subunit 7, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SDH7 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 8.6e-13
Identity = 40/81 (49.38%), Postives = 52/81 (64.20%), Query Frame = 0 

Query: 8  TALASRFRSQSQVDPS----SLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSRIKK 67
          +AL SR RS     P+       RRGFHVE G REKALL ED +L+RF+S+K  V ++ K
Sbjct: 8  SALRSRLRSPQPQAPALPHLQPPRRGFHVELGAREKALLEEDTALKRFKSYKNSVKQVSK 67

Query: 68 IGDVLTIVVVAGCCYEIYVKA 85
          +G++LT VV+  C YEI   A
Sbjct: 68 VGNILTGVVLFACAYEIVALA 88

[Close]
BLAST of CmoCh11G001150 vs. ExPASy TrEMBL
Match: A0A6J1F188 (succinate dehydrogenase subunit 7B, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111441204 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.6e-46
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MAFLLNKTALASRFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAFLLNKTALASRFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFLLNKTALASRFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAGTASGST 101
           IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAGTASGST
Sbjct: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAGTASGST 100

[Close]
BLAST of CmoCh11G001150 vs. ExPASy TrEMBL
Match: A0A6J1HVK4 (succinate dehydrogenase subunit 7A, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111468234 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.2e-43
Identity = 94/100 (94.00%), Postives = 96/100 (96.00%), Query Frame = 0 

Query: 1   MAFLLNKTALASRFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAFLLNKT LAS FRSQSQ DPS+LSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFLLNKTTLASHFRSQSQADPSTLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAGTASGST 101
           IKKIGDVLTIVVVAGCCYEIYV+ATMREEARQA TASGST
Sbjct: 61  IKKIGDVLTIVVVAGCCYEIYVRATMREEARQAKTASGST 100

[Close]
BLAST of CmoCh11G001150 vs. ExPASy TrEMBL
Match: A0A6J1C1M2 (succinate dehydrogenase subunit 7B, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111007450 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.8e-42
Identity = 91/100 (91.00%), Postives = 95/100 (95.00%), Query Frame = 0 

Query: 1   MAFLLNKTALASRFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAF LN+T LAS FRSQSQ DPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAGTASGST 101
           IK++GD+LTIVVVAGCCYEIYVKATMREEARQA TASGST
Sbjct: 61  IKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGST 100

[Close]
BLAST of CmoCh11G001150 vs. ExPASy TrEMBL
Match: A0A6J1E5D6 (succinate dehydrogenase subunit 7B, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111429643 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.5e-41
Identity = 91/100 (91.00%), Postives = 94/100 (94.00%), Query Frame = 0 

Query: 1   MAFLLNKTALASRFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAFLL KT+LAS FRSQSQVDPSS SRRGFH+EPGTREKALLAEDPSLRRFRSHKKGV+R
Sbjct: 12  MAFLLTKTSLASHFRSQSQVDPSSPSRRGFHIEPGTREKALLAEDPSLRRFRSHKKGVAR 71

Query: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAGTASGST 101
           IKKIGDVLTIVVVAGCCYEIYVKATMREEARQA  AS ST
Sbjct: 72  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKAASEST 111

[Close]
BLAST of CmoCh11G001150 vs. ExPASy TrEMBL
Match: A0A6J1JM91 (succinate dehydrogenase subunit 7A, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111485669 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 5.9e-41
Identity = 92/100 (92.00%), Postives = 93/100 (93.00%), Query Frame = 0 

Query: 1   MAFLLNKTALASRFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAFLL KTALAS FRSQSQVDPSS SRRGFHVEPG REKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFLLTKTALASHFRSQSQVDPSSPSRRGFHVEPGAREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAGTASGST 101
           IK+IGDVLTIVVVAGCCYEIYVKATMREEARQA  AS ST
Sbjct: 61  IKQIGDVLTIVVVAGCCYEIYVKATMREEARQAKAASEST 100

[Close]
BLAST of CmoCh11G001150 vs. NCBI nr
Match: XP_022933942.1 (succinate dehydrogenase subunit 7B, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 194.9 bits (494), Expect = 3.3e-46
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MAFLLNKTALASRFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAFLLNKTALASRFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFLLNKTALASRFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAGTASGST 101
           IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAGTASGST
Sbjct: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAGTASGST 100

[Close]
BLAST of CmoCh11G001150 vs. NCBI nr
Match: KAG6587488.1 (Succinate dehydrogenase subunit 7B, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021475.1 Succinate dehydrogenase subunit 7B, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191.8 bits (486), Expect = 2.8e-45
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MAFLLNKTALASRFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAFLLNKTALASRFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFLLNKTALASRFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAGTASGST 101
           IKKIGDVLTIVVVAGCCYEIYVKATMREEARQA TASGST
Sbjct: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKTASGST 100

[Close]
BLAST of CmoCh11G001150 vs. NCBI nr
Match: XP_023529214.1 (succinate dehydrogenase subunit 7B, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.8 bits (473), Expect = 9.1e-44
Identity = 96/100 (96.00%), Postives = 96/100 (96.00%), Query Frame = 0 

Query: 1   MAFLLNKTALASRFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAFLLNKT  AS FRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFLLNKTTFASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAGTASGST 101
           IKKIGDVLTIVVVAGCCYEIYVKATMREEARQA TASGST
Sbjct: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKTASGST 100

[Close]
BLAST of CmoCh11G001150 vs. NCBI nr
Match: XP_022969157.1 (succinate dehydrogenase subunit 7A, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 184.5 bits (467), Expect = 4.5e-43
Identity = 94/100 (94.00%), Postives = 96/100 (96.00%), Query Frame = 0 

Query: 1   MAFLLNKTALASRFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAFLLNKT LAS FRSQSQ DPS+LSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFLLNKTTLASHFRSQSQADPSTLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAGTASGST 101
           IKKIGDVLTIVVVAGCCYEIYV+ATMREEARQA TASGST
Sbjct: 61  IKKIGDVLTIVVVAGCCYEIYVRATMREEARQAKTASGST 100

[Close]
BLAST of CmoCh11G001150 vs. NCBI nr
Match: XP_022135509.1 (succinate dehydrogenase subunit 7B, mitochondrial-like [Momordica charantia])

HSP 1 Score: 181.4 bits (459), Expect = 3.8e-42
Identity = 91/100 (91.00%), Postives = 95/100 (95.00%), Query Frame = 0 

Query: 1   MAFLLNKTALASRFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60
           MAF LN+T LAS FRSQSQ DPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR
Sbjct: 1   MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAGTASGST 101
           IK++GD+LTIVVVAGCCYEIYVKATMREEARQA TASGST
Sbjct: 61  IKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGST 100

[Close]
BLAST of CmoCh11G001150 vs. TAIR 10
Match: AT5G62575.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G47833.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 133.3 bits (334), Expect = 1.1e-31
Identity = 66/99 (66.67%), Postives = 81/99 (81.82%), Query Frame = 0 

Query: 1  MAFLLNKTALASRFRSQSQV--DPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGV 60
          MAFLLN  +++S  RS S    D  S+SRRGFH+EPGTREKALLAED +L+RF+SHKK V
Sbjct: 1  MAFLLNNASISSHLRSSSSQTGDALSISRRGFHIEPGTREKALLAEDSALKRFKSHKKSV 60

Query: 61 SRIKKIGDVLTIVVVAGCCYEIYVKATMREEARQAGTAS 98
           ++K+IGDVLT+VVVAGCCYEIYVKA M++EA  AG +S
Sbjct: 61 HKLKRIGDVLTVVVVAGCCYEIYVKAVMKKEALAAGKSS 99

[Close]
BLAST of CmoCh11G001150 vs. TAIR 10
Match: AT5G62575.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G47833.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 132.9 bits (333), Expect = 1.4e-31
Identity = 66/100 (66.00%), Postives = 81/100 (81.00%), Query Frame = 0 

Query: 1   MAFLLNKTALASRFRSQSQV---DPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKG 60
           MAFLLN  +++S  RS S     D  S+SRRGFH+EPGTREKALLAED +L+RF+SHKK 
Sbjct: 1   MAFLLNNASISSHLRSSSSQKTGDALSISRRGFHIEPGTREKALLAEDSALKRFKSHKKS 60

Query: 61  VSRIKKIGDVLTIVVVAGCCYEIYVKATMREEARQAGTAS 98
           V ++K+IGDVLT+VVVAGCCYEIYVKA M++EA  AG +S
Sbjct: 61  VHKLKRIGDVLTVVVVAGCCYEIYVKAVMKKEALAAGKSS 100

[Close]
BLAST of CmoCh11G001150 vs. TAIR 10
Match: AT3G47833.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62575.2); Has 42 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 120.9 bits (302), Expect = 5.7e-28
Identity = 66/95 (69.47%), Postives = 77/95 (81.05%), Query Frame = 0 

Query: 1  MAFLLNKTALASRFRSQSQVDPSSL--SRRGFHVEPGTREKALLAEDPSLRRFRSHKKGV 60
          MAFLLN T+++S  RS SQ    +L  SRRGFHVE G REKALLAED SLRRF+SHKKGV
Sbjct: 1  MAFLLN-TSISSHLRSSSQKTDGALAQSRRGFHVELGAREKALLAEDASLRRFKSHKKGV 60

Query: 61 SRIKKIGDVLTIVVVAGCCYEIYVKATMREEARQA 94
           R+K+IGDVLT+VVVAGCCYEIY +  MR+EA+ A
Sbjct: 61 HRLKRIGDVLTVVVVAGCCYEIYAR-VMRKEAQAA 93

The following BLAST results are available for this feature:
BLAST of CmoCh11G001150 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3E8702.0e-3066.00Succinate dehydrogenase subunit 7B, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
Q9C5E88.0e-2769.47Succinate dehydrogenase subunit 7A, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
Q6H6118.6e-1349.38Succinate dehydrogenase subunit 7, mitochondrial OS=Oryza sativa subsp. japonica... [more]
BLAST of CmoCh11G001150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1F1881.6e-46100.00succinate dehydrogenase subunit 7B, mitochondrial-like OS=Cucurbita moschata OX=... [more]
A0A6J1HVK42.2e-4394.00succinate dehydrogenase subunit 7A, mitochondrial-like OS=Cucurbita maxima OX=36... [more]
A0A6J1C1M21.8e-4291.00succinate dehydrogenase subunit 7B, mitochondrial-like OS=Momordica charantia OX... [more]
A0A6J1E5D63.5e-4191.00succinate dehydrogenase subunit 7B, mitochondrial-like OS=Cucurbita moschata OX=... [more]
A0A6J1JM915.9e-4192.00succinate dehydrogenase subunit 7A, mitochondrial-like OS=Cucurbita maxima OX=36... [more]
BLAST of CmoCh11G001150 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022933942.13.3e-46100.00succinate dehydrogenase subunit 7B, mitochondrial-like [Cucurbita moschata][more]
KAG6587488.12.8e-4599.00Succinate dehydrogenase subunit 7B, mitochondrial, partial [Cucurbita argyrosper... [more]
XP_023529214.19.1e-4496.00succinate dehydrogenase subunit 7B, mitochondrial-like [Cucurbita pepo subsp. pe... [more]
XP_022969157.14.5e-4394.00succinate dehydrogenase subunit 7A, mitochondrial-like [Cucurbita maxima][more]
XP_022135509.13.8e-4291.00succinate dehydrogenase subunit 7B, mitochondrial-like [Momordica charantia][more]
BLAST of CmoCh11G001150 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G62575.11.1e-3166.67unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G62575.21.4e-3166.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G47833.15.7e-2869.47unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034573Succinate dehydrogenase subunit 7, mitochondrialPANTHERPTHR36041SUCCINATE DEHYDROGENASE SUBUNIT 7A, MITOCHONDRIAL-RELATEDcoord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G001150.1CmoCh11G001150.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)
molecular_function GO:0043495 protein-membrane adaptor activity