Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCCTAAGGATCAAGTCTTTGCAACCGAAGTTCGCCGAGGAGCCGAGTGACGTGCCAGCGCGACTAATTGAGTGCCAGCACGTAGCAGTGTTGTCAGTAATCTGGGAGCCTGATCCTTTCGAACGAAGCACTTTCGAGTGTGCGCTTTAGTTTGATTGCTGCTAGCGTGCTTTACTAAAAAGACTCGACATTCAGGCGAGCCACCTGGTGGGGTGGTACGAAGTGGGTTTAGTACGCCCTGCCAAAACCAGCTCCGAAAAAAAGAAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTTCGCATGGCCCTTATGGGCTGGGCCACACAAGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGACGGAGCGAATCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGTTGGAATCGCTAGTAATCGCAGATCAGCATGCCGCGGTGAATATGTACCCGGACCCTGTACACACTGCCCGTCACACCCTGGGAATGGGTTTCGCCCGAAGCATCGGACCAAGTCTCACCCATGACTTCCGGGTCACACTAGTGCCACAAAGGCTTTTGGTGGTCTTATTGCCGCATACCAAGGTGGGGTCTTTGACTGGGGTGAAGTCTTAA
mRNA sequence
ATGCGCCTAAGGATCAAGTCTTTGCAACCGAAGTTCGCCGAGGAGCCGAGTGACGTGCCAGCGCGACTAATTGAGTGCCAGCACGTAGCAGTGTTGTCAGCGAGCCACCTGGTGGGGTGGTACGAAGTGGGTTTAGTACGCCCTGCCAAAACCAGCTCCGAAAAAAAGAAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTTCGCATGGCCCTTATGGGCTGGGCCACACAAGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGACGGAGCGAATCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGTTGGAATCGCTAGTAATCGCAGATCAGCATGCCGCGGTGAATATGTACCCGGACCCTGTACACACTGCCCGTCACACCCTGGGAATGGGTTTCGCCCGAAGCATCGGACCAAGTCTCACCCATGACTTCCGGGTCACACTAGTGCCACAAAGGCTTTTGGTGGTCTTATTGCCGCATACCAAGGTGGGGTCTTTGACTGGGGTGAAGTCTTAA
Coding sequence (CDS)
ATGCGCCTAAGGATCAAGTCTTTGCAACCGAAGTTCGCCGAGGAGCCGAGTGACGTGCCAGCGCGACTAATTGAGTGCCAGCACGTAGCAGTGTTGTCAGCGAGCCACCTGGTGGGGTGGTACGAAGTGGGTTTAGTACGCCCTGCCAAAACCAGCTCCGAAAAAAAGAAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTTCGCATGGCCCTTATGGGCTGGGCCACACAAGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGACGGAGCGAATCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGTTGGAATCGCTAGTAATCGCAGATCAGCATGCCGCGGTGAATATGTACCCGGACCCTGTACACACTGCCCGTCACACCCTGGGAATGGGTTTCGCCCGAAGCATCGGACCAAGTCTCACCCATGACTTCCGGGTCACACTAGTGCCACAAAGGCTTTTGGTGGTCTTATTGCCGCATACCAAGGTGGGGTCTTTGACTGGGGTGAAGTCTTAA
Protein sequence
MRLRIKSLQPKFAEEPSDVPARLIECQHVAVLSASHLVGWYEVGLVRPAKTSSEKKKRCVPHSRGTASDILEEGGDDVKFAWPLWAGPHKCYNGNYNGKQGCKTERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPDPVHTARHTLGMGFARSIGPSLTHDFRVTLVPQRLLVVLLPHTKVGSLTGVKS
Homology
BLAST of CmoCh10G011310 vs. ExPASy TrEMBL
Match:
A0A5A7V4U9 (Uncharacterized protein ycf68 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44334G00030 PE=3 SV=1)
HSP 1 Score: 356.3 bits (913), Expect = 8.1e-95
Identity = 173/194 (89.18%), Postives = 177/194 (91.24%), Query Frame = 0
Query: 1 MRLRIKSLQPKFAEEPSDVPARLIECQHVAVLSASHLVGWYEVGLVRPAKTSSEKKKRCV 60
MRLRIKSLQPKFAEEPS+VPARLIECQHVAVLSASH V WYEVGLVRPAKT +RCV
Sbjct: 1 MRLRIKSLQPKFAEEPSEVPARLIECQHVAVLSASHPVVWYEVGLVRPAKTGPHYSERCV 60
Query: 61 PHSRGTASDILEEGGDDVKFAWPLWAGPHKCYNGNYNGKQGCKTERIRKDCLSSDCSLQL 120
PHSRGTAS+ILEEGGDDVK AWPLWAGPH CYNGN NGKQGCK ERIRKDCLSSDCSLQL
Sbjct: 61 PHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSSDCSLQL 120
Query: 121 GNMKLESLVIADQHAAVNMYPDPVHTARHTLGMGFARSIGPSLTHDFRVTLVPQRLLVVL 180
GNMKLESLVIADQHAAVNMYP PVHTARHTLGMGFARSIGP +THDFRV LVPQRLLVVL
Sbjct: 121 GNMKLESLVIADQHAAVNMYPGPVHTARHTLGMGFARSIGPMITHDFRVPLVPQRLLVVL 180
Query: 181 LPHTKVGSLTGVKS 195
L HT VGS TGVKS
Sbjct: 181 LAHTTVGSSTGVKS 194
BLAST of CmoCh10G011310 vs. ExPASy TrEMBL
Match:
S8D505 (Uncharacterized protein ycf68 OS=Genlisea aurea OX=192259 GN=M569_00256 PE=3 SV=1)
HSP 1 Score: 293.1 bits (749), Expect = 8.4e-76
Identity = 148/194 (76.29%), Postives = 157/194 (80.93%), Query Frame = 0
Query: 1 MRLRIKSLQPKFAEEPSDVPARLIECQHVAVLSASHLVGWYEVGLVRPAKTSSEKKKRCV 60
MRLR KS QPK AEEPSDVPA LIECQH AV + P + E++KR V
Sbjct: 1 MRLRRKSFQPKRAEEPSDVPALLIECQHYAVSNK----------YAPPKLRAPEERKRRV 60
Query: 61 PHSRGTASDILEEGGDDVKFAWPLWAGPHKCYNGNYNGKQGCKTERIRKDCLSSDCSLQL 120
PHSR TASDILEEGGD+VK AWPLWAGPH CYNGNYNGKQGCK ERIRKDCLSSDCSLQL
Sbjct: 61 PHSRRTASDILEEGGDNVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQL 120
Query: 121 GNMKLESLVIADQHAAVNMYPDPVHTARHTLGMGFARSIGPSLTHDFRVTLVPQRLLVVL 180
GNMKL+SLVIA QHAAVNMYP PVHTARHTLG+GFARSIGP++ HDF TLVPQRLLVVL
Sbjct: 121 GNMKLKSLVIAHQHAAVNMYPGPVHTARHTLGIGFARSIGPTIAHDFCGTLVPQRLLVVL 180
Query: 181 LPHTKVGSLTGVKS 195
L HT VGS TGVKS
Sbjct: 181 LAHTTVGSSTGVKS 184
BLAST of CmoCh10G011310 vs. ExPASy TrEMBL
Match:
A0A2J6L3N0 (Uncharacterized protein ycf68 OS=Lactuca sativa OX=4236 GN=LSAT_5X16200 PE=3 SV=1)
HSP 1 Score: 290.4 bits (742), Expect = 5.5e-75
Identity = 139/163 (85.28%), Postives = 145/163 (88.96%), Query Frame = 0
Query: 32 LSASHLVGWYEVGLVRPAKTSSEKKKRCVPHSRGTASDILEEGGDDVKFAWPLWAGPHKC 91
+ AS V WY VGLVRPAKT+ ++ KRCVPHSR TASDILEEGGDDVK AWPLWAGPH C
Sbjct: 47 IQASRPVVWYVVGLVRPAKTAPKQTKRCVPHSRRTASDILEEGGDDVKSAWPLWAGPHTC 106
Query: 92 YNGNYNGKQGCKTERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPDPVHTARHTL 151
YNGNYNGKQGCK ERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYP PVHTARHTL
Sbjct: 107 YNGNYNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTL 166
Query: 152 GMGFARSIGPSLTHDFRVTLVPQRLLVVLLPHTKVGSLTGVKS 195
G+GFARSIGP +THDF V LVPQRLLVVLL HT VGS TGVKS
Sbjct: 167 GIGFARSIGPMITHDFCVPLVPQRLLVVLLAHTTVGSSTGVKS 209
BLAST of CmoCh10G011310 vs. ExPASy TrEMBL
Match:
A0A5N6N714 (Uncharacterized protein ycf68 OS=Mikania micrantha OX=192012 GN=E3N88_25911 PE=3 SV=1)
HSP 1 Score: 281.2 bits (718), Expect = 3.3e-72
Identity = 147/205 (71.71%), Postives = 154/205 (75.12%), Query Frame = 0
Query: 1 MRLRIKSLQPKFAEEPSDVPARLIECQHVAVLSASHLVGWYEVGLVRPAKTSS------- 60
MRLR K LQPK AEEPSDVPA LIECQHVAVLS + L E + SS
Sbjct: 1 MRLRRKYLQPKSAEEPSDVPALLIECQHVAVLSLARLTKKIERAFLAWLVKSSFWPYLAG 60
Query: 61 -------EKKKRCVPHSRGTASDILEEGGDDVKFAWPLWAGPHKCYNGNYNGKQGCKTER 120
+K + TASDILEEGGDDVK AWPLWAGPH CYNGNYNGKQGCK ER
Sbjct: 61 DDDVELTAEKDWAFRRAARTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAER 120
Query: 121 IRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPDPVHTARHTLGMGFARSIGPSLTHD 180
IRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYP PVHTARHTLG+GFARSIGP +THD
Sbjct: 121 IRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGIGFARSIGPMITHD 180
Query: 181 FRVTLVPQRLLVVLLPHTKVGSLTG 192
V+LVPQRLLVVLL HT VGS TG
Sbjct: 181 LCVSLVPQRLLVVLLAHTTVGSSTG 205
BLAST of CmoCh10G011310 vs. ExPASy TrEMBL
Match:
A0A2J6JHW2 (Uncharacterized protein ycf68 OS=Lactuca sativa OX=4236 GN=LSAT_5X16680 PE=3 SV=1)
HSP 1 Score: 281.2 bits (718), Expect = 3.3e-72
Identity = 135/163 (82.82%), Postives = 142/163 (87.12%), Query Frame = 0
Query: 32 LSASHLVGWYEVGLVRPAKTSSEKKKRCVPHSRGTASDILEEGGDDVKFAWPLWAGPHKC 91
+ AS V WY VGLVRPAKT+ ++ KRCVPHSR TASDILEEGGDDVK AWPLWAGPH C
Sbjct: 51 IQASRPVVWYVVGLVRPAKTAPKQTKRCVPHSRRTASDILEEGGDDVKSAWPLWAGPHTC 110
Query: 92 YNGNYNGKQGCKTERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPDPVHTARHTL 151
YNGNYNGKQGCK ERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYP P+HT RHTL
Sbjct: 111 YNGNYNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPLHTVRHTL 170
Query: 152 GMGFARSIGPSLTHDFRVTLVPQRLLVVLLPHTKVGSLTGVKS 195
G+GFARSIGP +THDF V LVPQRLLVVLL HT V S T VKS
Sbjct: 171 GIGFARSIGPMITHDFCVPLVPQRLLVVLLAHTTVVSSTRVKS 213
BLAST of CmoCh10G011310 vs. NCBI nr
Match:
KAA0060781.1 (hypothetical protein E6C27_scaffold44334G00030 [Cucumis melo var. makuwa])
HSP 1 Score: 356.3 bits (913), Expect = 1.7e-94
Identity = 173/194 (89.18%), Postives = 177/194 (91.24%), Query Frame = 0
Query: 1 MRLRIKSLQPKFAEEPSDVPARLIECQHVAVLSASHLVGWYEVGLVRPAKTSSEKKKRCV 60
MRLRIKSLQPKFAEEPS+VPARLIECQHVAVLSASH V WYEVGLVRPAKT +RCV
Sbjct: 1 MRLRIKSLQPKFAEEPSEVPARLIECQHVAVLSASHPVVWYEVGLVRPAKTGPHYSERCV 60
Query: 61 PHSRGTASDILEEGGDDVKFAWPLWAGPHKCYNGNYNGKQGCKTERIRKDCLSSDCSLQL 120
PHSRGTAS+ILEEGGDDVK AWPLWAGPH CYNGN NGKQGCK ERIRKDCLSSDCSLQL
Sbjct: 61 PHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSSDCSLQL 120
Query: 121 GNMKLESLVIADQHAAVNMYPDPVHTARHTLGMGFARSIGPSLTHDFRVTLVPQRLLVVL 180
GNMKLESLVIADQHAAVNMYP PVHTARHTLGMGFARSIGP +THDFRV LVPQRLLVVL
Sbjct: 121 GNMKLESLVIADQHAAVNMYPGPVHTARHTLGMGFARSIGPMITHDFRVPLVPQRLLVVL 180
Query: 181 LPHTKVGSLTGVKS 195
L HT VGS TGVKS
Sbjct: 181 LAHTTVGSSTGVKS 194
BLAST of CmoCh10G011310 vs. NCBI nr
Match:
EPS74490.1 (hypothetical protein M569_00256 [Genlisea aurea])
HSP 1 Score: 293.1 bits (749), Expect = 1.7e-75
Identity = 148/194 (76.29%), Postives = 157/194 (80.93%), Query Frame = 0
Query: 1 MRLRIKSLQPKFAEEPSDVPARLIECQHVAVLSASHLVGWYEVGLVRPAKTSSEKKKRCV 60
MRLR KS QPK AEEPSDVPA LIECQH AV + P + E++KR V
Sbjct: 1 MRLRRKSFQPKRAEEPSDVPALLIECQHYAVSNK----------YAPPKLRAPEERKRRV 60
Query: 61 PHSRGTASDILEEGGDDVKFAWPLWAGPHKCYNGNYNGKQGCKTERIRKDCLSSDCSLQL 120
PHSR TASDILEEGGD+VK AWPLWAGPH CYNGNYNGKQGCK ERIRKDCLSSDCSLQL
Sbjct: 61 PHSRRTASDILEEGGDNVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQL 120
Query: 121 GNMKLESLVIADQHAAVNMYPDPVHTARHTLGMGFARSIGPSLTHDFRVTLVPQRLLVVL 180
GNMKL+SLVIA QHAAVNMYP PVHTARHTLG+GFARSIGP++ HDF TLVPQRLLVVL
Sbjct: 121 GNMKLKSLVIAHQHAAVNMYPGPVHTARHTLGIGFARSIGPTIAHDFCGTLVPQRLLVVL 180
Query: 181 LPHTKVGSLTGVKS 195
L HT VGS TGVKS
Sbjct: 181 LAHTTVGSSTGVKS 184
BLAST of CmoCh10G011310 vs. NCBI nr
Match:
PLY81935.1 (hypothetical protein LSAT_5X16200 [Lactuca sativa])
HSP 1 Score: 290.4 bits (742), Expect = 1.1e-74
Identity = 139/163 (85.28%), Postives = 145/163 (88.96%), Query Frame = 0
Query: 32 LSASHLVGWYEVGLVRPAKTSSEKKKRCVPHSRGTASDILEEGGDDVKFAWPLWAGPHKC 91
+ AS V WY VGLVRPAKT+ ++ KRCVPHSR TASDILEEGGDDVK AWPLWAGPH C
Sbjct: 47 IQASRPVVWYVVGLVRPAKTAPKQTKRCVPHSRRTASDILEEGGDDVKSAWPLWAGPHTC 106
Query: 92 YNGNYNGKQGCKTERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPDPVHTARHTL 151
YNGNYNGKQGCK ERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYP PVHTARHTL
Sbjct: 107 YNGNYNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTL 166
Query: 152 GMGFARSIGPSLTHDFRVTLVPQRLLVVLLPHTKVGSLTGVKS 195
G+GFARSIGP +THDF V LVPQRLLVVLL HT VGS TGVKS
Sbjct: 167 GIGFARSIGPMITHDFCVPLVPQRLLVVLLAHTTVGSSTGVKS 209
BLAST of CmoCh10G011310 vs. NCBI nr
Match:
KAG8363149.1 (hypothetical protein BUALT_BualtMtG0001200 [Buddleja alternifolia])
HSP 1 Score: 288.1 bits (736), Expect = 5.6e-74
Identity = 137/157 (87.26%), Postives = 143/157 (91.08%), Query Frame = 0
Query: 38 VGWYEVGLVRPAKTSSEKKKRCVPHSRGTASDILEEGGDDVKFAWPLWAGPHKCYNGNYN 97
V WY VGLVRPAKT+ +++KRCVPHSR TASDILEEGGDDVK AWPLWAGPH CYNGNYN
Sbjct: 456 VVWYVVGLVRPAKTAPKERKRCVPHSRRTASDILEEGGDDVKSAWPLWAGPHTCYNGNYN 515
Query: 98 GKQGCKTERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPDPVHTARHTLGMGFAR 157
GKQGCK ERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYP PVHTARHTLG+GFAR
Sbjct: 516 GKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGIGFAR 575
Query: 158 SIGPSLTHDFRVTLVPQRLLVVLLPHTKVGSLTGVKS 195
SIGP +THDF VTLVPQRLLV LL HT VGS TGVKS
Sbjct: 576 SIGPMITHDFCVTLVPQRLLVGLLAHTTVGSSTGVKS 612
BLAST of CmoCh10G011310 vs. NCBI nr
Match:
KAG8362786.1 (hypothetical protein BUALT_BualtUnG0044000 [Buddleja alternifolia])
HSP 1 Score: 288.1 bits (736), Expect = 5.6e-74
Identity = 137/157 (87.26%), Postives = 143/157 (91.08%), Query Frame = 0
Query: 38 VGWYEVGLVRPAKTSSEKKKRCVPHSRGTASDILEEGGDDVKFAWPLWAGPHKCYNGNYN 97
V WY VGLVRPAKT+ +++KRCVPHSR TASDILEEGGDDVK AWPLWAGPH CYNGNYN
Sbjct: 498 VVWYVVGLVRPAKTAPKERKRCVPHSRRTASDILEEGGDDVKSAWPLWAGPHTCYNGNYN 557
Query: 98 GKQGCKTERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPDPVHTARHTLGMGFAR 157
GKQGCK ERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYP PVHTARHTLG+GFAR
Sbjct: 558 GKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGIGFAR 617
Query: 158 SIGPSLTHDFRVTLVPQRLLVVLLPHTKVGSLTGVKS 195
SIGP +THDF VTLVPQRLLV LL HT VGS TGVKS
Sbjct: 618 SIGPMITHDFCVTLVPQRLLVGLLAHTTVGSSTGVKS 654
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V4U9 | 8.1e-95 | 89.18 | Uncharacterized protein ycf68 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... | [more] |
S8D505 | 8.4e-76 | 76.29 | Uncharacterized protein ycf68 OS=Genlisea aurea OX=192259 GN=M569_00256 PE=3 SV=... | [more] |
A0A2J6L3N0 | 5.5e-75 | 85.28 | Uncharacterized protein ycf68 OS=Lactuca sativa OX=4236 GN=LSAT_5X16200 PE=3 SV=... | [more] |
A0A5N6N714 | 3.3e-72 | 71.71 | Uncharacterized protein ycf68 OS=Mikania micrantha OX=192012 GN=E3N88_25911 PE=3... | [more] |
A0A2J6JHW2 | 3.3e-72 | 82.82 | Uncharacterized protein ycf68 OS=Lactuca sativa OX=4236 GN=LSAT_5X16680 PE=3 SV=... | [more] |
Match Name | E-value | Identity | Description | |
KAA0060781.1 | 1.7e-94 | 89.18 | hypothetical protein E6C27_scaffold44334G00030 [Cucumis melo var. makuwa] | [more] |
EPS74490.1 | 1.7e-75 | 76.29 | hypothetical protein M569_00256 [Genlisea aurea] | [more] |
PLY81935.1 | 1.1e-74 | 85.28 | hypothetical protein LSAT_5X16200 [Lactuca sativa] | [more] |
KAG8363149.1 | 5.6e-74 | 87.26 | hypothetical protein BUALT_BualtMtG0001200 [Buddleja alternifolia] | [more] |
KAG8362786.1 | 5.6e-74 | 87.26 | hypothetical protein BUALT_BualtUnG0044000 [Buddleja alternifolia] | [more] |
Match Name | E-value | Identity | Description | |