CmoCh10G011300 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh10G011300
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr10: 9325113 .. 9325427 (-)
RNA-Seq Expression	CmoCh10G011300
Synteny	CmoCh10G011300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGTTGATAAGATCCTTCCATTTATTAGCACCTTAGGATGGCATAGCCTGAAAGTTAAGGGCGAGGTTCAAACGAAGAAAAGCTTACGGTGGATACCTAGGCACCCATAGACGAGGAAGGGCGTAGTCAGCGACGAAATGCTTTGGGGAGTTGAAAATCAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGCTGAACTCATGGGCAGGCAAGAGAGAACCTAGCGAACTGAAACATCTTAGTAGACTAAAAGAAAGCAAAAGCGATTCCCATAGTAGCGGCGAGTGGGAACAGTGA

mRNA sequence

ATGGACGTTGATAAGATCCTTCCATTTATTAGCACCTTAGGATGGCATAGCCTGAAAGTTAAGGGCGAGACGAGGAAGGGCGTAGTCAGCGACGAAATGCTTTGGGGAGTTGAAAATCAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGCTGAACTCATGGGCAGGCAAGAGAGAACCTAGCGAACTGAAACATCTTAGTAGACTAAAAGAAAGCAAAAGCGATTCCCATAGTAGCGGCGAGTGGGAACAGTGA

Coding sequence (CDS)

ATGGACGTTGATAAGATCCTTCCATTTATTAGCACCTTAGGATGGCATAGCCTGAAAGTTAAGGGCGAGACGAGGAAGGGCGTAGTCAGCGACGAAATGCTTTGGGGAGTTGAAAATCAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGCTGAACTCATGGGCAGGCAAGAGAGAACCTAGCGAACTGAAACATCTTAGTAGACTAAAAGAAAGCAAAAGCGATTCCCATAGTAGCGGCGAGTGGGAACAGTGA

Protein sequence

MDVDKILPFISTLGWHSLKVKGETRKGVVSDEMLWGVENQRRSGDSRIGQPFKLLLNSWAGKREPSELKHLSRLKESKSDSHSSGEWEQ

Homology

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BLAST of CmoCh10G011300 vs. ExPASy TrEMBL
Match: A0A6N2L5J2 (Uncharacterized protein ycf68 (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS121604 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.1e-27
Identity = 70/90 (77.78%), Postives = 75/90 (83.33%), Query Frame = 0


Query: 1   MDVDKILPFISTLGWHSLKVKGET---RKGVVSDEMLWGVENQRRSGDSRIGQPFKLLLN 60
           MDVDKILPF STLGWHSLKVKGE     +GVVSDEML GVEN+RRSGDSRIGQPFKLL N
Sbjct: 746 MDVDKILPFSSTLGWHSLKVKGEAPRDEEGVVSDEMLRGVENKRRSGDSRIGQPFKLLPN 805

Query: 61  SWAGKREPSELKHLS-RLKESKSDSHSSGE 87
            WAGKR+P ELKHLS + K  +SDS SSGE
Sbjct: 806 PWAGKRQPGELKHLSNQRKRKQSDSRSSGE 835

[Close]

BLAST of CmoCh10G011300 vs. ExPASy TrEMBL
Match: A0A5N6L0U6 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025335 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 67/93 (72.04%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 1  MDVDKILPFISTLGWHSLKVKG---------------ETRKGVVSDEMLWGVENQRRSGD 60
          MDVDKILPF STLGWHSLKVKG               ETRKGVVSDEML GVEN+RRSGD
Sbjct: 1  MDVDKILPFSSTLGWHSLKVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENKRRSGD 60

Query: 61 SRIGQPFKLLLNSWAGKREPSELKHLSRLKESK 79
          SRIGQPFKLLLN WAGKR+P ELKHLS  ++ K
Sbjct: 61 SRIGQPFKLLLNPWAGKRQPGELKHLSSQRKRK 93

[Close]

BLAST of CmoCh10G011300 vs. ExPASy TrEMBL
Match: A0A2N9HUL9 (Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43295 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.7e-26
Identity = 66/93 (70.97%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 1   MDVDKILPFISTLGWHSLKVKG---------------ETRKGVVSDEMLWGVENQRRSGD 60
           MDVDKILPF STLGWHSLKVKG               ETRKGVVSDEML GVEN+RRSGD
Sbjct: 55  MDVDKILPFSSTLGWHSLKVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENKRRSGD 114

Query: 61  SRIGQPFKLLLNSWAGKREPSELKHLSRLKESK 79
           SRIGQPF+LLLN WAGKR+P ELKHLS  ++ K
Sbjct: 115 SRIGQPFELLLNPWAGKRQPGELKHLSSQRKRK 147

[Close]

BLAST of CmoCh10G011300 vs. ExPASy TrEMBL
Match: A0A2P2JY74 (Uncharacterized protein ycf68 OS=Rhizophora mucronata OX=61149 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.1e-25
Identity = 67/95 (70.53%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 1   MDVDKILPFISTLGWHS--LKVKG---------------ETRKGVVSDEMLWGVENQRRS 60
           MDVDKILPF STLGWHS  LKVKG               ETRKGVVSDEML GVEN+RRS
Sbjct: 55  MDVDKILPFSSTLGWHSLNLKVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENKRRS 114

Query: 61  GDSRIGQPFKLLLNSWAGKREPSELKHLSRLKESK 79
           GDSRIGQPFKLLLN WAGKR+P ELKHLS  ++ K
Sbjct: 115 GDSRIGQPFKLLLNPWAGKRQPGELKHLSNQRKRK 149

[Close]

BLAST of CmoCh10G011300 vs. ExPASy TrEMBL
Match: A0A444XM41 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B09g096705 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.6e-24
Identity = 62/87 (71.26%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 1   MDVDKILPFISTLGWHSLKVKG---------------ETRKGVVSDEMLWGVENQRRSGD 60
           MDVDKILP  STLGWHSL+VKG               ETRKGVVSDEMLWGVEN+RRSGD
Sbjct: 54  MDVDKILPSSSTLGWHSLQVKGEVQTRKGLWWIPRHPETRKGVVSDEMLWGVENKRRSGD 113

Query: 61  SRIGQPFKLLLNSWAGKREPSELKHLS 73
           SRIGQPF+LLLN  AGKR+P +LKHLS
Sbjct: 114 SRIGQPFELLLNPRAGKRQPGQLKHLS 140

[Close]

BLAST of CmoCh10G011300 vs. NCBI nr
Match: KAB8477469.1 (hypothetical protein FH972_025335 [Carpinus fangiana])

HSP 1 Score: 128.6 bits (322), Expect = 2.6e-26
Identity = 67/93 (72.04%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 1  MDVDKILPFISTLGWHSLKVKG---------------ETRKGVVSDEMLWGVENQRRSGD 60
          MDVDKILPF STLGWHSLKVKG               ETRKGVVSDEML GVEN+RRSGD
Sbjct: 1  MDVDKILPFSSTLGWHSLKVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENKRRSGD 60

Query: 61 SRIGQPFKLLLNSWAGKREPSELKHLSRLKESK 79
          SRIGQPFKLLLN WAGKR+P ELKHLS  ++ K
Sbjct: 61 SRIGQPFKLLLNPWAGKRQPGELKHLSSQRKRK 93

[Close]

BLAST of CmoCh10G011300 vs. NCBI nr
Match: QHN92995.1 (uncharacterized protein DS421_17g588830 [Arachis hypogaea])

HSP 1 Score: 127.1 bits (318), Expect = 7.6e-26
Identity = 73/101 (72.28%), Postives = 79/101 (78.22%), Query Frame = 0


Query: 1   MDVDKILPFISTLGWHSLKVKGE--TRK------------GVVSDEMLWGVENQRRSGDS 60
           MDVDKILP  STLGWHSL+VKGE  TRK            GVVSDEML GVEN+RRSGDS
Sbjct: 1   MDVDKILPSSSTLGWHSLQVKGEVQTRKGLWWIPRHPETRGVVSDEMLRGVENKRRSGDS 60

Query: 61  RIGQPFKLLLNSWAGKREPSELKHL-SRLKESKSDSHSSGE 87
           RIGQPF+LLLN  AGKR+P +LKHL S+ KESKSDSHSSGE
Sbjct: 61  RIGQPFELLLNPRAGKRQPGQLKHLSSQRKESKSDSHSSGE 101

[Close]

BLAST of CmoCh10G011300 vs. NCBI nr
Match: KAG5222336.1 (Vacuolar protein sorting-associated protein [Salix suchowensis])

HSP 1 Score: 126.3 bits (316), Expect = 1.3e-25
Identity = 66/93 (70.97%), Postives = 70/93 (75.27%), Query Frame = 0


Query: 1   MDVDKILPFISTLGWHSLKVKG---------------ETRKGVVSDEMLWGVENQRRSGD 60
           MDVDKILPF STLGWHSLKVKG               ETRKGVVSDEML GVEN+RRSGD
Sbjct: 139 MDVDKILPFSSTLGWHSLKVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENKRRSGD 198

Query: 61  SRIGQPFKLLLNSWAGKREPSELKHLSRLKESK 79
           SRIGQPFKLL N WAGKR+P ELKHLS  ++ K
Sbjct: 199 SRIGQPFKLLPNPWAGKRQPGELKHLSNQRKRK 231

[Close]

BLAST of CmoCh10G011300 vs. NCBI nr
Match: KAF7117209.1 (hypothetical protein RHSIM_RhsimPtG0005300 [Rhododendron simsii])

HSP 1 Score: 122.5 bits (306), Expect = 1.9e-24
Identity = 64/93 (68.82%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 1   MDVDKILPFISTLGWHSLKVKG---------------ETRKGVVSDEMLWGVENQRRSGD 60
           MDVDKILPF STLGWHSLKVKG               ETRKGVVSDEML GVEN+ RSGD
Sbjct: 84  MDVDKILPFSSTLGWHSLKVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENKHRSGD 143

Query: 61  SRIGQPFKLLLNSWAGKREPSELKHLSRLKESK 79
           SRIGQPF+LLLN WA KR+P ELKHLS  ++ K
Sbjct: 144 SRIGQPFELLLNPWADKRQPGELKHLSSQRKRK 176

[Close]

BLAST of CmoCh10G011300 vs. NCBI nr
Match: RYQ90674.1 (hypothetical protein Ahy_B09g096705 isoform B [Arachis hypogaea])

HSP 1 Score: 120.9 bits (302), Expect = 5.4e-24
Identity = 62/87 (71.26%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 1   MDVDKILPFISTLGWHSLKVKG---------------ETRKGVVSDEMLWGVENQRRSGD 60
           MDVDKILP  STLGWHSL+VKG               ETRKGVVSDEMLWGVEN+RRSGD
Sbjct: 58  MDVDKILPSSSTLGWHSLQVKGEVQTRKGLWWIPRHPETRKGVVSDEMLWGVENKRRSGD 117

Query: 61  SRIGQPFKLLLNSWAGKREPSELKHLS 73
           SRIGQPF+LLLN  AGKR+P +LKHLS
Sbjct: 118 SRIGQPFELLLNPRAGKRQPGQLKHLS 144

The following BLAST results are available for this feature:

BLAST of CmoCh10G011300 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh10G011300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6N2L5J2	1.1e-27	77.78	Uncharacterized protein ycf68 (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOC...	[more]
A0A5N6L0U6	1.3e-26	72.04	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025335 PE=4 SV=1	[more]
A0A2N9HUL9	3.7e-26	70.97	Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43295 PE=3...	[more]
A0A2P2JY74	3.1e-25	70.53	Uncharacterized protein ycf68 OS=Rhizophora mucronata OX=61149 PE=3 SV=1	[more]
A0A444XM41	2.6e-24	71.26	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B09g096705 PE=4 SV=1	[more]

BLAST of CmoCh10G011300 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB8477469.1	2.6e-26	72.04	hypothetical protein FH972_025335 [Carpinus fangiana]	[more]
QHN92995.1	7.6e-26	72.28	uncharacterized protein DS421_17g588830 [Arachis hypogaea]	[more]
KAG5222336.1	1.3e-25	70.97	Vacuolar protein sorting-associated protein [Salix suchowensis]	[more]
KAF7117209.1	1.9e-24	68.82	hypothetical protein RHSIM_RhsimPtG0005300 [Rhododendron simsii]	[more]
RYQ90674.1	5.4e-24	71.26	hypothetical protein Ahy_B09g096705 isoform B [Arachis hypogaea]	[more]

BLAST of CmoCh10G011300 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G011300.1	CmoCh10G011300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
cellular_component	GO:0009536	plastid