CmoCh10G011210 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh10G011210
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Translation initiation factor 1
Location	Cmo_Chr10: 8442268 .. 8442600 (+)
RNA-Seq Expression	CmoCh10G011210
Synteny	CmoCh10G011210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCGAGAAGCTCGACTACAGGGAATCGGCGGAGAAATTTTGTGTTATATATGGTAATCTTTATGATATTCAAATAACTTCCCTATATTGTAAAAAAAAAAAAGAGGTGGATTTATAATAGCACTCCCCTTTCATTAATTGATACTTTGAAACGGGTTTCATCTGGAATGAAAGAACAAAAAAAAAAAGGATTTATGCAGATTTAATTACTGAATCACTTCCCAATGGTATGTTTGGGGTTTGTTTAGATAATGAGGATCCAATTCTAGGTTACGTTTCAGGAAGGATTCGACATAGTTTTATACATATACTAGGTCATATAGAGTCAAAATTG

mRNA sequence

ACCGAGAAGCTCGACTACAGGGAATCGGCGGAGAAATTTTGTGTTATATATGATTTAATTACTGAATCACTTCCCAATGGTATGTTTGGGGTTTGTTTAGATAATGAGGATCCAATTCTAGGTTACGTTTCAGGAAGGATTCGACATAGTTTTATACATATACTAGGTCATATAGAGTCAAAATTG

Coding sequence (CDS)

ACCGAGAAGCTCGACTACAGGGAATCGGCGGAGAAATTTTGTGTTATATATGATTTAATTACTGAATCACTTCCCAATGGTATGTTTGGGGTTTGTTTAGATAATGAGGATCCAATTCTAGGTTACGTTTCAGGAAGGATTCGACATAGTTTTATACATATACTAGGTCATATAGAGTCAAAATTG

Protein sequence

TEKLDYRESAEKFCVIYDLITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL

Homology

[Close]

BLAST of CmoCh10G011210 vs. ExPASy Swiss-Prot
Match: A5J1W9 (Translation initiation factor IF-1, chloroplastic OS=Cucumis sativus OX=3659 GN=infA PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.5e-12
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 19 LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHIL 56
          LITESL N MF VCL+NEDPILGYVSGRIRHSFIHIL
Sbjct: 11 LITESLTNDMFWVCLENEDPILGYVSGRIRHSFIHIL 47

[Close]

BLAST of CmoCh10G011210 vs. ExPASy Swiss-Prot
Match: P08698 (Translation initiation factor IF-1, chloroplastic OS=Spinacia oleracea OX=3562 GN=infA PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.2e-10
Identity = 32/37 (86.49%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 19 LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHIL 56
          LITESLPNGMF V LDNEDPILGYVSGRIR S I IL
Sbjct: 11 LITESLPNGMFWVRLDNEDPILGYVSGRIRRSSIRIL 47

[Close]

BLAST of CmoCh10G011210 vs. ExPASy Swiss-Prot
Match: Q7YJU4 (Translation initiation factor IF-1, chloroplastic OS=Calycanthus floridus var. glaucus OX=212734 GN=infA PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.5e-10
Identity = 32/37 (86.49%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 19 LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHIL 56
          LITESLPNGMF V LDNED ILGYVSGRIR SFI IL
Sbjct: 11 LITESLPNGMFRVRLDNEDLILGYVSGRIRRSFIRIL 47

[Close]

BLAST of CmoCh10G011210 vs. ExPASy Swiss-Prot
Match: A6MMF7 (Translation initiation factor IF-1, chloroplastic OS=Chloranthus spicatus OX=13006 GN=infA PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.5e-10
Identity = 32/37 (86.49%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 19 LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHIL 56
          LITESLPNGMF V LDNED ILGYVSGRIR SFI IL
Sbjct: 11 LITESLPNGMFRVRLDNEDLILGYVSGRIRRSFIRIL 47

[Close]

BLAST of CmoCh10G011210 vs. ExPASy Swiss-Prot
Match: Q06GW2 (Translation initiation factor IF-1, chloroplastic OS=Drimys granadensis OX=224735 GN=infA PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.5e-10
Identity = 32/37 (86.49%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 19 LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHIL 56
          LITESLPNGMF V LDNED ILGYVSGRIR SFI IL
Sbjct: 11 LITESLPNGMFRVRLDNEDLILGYVSGRIRRSFIRIL 47

[Close]

BLAST of CmoCh10G011210 vs. ExPASy TrEMBL
Match: A0A2H4T1Y1 (Translation initiation factor 1 OS=Cucurbita maxima OX=3661 GN=infA PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.7e-18
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 18 DLITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL 63
          DLITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL
Sbjct: 10 DLITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL 54

[Close]

BLAST of CmoCh10G011210 vs. ExPASy TrEMBL
Match: A0A2H4T267 (Translation initiation factor 1 OS=Cucurbita moschata OX=3662 GN=infA PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.7e-18
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 18 DLITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL 63
          DLITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL
Sbjct: 10 DLITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL 54

[Close]

BLAST of CmoCh10G011210 vs. ExPASy TrEMBL
Match: A0A410HFB7 (InfA OS=Trichosanthes kirilowii OX=3677 GN=infA PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.3e-16
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 16 IYD-LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL 63
          IY+ LITESLPNGMFGVCLDNEDPILGYVS RIRHSFIH+LGHIESKL
Sbjct: 7  IYEGLITESLPNGMFGVCLDNEDPILGYVSERIRHSFIHLLGHIESKL 54

[Close]

BLAST of CmoCh10G011210 vs. ExPASy TrEMBL
Match: A0A6M4K3R3 (Translation initiation factor 1 OS=Herpetospermum pedunculosum OX=386182 GN=infA PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.6e-15
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 16 IYD-LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL 63
          IY+ LITESLPNGMFGVCLDNEDPIL YVS RIRHSFIHILGHIESKL
Sbjct: 7  IYEGLITESLPNGMFGVCLDNEDPILSYVSERIRHSFIHILGHIESKL 54

[Close]

BLAST of CmoCh10G011210 vs. ExPASy TrEMBL
Match: A0A1P8LEB1 (Translation initiation factor 1 OS=Citrullus mucosospermus OX=519315 GN=infA PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.5e-13
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 19 LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIES 61
          LITESL NGMF VCLDNEDPILGYVSGRIRHSFIHILGH ES
Sbjct: 11 LITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHILGHRES 52

[Close]

BLAST of CmoCh10G011210 vs. NCBI nr
Match: YP_009447485.1 (translation initiation factor 1 [Cucurbita maxima] >YP_009447570.1 translation initiation factor 1 [Cucurbita moschata] >ATY69881.1 translation initiation factor 1 [Cucurbita maxima] >ATY69963.1 translation initiation factor 1 [Cucurbita moschata])

HSP 1 Score: 98.6 bits (244), Expect = 2.0e-17
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 18 DLITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL 63
          DLITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL
Sbjct: 10 DLITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL 54

[Close]

BLAST of CmoCh10G011210 vs. NCBI nr
Match: YP_009560870.1 (InfA [Trichosanthes kirilowii] >QAB33221.1 InfA [Trichosanthes kirilowii])

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-15
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 16 IYD-LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL 63
          IY+ LITESLPNGMFGVCLDNEDPILGYVS RIRHSFIH+LGHIESKL
Sbjct: 7  IYEGLITESLPNGMFGVCLDNEDPILGYVSERIRHSFIHLLGHIESKL 54

[Close]

BLAST of CmoCh10G011210 vs. NCBI nr
Match: QJR52992.1 (translation initiation factor 1 [Herpetospermum pedunculosum])

HSP 1 Score: 91.3 bits (225), Expect = 3.2e-15
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 16 IYD-LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESKL 63
          IY+ LITESLPNGMFGVCLDNEDPIL YVS RIRHSFIHILGHIESKL
Sbjct: 7  IYEGLITESLPNGMFGVCLDNEDPILSYVSERIRHSFIHILGHIESKL 54

[Close]

BLAST of CmoCh10G011210 vs. NCBI nr
Match: QWV60874.1 (translation initiation factor 1 [Cucurbita ficifolia] >QZL38803.1 translational initiation factor 1 [Cucurbita ficifolia])

HSP 1 Score: 88.6 bits (218), Expect = 2.1e-14
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 19 LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIE 60
          LITESLPNGMFGVCLDNEDP LGYVSGRIRHSFIHILGHIE
Sbjct: 11 LITESLPNGMFGVCLDNEDPSLGYVSGRIRHSFIHILGHIE 51

[Close]

BLAST of CmoCh10G011210 vs. NCBI nr
Match: QSQ72345.1 (translational initiation factor 1 [Benincasa hispida])

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-13
Identity = 40/43 (93.02%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 19 LITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHILGHIESK 62
          LITESL NGMF VCLDNEDPILGYVSGRIRHSFIHILGH ESK
Sbjct: 11 LITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHILGHRESK 53

[Close]

BLAST of CmoCh10G011210 vs. TAIR 10
Match: AT4G11175.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 57.8 bits (138), Expect = 3.7e-09
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 3   KLDYRESAEKFCVIYDLITESLPNGMFGVCLDNEDPILGYVSGRIRHSFIHIL 56
           K   +E + K  VI  L+TESLPNGMF V L+N D ILGY+ G+IR +FI IL
Sbjct: 63  KPQVKEGSNK-TVIEGLVTESLPNGMFRVDLENGDNILGYICGKIRKNFIRIL 114

The following BLAST results are available for this feature:

BLAST of CmoCh10G011210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A5J1W9	3.5e-12	89.19	Translation initiation factor IF-1, chloroplastic OS=Cucumis sativus OX=3659 GN=...	[more]
P08698	3.2e-10	86.49	Translation initiation factor IF-1, chloroplastic OS=Spinacia oleracea OX=3562 G...	[more]
Q7YJU4	5.5e-10	86.49	Translation initiation factor IF-1, chloroplastic OS=Calycanthus floridus var. g...	[more]
A6MMF7	5.5e-10	86.49	Translation initiation factor IF-1, chloroplastic OS=Chloranthus spicatus OX=130...	[more]
Q06GW2	5.5e-10	86.49	Translation initiation factor IF-1, chloroplastic OS=Drimys granadensis OX=22473...	[more]

BLAST of CmoCh10G011210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2H4T1Y1	9.7e-18	100.00	Translation initiation factor 1 OS=Cucurbita maxima OX=3661 GN=infA PE=3 SV=1	[more]
A0A2H4T267	9.7e-18	100.00	Translation initiation factor 1 OS=Cucurbita moschata OX=3662 GN=infA PE=3 SV=1	[more]
A0A410HFB7	5.3e-16	91.67	InfA OS=Trichosanthes kirilowii OX=3677 GN=infA PE=3 SV=1	[more]
A0A6M4K3R3	1.6e-15	91.67	Translation initiation factor 1 OS=Herpetospermum pedunculosum OX=386182 GN=infA...	[more]
A0A1P8LEB1	2.5e-13	92.86	Translation initiation factor 1 OS=Citrullus mucosospermus OX=519315 GN=infA PE=...	[more]

BLAST of CmoCh10G011210 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009447485.1	2.0e-17	100.00	translation initiation factor 1 [Cucurbita maxima] >YP_009447570.1 translation i...	[more]
YP_009560870.1	1.1e-15	91.67	InfA [Trichosanthes kirilowii] >QAB33221.1 InfA [Trichosanthes kirilowii]	[more]
QJR52992.1	3.2e-15	91.67	translation initiation factor 1 [Herpetospermum pedunculosum]	[more]
QWV60874.1	2.1e-14	97.56	translation initiation factor 1 [Cucurbita ficifolia] >QZL38803.1 translational ...	[more]
QSQ72345.1	1.3e-13	93.02	translational initiation factor 1 [Benincasa hispida]	[more]

BLAST of CmoCh10G011210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G11175.1	3.7e-09	56.60	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 6..58 e-value: 2.0E-10 score: 42.1
IPR004368	Translation initiation factor IF-1	PANTHER	PTHR33370	TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC	coord: 9..55
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 11..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G011210.1	CmoCh10G011210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003743	translation initiation factor activity