CmoCh10G011200 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh10G011200
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	DNA-directed RNA polymerase subunit beta''
Location	Cmo_Chr10: 8241038 .. 8256037 (-)
RNA-Seq Expression	CmoCh10G011200
Synteny	CmoCh10G011200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGGTTTGAGTTGAAATCAGTTAGTAATTTGTTGTAAGAACTTTCAAAACTATTTTTAAAAAATATTTTTAAATTTTCAAAAGTGGTATGCTTTTTAACTTTTTTTTTTTTTTCTAAAAGTTTAAGATAGCTGCTGACCTTTAATACCCGTTGTGTGACTTTTTTTCTTTTCTTCATGTAACCGTAGTTCGTACTTGGTTTAAGGTTCATATAGAATACTAAGTGATTCCTACAAATAGTTATTGAGAAAAGTCCAGGGTGACTAACCTTTTGTCCGATGTTTAGGATTCTGTTTCTTTAGCTTCCATTACTCGTTTTCCTTCAAGTTTTCTGTAGTAGCTTCCTTAATGAGTCTAGTTTCTAAAACCATTGAGAATTTTGTGAGAACCACTTGGAAAGGAGTTCAATTTGATGAAAAACTAATGAGGTTCAATTTTAAGCGTGATGAAAAACTAATGTCATCGTCATCGTCTTCTTCCTCCCACAAGGGAAGGACACGACTCATGACGTTGCTCCTCCGTCTGAAAACAGAGTCCGCCAGCCCATTCCAAAGCATTACTCCCCTCGATTCCTTCATAAAAATTAAAGATGAATTGTCAAAGAAGAGTTTGGGATAGATATCTCACCTGCTCGTAAACTACAACATAAGTTACAGACGTTCAAAGTCGAGTGAAAACTCGTTTTGTCGCTGAAGTAAACTCAGGAGGGGTGTTGTTATTGGTTACGACGATGCAAGCACTGTCAGGCCACACCTCCTTCATCAAAGATCCTCCTTACACCTTTCTTAAACTAAAGGCATAATTCTTAGAGGTTGTCTGTGTTGGGTTTTATGTCCTAAAACTCATAGTTTGTAAACAAAAACATATTCTATTTTCAATAAAGTTATTATTGTTGTTTATGCAGTAAAGATTGTTATTGAATAAAGTGAACTTTACGATCATTAATCTAAATCCAATAAACTAAGAACACTCTGCCTATAGTATAATTACTTGAATTATATGTAGAGACATAAGAGTGGATCAAGTTCAAGTATATAGTCAAAATGATCTATAGTATAGGGATAAGGCTGAGTACCTTATTCTAGGGACACTATGGATGTGGCCCACTTTTGTATATGATATAAACAATGAGACCACTAAATTGTACATATGAAGACATGTGAGTGGGGGCGTCCTATGCAATGAGTATTGTATAAGATCGGACCATGAAGAAAACCACTTTCACGTTAGAATGTCGTTTACTGTTGAGACTGATTTTCTTTTCATTCGATAACCTAGGTAACTCGATTTTAATCCTGAGCTAACCATGAACTCCCGTTTATTCAGAATTATCCTTAGATTTGCATGGGTGAGAGTGACTCTAGTTCGCCGACTCAATTGCCTCCCATTTCAGGGGTAAGACTGGGTGAATGGCTGGGGACATGGGGTGCAAGATGGAATTCACTCCTACCCACTTTTAGGGATAGAAGAGAGGTAGTTCCCTTAAGCACTGACTCCAGGTCTTGAACAAGGGGCCCCACCCTCTCATTGGCCTGAGAGGGATTCGGTTTACTGGTTGGACCACAAACCAATTGTTCGTTAGAGGATCAGTGAGACATAAGGAACAAGAAGTAACTTCAGGGGTAAAACGGTAAATTGACGCAGCTCTAGTTACAAACAACCTGTGAAGGATCGACTTACTAATCATGATCCGGGTACTAATCGAACCGGGTACTCAATTCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCCGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGTAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATGCTGGATATCTTACACGCAGACTTGTTGAAGTCGTTCAACACATTGTTGTACGTAGAACCGATTGTGGAACCATCCGAGGGATTTCAGTGAGTCCTGAAAATAAGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATATATATGGGCCCGCGATGCATTGGCATACGAAATCAAGATATTGGTATTGGACTTATCAATCGATTCATAACCTTTCAAACACAACCGATATCTATTCGGACTCCCTTTACTTGTAGGAGTACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTCGAATTGGGAGAAGCCGTAGGTATTATTGCGGGTCAATCTATTGGAGAACCGGGTACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGATGGCTAGTCCAAGATGCTGAACAACAAATGGACAGAAATATATCTATAGTGAGGTTAGTGCAACTACAAGACTATAGTGGAGTGTTCTAGTAGTTAACGAATGTTGGTTAACAAGGTTAATGAGTTTAGCCGGTTAATCTTGGATCGTTGGAGCCCATGATCTATAGGTCTATTAGGTCCCTCTGCTAACTCATATCGGACTAAACCATAGAATAGTGTGACGAGTGAGTTCGAAGTGTTCTCATTCAAATTAGGGAATATGCGCTACATATATATGATATATTTAATCGCATTTTTGTTTTATTTACGAATTAAACAAAAAGAGAGAATCTGATATATTTAAATAAGATTTAAATATCTTAATCAATTATGTGTCGGAATTGATTGGGATTGACATTTGAATTAATATTAAATATTAATTAAATAGTTTAATTAATTATTTAATGTTACTTTAATTTGAAATTCATTATTCAAATTAATTGTTGAATTAAAATGAAGAAAGTCAAAATGTTGACTCCATTTAATGGAAAAATCCATGTTAGTGGAATTTTGAGGTGTCAAAATTTGGTTTAACCAAACTTGCATGCTTGCCAAATAAACCCCACAAATTTGAGTGGAATTTTGAGTGTCAAAATTTGGTTAACTCAAACATGCATGCTTGCCACATAATCCCAAACATTTTAGTGGAATTTTAAGTGTCAAAATTCGGTGATCTCAAATTTGCATGAACATGCAAACATGACTCTTTAAATAGAGCGATCATGTGTAACGACCCAAAATTTTCTACTTAATTTAAGGTCGCTACTGTATACGTACCATAAACATTGAATGCGTAAAACTTCATTTAAATTCCATAAAACATAACTTTTAACTTAAAACACAGCCATGAACTTACGTGTTTCGAAAACATCTTTAAAACGACACAACAAAAGACTCGAAATAAAATAAACAAGCGTTTAAGTTTAAAACATCCTATTTTGTCCTTAGTCTAAGAAAATAAATACCATTATCCTATGCATGTGCCATGATCTCGAGTTGTGATGCCGTCGTCAGCCGTACAGGAATGCCTTGCCTTAACCTGAAAAATGTAGTAGCACATGGCTTAAGTATTTAAAGAAATACTCAGTAAGTGACCCCACTATTGGGGTTAAATGCAACAATCACATGCAATGAAATGATGAGACCTATCTTTCATTTCGTTTTGTTCCGTTTCATTTCATTTCGTTTCGTTTCGTTTTCCCTACGGTGTAATCCTAACAGGTAATTGTGGACGTGTACCATATACTCTACACGCAGCCCATACGTGCGAGTATGGGCTCACCAGCTAGTTCACACACTGTTGGGCCACTGTCCCTAGCCGGTGGGCATGCTCTGGAGGCCCACTGGGACCCGTTAAAACTAAAACCGTCACGGCAGCGCTATGCAAGGCATAACGATCGTTGTCCTGCCATTTGGATGTACACGTCCGTACCCTTGTGATGGGATAGGGGTATCCCCCCAAATGCATGATCACACAATATGCATGAGATCCCACTAATCCTACAGTCATCATTTAATGAACATAACCCCGTGTCACGTTTTCATGCTTACATGTCATTCTCATTCTCATTTCGTTACATATCATACATATTCCTAGCGGGGTTATGTATCATGCAATTTACCGTATTTCATGTCATACAATTCATTCAGTTACATTTCAATACTCATACAACAAGCCATAATCGTACAAGGGCCACACCTCGTCACATGTATTCATATCACATCAACTAAGCAGCATAAATAACATACATTCACGTTCACATGATTTCGTACTTAAGCACAATAATCTAGCATACAATGTATCATATCATAACCAAGTCAATAACGTAAACACTTCATAGTCATATCATTTTCTAACTTACCATATCCTTAACGTTCTTATACCTATCACAGACATATCATTACGTGACGTACCTTAGTCATATCATCACAAGAACGTACCCTAATGCTATCGTTCCATCAATCTATCACAAACTTATCCCTTTCTACCCATAACCAAATCGTATTCTTTCATCAATCTCTCCTATCCATAACACTCCGGTATGTAACCTAACTCTAACGTTTCATGAACGTATCTTACTCCTATCGTTACATTTCGTTTTGTGCATCCTTCTCGTATCCTATCTCAAACATCTCCTAGAGCACATCGTACCATAATTATTATCATACAATCCACGTATTATAACATAACATAACATATAGGAAGCATATCGATCCACAGACAATTCACACATATCAATATATATGACACGTGCCGAACCATAGGGCACGTATCAACATCAACTATAACCATGCCAATAGTAAGGTCACTTACCTGACTAGCTTAAGTCGTTGTCACAAATATATCTTTAATGAAAGTTCGATTTCGTCCTTTGAAATCCGAGTCAACCTATATGAGTTCATGACATCAGTTTCAAGTTGAACTGTAACGACCCTAAATTTCCACATACTCAGAGTCGCTACTAACGTCTCATGCTCATCTATAATGCGGAAATATAACTCTTACATGAACATAATTGATAGTGAAAATTTTCAAGAAAACGTTTAAAACAACTTCTCCTCTGAAAAACACTGCCATGGTCTTACGTGTTTAAATATGAAATACTGAAATTTAGAGAAACAAAAACAAATACAAAATAATTTAAAACAACGAAATGCAAAACAACCTATTCTAACTTAAGACTAGAAATTTAAATATGAGTCTACCCTATGCACGTGCCACAGTCTCTGCTCGCGATGCCGCCGTCCTCCGTACAAATGCGCCTTGCCTTTACCTGAAAAATGATGTGGCACACGGCCTGAGTATTTCAAAGAATACTCAGTAAGTGACCCCACTATAGGGGGCCATGCAAATGCAAACACATGCAATCATGATTTAGGGACCTATCTCTAATCATCTTAGGGGTGGCCTCCAGTCTCGGATAAATTGGATGTGTAGTACTTCCCTACACACGACTCACACGTGCGAGTGTGAGTCCCCAGGGCGCTCGCACACCCCCTGGACCCTCTGGTCAAGCTAATCTGTAGCGACGTCCGGAGGTCAGCGGAACCCCATAGTGTCATGCGCCTCATGAACACCCTCATCTGTGTGCTTTCGCACCTGTGCGCATTCGCGCTCATCATAAGGTGCGCGTCCGCACTCATCATCTCTAGGGGAAGTAGCCCTATGCTTATGAACATACAATATGCATGAGGTCCCTCTAAATCCATCATAATGTCTCTTCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGATTTATTTATTTATTTATTTTTATTATATGTATATATATTTTTTCCTTTCTTTCCCGGGTCGTTACATTATCTACCCCTAAAAAGAACTTTCGTCCTCGAAAGTCTCAAACTCTTGTAGCAACTCGGGGTATTTCTCTCTTATTTCGTCCTCACGCTCCCACGTGGCTTCCTTACTGTGGTGATTCCGCCACAGTACCTTAACGAACGCAATGCTCCTGTTGCGTAAGGTTTTTACTTCTCTAGCTAAGATTCTTATTGGTTTTTCCTCGTAGCTCAAATCTTCATTGAGCTGGAGTGGTTCGTAATCTATTACGTGGATAGGATCCGTGATGTACTTCCTCAGCATCGACAGGTGAAATACATCATGTACTCCTGAGAGGGCTGGAGGTAAGGCTAACTTATACGCTACCGGACCAACTCGCTCTAGGATCTCAAATGGTCCAATGAATTTAGGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATATGTAGCTTTCCCAGGTAGGAAGTGTGCTGACTTGGTCAACCTATCGACAACTACCCGATCATTGTATAGCCTTTAAGCGTTTTGGGTAATCCTACTATGAAGTCCATTGCTATGTTTTCCCACTTCCACTCTAGTATGCTTAGGGGCTGCAACAACCCCGCTGCCTTTTGTCTAGGAGCTTTCACTTGTTGACAAACTAAGCACTTGCTCACAAACTCGGCCACATCCCTCTTCATGCTCTTCCATCGAAAGTGTTGCTTTAAATTCATCTTTGTATCTCAAAGGTGCATGACAAATGGTGAGTTGTGACATTCGTTAGTATTTCTTTCCTTAGCTCCTCTGTTGTCGAGACATGTAGGCATCCCTGATACAATAGCCCTTCATCTGAGGTCTTTGAAAATCCATTACTAGACTCTCAACTAGCTGACTTAAGACTTTCTGTAGGTTTGGATCCTCTCGTTGGGAGGTAACCATTCTTTGCCTAAGTGTAGGTTGCACTGTAAGTCGGGCCAGTTGTGCCATGACTCTCTCGGTCGCTACAACTATGATGGCTCCATCAAATTTTCTTTGTACCCTTACTTCCCTCGTAATGAGGGCCGAAGAGTGGGCCACCTTTCTACTCAAAGCGTCTGCGACCCCATTTGCTTTTCCAGGGTGGTACTGGATATCTACATCGTAGTCCTTCACCAATTCTAACCACCTTCTCTGTCTCATATTTAACTCTTTCTAGGTGAAGAAATATTTAAAATCTTGTGGTCGATTAAACTTTGAATTTCCTCTTCATACAGATAGTGTCACCAAATTTTCGGCGCGAACACTACAGCGGCCAACTCCAGATCGTGGGTAGGGTAAGTTATCTTCGTATTCTTTTAGTTGACGGGAAGCGTATGCAACAACTTTAACGTGTTGCATTAACATCCCAGTCCATTCTTTGAAGGCATCGTTATAGACTACGTACTCTTCTAAGATCTTGGGAACCGTGAATACCGGGACGGTTACCAACCTCTATTTTAGGTTTTGAAAGCTTGCCTCACCAGCATCATTTCATATAAATGGTACCCCTTTTCTCGTTAGCTGTGTCAAAGGCGAGGCTATTCTAGCGAAGTCCTACACGAACCTTCGATAGTATCTCGCTAGTCCCAAGAAACTCTGTACTGATGTTACCGAATTGGGCGTTCCTACTTCGTGACCGCTTTGATCTTAGTAGGGTCTACAGATACTCCATCCTTTGTCGCCACGTATCCTAGGAAAGAGACTTATCTAACCAAAATTCACACTTTGAGAACTTGGCATACAACTTGTTCTCTATAAGGGTGGCTAGGACATTTTAGAGGTGTTCCTAGTGTACCAAGTTTGATTTCGAGTACACTAGGATGTCATCAATGAGCACGATCACAAAGGTGTCTAGACAGTCCTTGAACATTTGGTTCATTAACCCCGTTAACACAGCTGGAGCATTGGTGAGGCTAAATGACATATCACGAACTTATAGCGATCATACCTTGTCCTAAATGCTGTATTTGGATCATATTTTTTCTTTACCTTTTATTTAATGATAACCTGACCGCAGGTCTATCTTAGAAAGTATCGTCGCTTCTCCTAGTTGATCGAATAAGTCTTATATTCTAGGCAGAGGGTATTTGTTCTTTATGGTCCTCTTATTTACCTCTCTGTAATCGATGCACAAACGCATCGATCCATCTTTCTTCTGAACAAACAACACTGGCGCACCCTAGGGGAATATGCTAGGTCGAATGAACCCTTTTTCCCGTAGGTCTTGTAATTGTGCCTTTGAGTTCTTTCATCTCTGCTAGCACCATGTGATAAGGTGCTTTAGGAATAGGCCCAGTTCGCGGCTCGAGTTCGATGATGAAGTCGACCGCTCGAGAAGGGGGTATTCCTGGTAGGTCATCCGAATACACATTTGGGAACTCATTTACGATGGACATGTTTTCTAGGGTCTTTTCTTTCCCTCTACATCTATGGCACATGCTAATATAGTTCAACCGCCTTGTTGGACTAATCTCTTTGCTTTCATCATCGAGACTACCTTTGTGGTAGCCCCGGCATTTGTGCCTTTAAATTTAAAGCTAGGTCCCACCGATGGTGAGAATATCACCTTTTTTTTTTCCTTTTTGCGACATTCTATAATAGCATGGGTTGCAGCTAGTCAATCCATGCCTAGTACTACGTCGAAGTCGGTCATCTTTACTACTATTAGGACTACGCTTAGAGTTTGGTCGGCTACTATTGCTTGGTCATTCTTTTCTCTATCCTTAGTTACTACGTCTACCCTCTTAGGGCTGCTTGCCGACCATACATACAATAAGGGTTTTAATTCAAACCCTGTCTCTGATCCCTCTCGAAGTGGGCTCTCTTCAGCCTCACCTCGTCCTCTATTTCTAATAGGAGGTAGTCCCCTTCCTCGTCTTACTCTTTCGCATGGTCTAGGCAGCATGGTTCTAGAAACCAAGATATCATCTCTTAAATCTAAGGCTCATTACCTATGAAATTATGCTATGCATCACATCTACTAAGTTCAAATCATATTGCAAACAAAATCACTCATCATGCAACACATCACATCATGCTCTTACATAAATACGTGAAATATCAAAACAATTTCAGTAACATTAACATAAAAATGCATGCGAGTTTGAAAACGTTTCTCTTTTCTTATCTTGTGCAAGGCGTACCTGACAGTGACGGGGCATCGACGTTGGGACCATGGAACGTGCCAAGCCTACATTGTAGGCTAGTCTACAGAATCTAAAACCTAGAGCTCTGATACCAACTGTAACGACCCTAAATTTCCACATACTCAGAGTCGCTACTAACGTCTCATGCTCACCTATAATGCGGAAATAACTCTTACATGAACATAATTGATAACGTAAATTTAAAAAAAAAAACGTTTAAAACAACTTCTTCTCTGAAAAACACAGCCATGGTCTTACGTGTTTAAATATGAAATACTGAAATTTAGAGAAAACAAAAACAAATACAAAATAATTTAAAACAATGAAATGCAAAACAACCTATTCTAACTTAAGACTAGAAATTTAAATATGAGTCTACCCTATGCACGTGCCACAGTCTCTGCTCGCGATGCCGCCGTCCTCCGTACAAATGCGCCTTGCCTTTACCTGAAAAATGATGTGGCACACGGCCTGAGTATTTCAAAGAATACTCAGTAAGTGACCCCACTATAGGGGGCCATGCAAATGCAAACACATGCAATCATGATTTAGGGACCTATCTCTAATCATCTTAGGGGTGGCCTCCAGTCTCGGATAAATTGGATGTGTAGTACTTCCCTACACACGACTCACACGTGCGAGTGTGAGTCCCCAGGGCGCTCGCACACCCCCTGGACCCTCTGGTCAAGCTAATCTGTAGCGACGTCCGGAGGTCAGCGGAACCCCATAGTGTCATGCGCCTCATGAACACCCTCATCTGTGTGCTTTCGCACCTGTGCGCATTCGCGCTCATCATAAGGTGCGCGTCCGCACTCATCATCTCTAGGGGAAGTAGCCCTATGCTTATGAACATACAATATGCATGAGGTCCCTCTAAATCCATCATAATGTCTCTTCTGACACAACCCTCTAGTCTCATCTCTTTGTTACTCTAGGTAACACATACTCGTGGATATTTATATTAATATCATTTTCATGCTCTTAGGGTTGTGTCCTATGTCGATCTAACGACATGATGCAATATGGCACTCATCATCATATAGCATGCTCAATATGGAAAACATCATCATATTAAGGTAAACGTCACGCAATCATCATACTCATCATATTGCCACAAAGTGCATCAAACATATCAAGTACGACATTCATCAAAATATATAAATACTGAACACATCATCAGGTATCATAACCCACACACATCATCATAAGTCATACATCATCATAACTCATATACCGCATCATACGACATAGTTCATACAACATCGTAACTCATACAATTTTTAGCCTATCCTATAGTAAGGCCACTTACTTGGTTGGCCTTGGCCGAAGTACTCCCTAAATCGCTAAACGTAAGCTCCCGTTCCGTGAGAGCCGCTCCCTACGTCCCCGGGGTTTGTTTCCTTAATCGGGGCCGAAAACAGATTCGGGAGGGTCGGAACAGTGGAAACCGGGTTGAAAACAGGTGAGCCGAGCCGAACAGCCGCTGGAGCCGCCGGAGCGTCGCCGGAGGAGCCGCCGGAGGGAGCCCGAGCCGTTTGCGCCGAGCCGAGCCGAGGGACTGCCTGCGCCGTTGAGTGACACGTGGCCGTAGCAGAGAAAGCCACGTCGGGCGGCAGTGTCGGGTCGAAGCGCGGGTCGCAGCCCGGTTCGGGTCGTGGTTCGGGTCGTGGGCTGTGGAGGCTACTGGGCCAAGACTAATCGTTGGGCCTCGGCTTACTGGGCTGGGCCGAAGGAGTTTGGTTTGCAGGCCGGCTCAATTGGACCGTGGGTCTGGTCTGGGTTGGTTCAACTGAACCGTAGCTTCTGGGCCGGTTTGAGGTTTGGGCCGCTGAAGTTGGGCTGGGCCGAAGGCAGAGGCCAAGGGAGGAACGGGCTGGCTCTCCCGGGTTCTGGGTTCGGGTTGACCCGGATCCGTGGATCTCGTCTTCCTTACCCGACTTCGGCCGATTTTCCGGCGAGCTTTCTCTCTCTTTCTCGCGGCGTTTCCGTTGCTGATTTCGGTCCTCTTCCTTCCCTTTTCCTCTTTGTTCGTCGTCCTTCCTTCTTTTCTGGGAGTTTTGCGGCCTAAAAGCTCCTAAAAGCCATAGATCTAAGAATCGATTAAGAAACCTAATCTTTCCGACCTCGGTTACCGACGACGACGCTTAGGAGATAACACAAAACGCACCGTGAGTTATTGTGCTTTCGTTAGGGATCCCTCTTATGGTGGTAACAGGTCGTTTGGTGTTAGTTTGAGGGTGGTTTGAGGGCTCGTCGGAGAAACTGGACACTCGCCGACGTTCGTCCGAAATCTCTCTCTCTCTCTCCAAATTTTCTCTTTTCTCCCTTTGCAGGTGTCCTGAAACTTTGCAGGGTGTCGTGGGTTGAGGGTGGGCGTGCTGTGGCCGTCGTTTCGCGTGGGTTCCGCGAAACTCGGCGGTCGCCGGAAAACTCGCGGGTTTTCCGGCGACTGAGTTTTTTTTTTTTTTTTTTTTTTTACTTTATTTGATTTATTTATTTATTTATTTTTATTATATGTATATATATTTTTTCCTTTCTTTCCCGGGTCGTTACATGAACTCTATAAAATTATTTCTCTAATTTAGATTGGCCATCGTAAAATTCTGATATTTCGTGTTAGCCAAAATTTAAAGGAGCTCACTGCTCTCTGATATTTCCTGTTTTACTATTAAATCCTGTTCAACAAATCTTTCCTCTTCTTCGGTAATTATTTTTAAGCAGATATTATTCAATTTCGTTAATCTATTCCTACTTCCAAATCTTCCCTTTTTATTTTTATTATTATTTTTCTTTTCAGTTAACAGTGTTATGTATTTCGATCTCTATCTCATTTTTTTTTCTTTTTTCCTTTGTCTTCTTTCTGATTGAGTTAACAATTATATTGTTAACTTTTAATTTAATCGATTCATTTGGTTATATTCTTTTCCTATAATTCATATAAAATTACAACCTAAATCATTGCAACAATTTAGTAGATCTAAAATATAATTGGTTTTGATTTCCTAAAAATGCTTTTCATTTAATCTCTAATTCAAAACTAAATAATTGTAACAAAATTAATATTATTTAATAAAATAAAAGGAAGATTTAACATACTGACCTCCTCAAATGACATATCTCCTCGACGGAGCTAGTCTGCTTAAACCTTTTGTTTTCTTTTTCTATTTGTTTATGTAGGAAGGAAGAATTCTCTGTAAATCTGCAGTTGTTTTTACAGAAAAGAGATTCGTGATTTGTTGCCAGATTTATTTTTAGGGAAGGAGTGGTGAGAGATTGAAGGAAGGAGGAGGGATCGGTTACCAAATGTTTTTCTTCTTTTAATTTTTATTTATTATTTTATTATTTTAACTATTTTTTTTTATAATTATTTTTATTTGTTTATTTCTTTATTTATTTTTTGGCTATTACATCATGATACATGGAAGGTCTTCTTCTTCTTGGTGAAAAACCTTGAGAAAAACCTCTCACAAATACTCTCTTCACATATACAAAATCCCTCCCAAGTTTAGTCACTCACCGGATTCCACAATCCCGTTCTAAGGCAGGAGGATAGTAGAGAAGACACTAGTGGTGGTTCGAAACCGGTTTGTGAGGAAAAAGAAGTTTGAACTACAAAATGTTATATTTAAACTCATTAAGTTTTAATACTTATGAATGAACATGCTAGTTATTTACTATAATTGATGTTCTAAAAGTGCCTAAGATCCAAATTGCTTCCGCATGTGTTATATTAACACCAACAGTCTGGGTGTGGTTGAGGCAACTTTGAGTTCCTTCCCTCGGTCTGCAACACAATTTTTCCGTCTATTGGTCAGCTCGAACGAGACCATCTTAGCCCTCAATTTCTTCATCAAACACGTTCCATTTGGTCCCCTCAAGCTATTGAAAACATCAATTTAGGGCATTAAGGGTCATAAGTAAGAATTCGAATTTCTTCCCTAAAACGTACCGATATCAAATTTCTTCGATTACGCTTGTTCTTAAGGTTGTCTTCCTTTGAGGCCTTTTTTGAAAATGATCTTTAGATGTGTAGAAATTGATTGGGATAGGATTTTTCCGTCGAAAATGTCAATAACTTCGAATTGAATTTCAAGCTTTTCTTGGAGTTTCTTTAATAGTGGACAGAGTTAGGGGAATATGATAGGGGCACTTTTGAAGCGTCCTTCACCAAACCTCCAGGTAATCCTCTTTAGAATGTATAGGAACATGTTTGATTGAAAAAGATGGATTGTAGCTTCCGAATTTGGAGAATATCTGAGGATACAATAACCCAAAATCTCAACGCTCTTAACACTCGATTCTTATTCCTATTTAATTTTTGATGCATTGGAATGCTCCACGCCACGTCCAGAATCATCATCACAATTTCTTCCTTGAGTTTTGTGGTTGTGGCGTATTGTGCAGGCGATCAGATTTCGGGCATTTCTTTCTTATTTTGCGCCCCTTTCATGAGAACATTCGAACTTGTATCTTGTATAGATCTTTGA

mRNA sequence

ATGTTTGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCCGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGTAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATGCTGGATATCTTACACGCAGACTTGTTGAAGTCGTTCAACACATTGTTGTACGTAGAACCGATTGTGGAACCATCCGAGGGATTTCAGTGAGTCCTGAAAATAAGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATATATATGGGCCCGCGATGCATTGGCATACGAAATCAAGATATTGGTATTGGACTTATCAATCGATTCATAACCTTTCAAACACAACCGATATCTATTCGGACTCCCTTTACTTGTAGGAGTACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTCGAATTGGGAGAAGCCGTAGGTATTATTGCGGGTCAATCTATTGGAGAACCGGGCGATCAGATTTCGGGCATTTCTTTCTTATTTTGCGCCCCTTTCATGAGAACATTCGAACTTGTATCTTGTATAGATCTTTGA

Coding sequence (CDS)

ATGTTTGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCCGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGTAAAGGAGTTGTGGATACTGCTGTACGAACATCGGATGCTGGATATCTTACACGCAGACTTGTTGAAGTCGTTCAACACATTGTTGTACGTAGAACCGATTGTGGAACCATCCGAGGGATTTCAGTGAGTCCTGAAAATAAGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATATATATGGGCCCGCGATGCATTGGCATACGAAATCAAGATATTGGTATTGGACTTATCAATCGATTCATAACCTTTCAAACACAACCGATATCTATTCGGACTCCCTTTACTTGTAGGAGTACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTCGAATTGGGAGAAGCCGTAGGTATTATTGCGGGTCAATCTATTGGAGAACCGGGCGATCAGATTTCGGGCATTTCTTTCTTATTTTGCGCCCCTTTCATGAGAACATTCGAACTTGTATCTTGTATAGATCTTTGA

Protein sequence

MFVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGDQISGISFLFCAPFMRTFELVSCIDL

Homology

[Close]

BLAST of CmoCh10G011200 vs. ExPASy Swiss-Prot
Match: Q4VZP3 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 2.4e-148
Identity = 256/263 (97.34%), Postives = 260/263 (98.86%), Query Frame = 0


Query: 3   VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 62
           VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM
Sbjct: 76  VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 135

Query: 63  SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 122
           SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD
Sbjct: 136 SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 195

Query: 123 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD 182
           TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGI VSP N+MIPERIFIQTLIGRVLAD
Sbjct: 196 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIFIQTLIGRVLAD 255

Query: 183 DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 242
           DIYMGPRCIG+RNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL
Sbjct: 256 DIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 315

Query: 243 VELGEAVGIIAGQSIGEPGDQIS 266
           VELGEAVGIIAGQSIGEPG Q++
Sbjct: 316 VELGEAVGIIAGQSIGEPGTQLT 338

[Close]

BLAST of CmoCh10G011200 vs. ExPASy Swiss-Prot
Match: Q49L08 (DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 521.9 bits (1343), Expect = 4.5e-147
Identity = 252/263 (95.82%), Postives = 259/263 (98.48%), Query Frame = 0


Query: 3   VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 62
           VQDAEQQSLILEKHHHYGNVHAVEKLRQSIE+WYATSEYLRQEMNPNFRMTDPFNPVHIM
Sbjct: 76  VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIM 135

Query: 63  SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 122
           SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD
Sbjct: 136 SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 195

Query: 123 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD 182
           TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRG+SVSP N M+PERIFIQTLIGRVLAD
Sbjct: 196 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGVSVSPRNGMMPERIFIQTLIGRVLAD 255

Query: 183 DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 242
           DIYMGPRCI IRNQDIGIGL+NRFITF+TQPISIRTPFTCRSTSWICRLCYGRSPTHGDL
Sbjct: 256 DIYMGPRCIAIRNQDIGIGLVNRFITFRTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 315

Query: 243 VELGEAVGIIAGQSIGEPGDQIS 266
           VELGEAVGIIAGQSIGEPG Q++
Sbjct: 316 VELGEAVGIIAGQSIGEPGTQLT 338

[Close]

BLAST of CmoCh10G011200 vs. ExPASy Swiss-Prot
Match: B1A925 (DNA-directed RNA polymerase subunit beta'' OS=Carica papaya OX=3649 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 517.7 bits (1332), Expect = 8.4e-146
Identity = 251/263 (95.44%), Postives = 259/263 (98.48%), Query Frame = 0


Query: 3   VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 62
           VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR+TDPFNPVHIM
Sbjct: 72  VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRVTDPFNPVHIM 131

Query: 63  SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 122
           SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD
Sbjct: 132 SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 191

Query: 123 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD 182
           TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP+N+ +PERIFIQTLIGRVLAD
Sbjct: 192 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPKNRTMPERIFIQTLIGRVLAD 251

Query: 183 DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 242
           DIYMGPRCI IRNQDIGIGL+NRFITF+TQ ISIRTPFTCRSTSWICRLCYGRSPTHGDL
Sbjct: 252 DIYMGPRCIAIRNQDIGIGLVNRFITFRTQSISIRTPFTCRSTSWICRLCYGRSPTHGDL 311

Query: 243 VELGEAVGIIAGQSIGEPGDQIS 266
           VELGEAVGIIAGQSIGEPG Q++
Sbjct: 312 VELGEAVGIIAGQSIGEPGTQLT 334

[Close]

BLAST of CmoCh10G011200 vs. ExPASy Swiss-Prot
Match: Q3C1G9 (DNA-directed RNA polymerase subunit beta'' OS=Nicotiana sylvestris OX=4096 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 516.9 bits (1330), Expect = 1.4e-145
Identity = 251/263 (95.44%), Postives = 256/263 (97.34%), Query Frame = 0


Query: 3   VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 62
           VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM
Sbjct: 76  VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 135

Query: 63  SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 122
           SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD
Sbjct: 136 SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 195

Query: 123 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD 182
           TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT RGISVSP N M+PERIFIQTLIGRVLAD
Sbjct: 196 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMMPERIFIQTLIGRVLAD 255

Query: 183 DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 242
           DIYMGPRCI  RNQDIGIGL+NRFITF+ QPISIRTPFTCRSTSWICRLCYGRSPTHGDL
Sbjct: 256 DIYMGPRCIATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 315

Query: 243 VELGEAVGIIAGQSIGEPGDQIS 266
           VELGEAVGIIAGQSIGEPG Q++
Sbjct: 316 VELGEAVGIIAGQSIGEPGTQLT 338

[Close]

BLAST of CmoCh10G011200 vs. ExPASy Swiss-Prot
Match: P38550 (DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tabacum OX=4097 GN=rpoC2 PE=3 SV=2)

HSP 1 Score: 516.9 bits (1330), Expect = 1.4e-145
Identity = 251/263 (95.44%), Postives = 256/263 (97.34%), Query Frame = 0


Query: 3   VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 62
           VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM
Sbjct: 76  VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 135

Query: 63  SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 122
           SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD
Sbjct: 136 SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 195

Query: 123 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD 182
           TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT RGISVSP N M+PERIFIQTLIGRVLAD
Sbjct: 196 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMMPERIFIQTLIGRVLAD 255

Query: 183 DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 242
           DIYMGPRCI  RNQDIGIGL+NRFITF+ QPISIRTPFTCRSTSWICRLCYGRSPTHGDL
Sbjct: 256 DIYMGPRCIATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 315

Query: 243 VELGEAVGIIAGQSIGEPGDQIS 266
           VELGEAVGIIAGQSIGEPG Q++
Sbjct: 316 VELGEAVGIIAGQSIGEPGTQLT 338

[Close]

BLAST of CmoCh10G011200 vs. ExPASy TrEMBL
Match: A0A0S2IDT9 (DNA-directed RNA polymerase OS=Cucurbita argyrosperma OX=34294 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 532.7 bits (1371), Expect = 9.3e-148
Identity = 260/263 (98.86%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 3   VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 62
           VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM
Sbjct: 76  VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 135

Query: 63  SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 122
           SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD
Sbjct: 136 SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 195

Query: 123 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD 182
           TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD
Sbjct: 196 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD 255

Query: 183 DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 242
           DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL
Sbjct: 256 DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 315

Query: 243 VELGEAVGIIAGQSIGEPGDQIS 266
           VELGEAVGIIAGQSIGEPG Q++
Sbjct: 316 VELGEAVGIIAGQSIGEPGTQLT 338

[Close]

BLAST of CmoCh10G011200 vs. ExPASy TrEMBL
Match: A0A2H4T1Y3 (DNA-directed RNA polymerase subunit beta'' OS=Cucurbita maxima OX=3661 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 532.7 bits (1371), Expect = 9.3e-148
Identity = 260/263 (98.86%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 3   VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 62
           VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM
Sbjct: 72  VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 131

Query: 63  SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 122
           SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD
Sbjct: 132 SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 191

Query: 123 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD 182
           TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD
Sbjct: 192 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD 251

Query: 183 DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 242
           DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL
Sbjct: 252 DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 311

Query: 243 VELGEAVGIIAGQSIGEPGDQIS 266
           VELGEAVGIIAGQSIGEPG Q++
Sbjct: 312 VELGEAVGIIAGQSIGEPGTQLT 334

[Close]

BLAST of CmoCh10G011200 vs. ExPASy TrEMBL
Match: A0A0S2IHI7 (DNA-directed RNA polymerase OS=Cucurbita pepo var. texana OX=37651 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 532.7 bits (1371), Expect = 9.3e-148
Identity = 260/263 (98.86%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 3   VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 62
           VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM
Sbjct: 76  VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 135

Query: 63  SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 122
           SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD
Sbjct: 136 SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 195

Query: 123 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD 182
           TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD
Sbjct: 196 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD 255

Query: 183 DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 242
           DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL
Sbjct: 256 DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 315

Query: 243 VELGEAVGIIAGQSIGEPGDQIS 266
           VELGEAVGIIAGQSIGEPG Q++
Sbjct: 316 VELGEAVGIIAGQSIGEPGTQLT 338

[Close]

BLAST of CmoCh10G011200 vs. ExPASy TrEMBL
Match: A0A0S2IFZ6 (DNA-directed RNA polymerase OS=Cucurbita pepo subsp. fraterna OX=37649 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 532.7 bits (1371), Expect = 9.3e-148
Identity = 260/263 (98.86%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 3   VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 62
           VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM
Sbjct: 76  VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 135

Query: 63  SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 122
           SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD
Sbjct: 136 SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 195

Query: 123 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD 182
           TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD
Sbjct: 196 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD 255

Query: 183 DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 242
           DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL
Sbjct: 256 DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 315

Query: 243 VELGEAVGIIAGQSIGEPGDQIS 266
           VELGEAVGIIAGQSIGEPG Q++
Sbjct: 316 VELGEAVGIIAGQSIGEPGTQLT 338

[Close]

BLAST of CmoCh10G011200 vs. ExPASy TrEMBL
Match: A0A0S2IDY7 (DNA-directed RNA polymerase OS=Cucurbita argyrosperma var. palmeri OX=1094860 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 532.7 bits (1371), Expect = 9.3e-148
Identity = 260/263 (98.86%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 3   VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 62
           VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM
Sbjct: 76  VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 135

Query: 63  SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 122
           SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD
Sbjct: 136 SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 195

Query: 123 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD 182
           TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD
Sbjct: 196 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD 255

Query: 183 DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 242
           DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL
Sbjct: 256 DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 315

Query: 243 VELGEAVGIIAGQSIGEPGDQIS 266
           VELGEAVGIIAGQSIGEPG Q++
Sbjct: 316 VELGEAVGIIAGQSIGEPGTQLT 338

[Close]

BLAST of CmoCh10G011200 vs. NCBI nr
Match: ALO22570.1 (RpoC2 [Cucurbita pepo subsp. fraterna] >ALO22633.1 RpoC2 [Cucurbita pepo subsp. ovifera] >ALO22679.1 RpoC2 [Cucurbita pepo var. ozarkana] >ALO22739.1 RpoC2 [Cucurbita pepo subsp. pepo] >ALO22839.1 RpoC2 [Cucurbita pepo var. texana])

HSP 1 Score: 532.7 bits (1371), Expect = 1.9e-147
Identity = 260/263 (98.86%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 3   VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 62
           VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM
Sbjct: 76  VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 135

Query: 63  SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 122
           SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD
Sbjct: 136 SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 195

Query: 123 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD 182
           TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD
Sbjct: 196 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD 255

Query: 183 DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 242
           DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL
Sbjct: 256 DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 315

Query: 243 VELGEAVGIIAGQSIGEPGDQIS 266
           VELGEAVGIIAGQSIGEPG Q++
Sbjct: 316 VELGEAVGIIAGQSIGEPGTQLT 338

[Close]

BLAST of CmoCh10G011200 vs. NCBI nr
Match: ALO21718.1 (RpoC2 [Cucurbita argyrosperma] >ALO21790.1 RpoC2 [Cucurbita argyrosperma var. palmeri] >ALO21854.1 RpoC2 [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 532.7 bits (1371), Expect = 1.9e-147
Identity = 260/263 (98.86%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 3   VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 62
           VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM
Sbjct: 76  VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 135

Query: 63  SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 122
           SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD
Sbjct: 136 SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 195

Query: 123 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD 182
           TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD
Sbjct: 196 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD 255

Query: 183 DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 242
           DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL
Sbjct: 256 DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 315

Query: 243 VELGEAVGIIAGQSIGEPGDQIS 266
           VELGEAVGIIAGQSIGEPG Q++
Sbjct: 316 VELGEAVGIIAGQSIGEPGTQLT 338

[Close]

BLAST of CmoCh10G011200 vs. NCBI nr
Match: ALO22384.1 (RpoC2 [Cucurbita moschata])

HSP 1 Score: 532.7 bits (1371), Expect = 1.9e-147
Identity = 260/263 (98.86%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 3   VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 62
           VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM
Sbjct: 76  VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 135

Query: 63  SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 122
           SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD
Sbjct: 136 SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 195

Query: 123 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD 182
           TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD
Sbjct: 196 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD 255

Query: 183 DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 242
           DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL
Sbjct: 256 DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 315

Query: 243 VELGEAVGIIAGQSIGEPGDQIS 266
           VELGEAVGIIAGQSIGEPG Q++
Sbjct: 316 VELGEAVGIIAGQSIGEPGTQLT 338

[Close]

BLAST of CmoCh10G011200 vs. NCBI nr
Match: YP_009447525.1 (RNA polymerase beta'' subunit [Cucurbita moschata] >ATY69966.1 RNA polymerase beta'' subunit [Cucurbita moschata])

HSP 1 Score: 532.7 bits (1371), Expect = 1.9e-147
Identity = 260/263 (98.86%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 3   VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 62
           VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM
Sbjct: 72  VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 131

Query: 63  SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 122
           SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD
Sbjct: 132 SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 191

Query: 123 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD 182
           TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD
Sbjct: 192 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD 251

Query: 183 DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 242
           DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL
Sbjct: 252 DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 311

Query: 243 VELGEAVGIIAGQSIGEPGDQIS 266
           VELGEAVGIIAGQSIGEPG Q++
Sbjct: 312 VELGEAVGIIAGQSIGEPGTQLT 334

[Close]

BLAST of CmoCh10G011200 vs. NCBI nr
Match: YP_009505070.1 (RNA polymerase beta'' subunit [Cucurbita pepo] >AWX90360.1 RNA polymerase beta'' subunit [Cucurbita pepo])

HSP 1 Score: 532.7 bits (1371), Expect = 1.9e-147
Identity = 260/263 (98.86%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 3   VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 62
           VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM
Sbjct: 72  VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 131

Query: 63  SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 122
           SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD
Sbjct: 132 SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 191

Query: 123 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD 182
           TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD
Sbjct: 192 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENKMIPERIFIQTLIGRVLAD 251

Query: 183 DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 242
           DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL
Sbjct: 252 DIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDL 311

Query: 243 VELGEAVGIIAGQSIGEPGDQIS 266
           VELGEAVGIIAGQSIGEPG Q++
Sbjct: 312 VELGEAVGIIAGQSIGEPGTQLT 334

[Close]

BLAST of CmoCh10G011200 vs. TAIR 10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 500.0 bits (1286), Expect = 1.3e-141
Identity = 245/265 (92.45%), Postives = 253/265 (95.47%), Query Frame = 0


Query: 3   VQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIM 62
           VQDAEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVH+M
Sbjct: 72  VQDAEQQSWILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHMM 131

Query: 63  SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 122
           SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD
Sbjct: 132 SFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVD 191

Query: 123 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPENK--MIPERIFIQTLIGRVL 182
           TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP NK  M+ ERIFIQTLIGRVL
Sbjct: 192 TAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNKNRMMSERIFIQTLIGRVL 251

Query: 183 ADDIYMGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHG 242
           ADDIY+G RC+  RNQD+GIGL+NR ITF TQ ISIRTPFTCRSTSWICRLCYGRSPTHG
Sbjct: 252 ADDIYIGSRCVAFRNQDLGIGLVNRLITFGTQSISIRTPFTCRSTSWICRLCYGRSPTHG 311

Query: 243 DLVELGEAVGIIAGQSIGEPGDQIS 266
           DLVELGEAVGIIAGQSIGEPG Q++
Sbjct: 312 DLVELGEAVGIIAGQSIGEPGTQLT 336

[Close]

BLAST of CmoCh10G011200 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 62.8 bits (151), Expect = 5.3e-10
Identity = 65/248 (26.21%), Postives = 104/248 (41.94%), Query Frame = 0


Query: 57   NPVHIMSFSGARG---NASQVHQLVGMRGLMSDPQGQMID---LP--------------I 116
            N + +M+ SGA+G   N  Q+   +G + L      +M+    LP              I
Sbjct: 936  NCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFI 995

Query: 117  QSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDC----- 176
                  GL   EY   C   R+G+VDTAV+TS +GYL R L++ ++ + V   DC     
Sbjct: 996  SDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKV-NYDCTVRDA 1055

Query: 177  -GTIRGISVSPENKMIPERIFIQTLIGRVLADDIYMGPRCIGIRNQDIGIGLINRFITFQ 236
             G+I       +   +    FI+      +  D+ +  +C    ++D+  G  +      
Sbjct: 1056 DGSIIQFQYGEDGVDVHRSSFIEKFKELTINQDMVL-QKC----SEDMLSGASS---YIS 1115

Query: 237  TQPISIR---------TPFTCRSTSWICR----LCYGRSPTHGDLVELGEAVGIIAGQSI 266
              PIS++          P   R  S   R    L   +S     L + GE VG++A QS+
Sbjct: 1116 DLPISLKKGAEKFVEAMPMNERIASKFVRQEELLKLVKSKFFASLAQPGEPVGVLAAQSV 1174

[Close]

BLAST of CmoCh10G011200 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 50.8 bits (120), Expect = 2.1e-06
Identity = 23/60 (38.33%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 96  IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 155
           ++++   GL+  E+     G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V+    GT+R
Sbjct: 819 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 876

[Close]

BLAST of CmoCh10G011200 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 48.9 bits (115), Expect = 7.9e-06
Identity = 22/63 (34.92%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 96  IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 155
           + ++   GL+ TE+     G R+G+VDTAV+T+  GY++RRL++ ++ ++V   +  T+R
Sbjct: 835 VANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDN--TVR 894

Query: 156 GIS 159
             S
Sbjct: 895 NAS 895

[Close]

BLAST of CmoCh10G011200 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 48.9 bits (115), Expect = 7.9e-06
Identity = 22/63 (34.92%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 96  IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 155
           + ++   GL+ TE+     G R+G+VDTAV+T+  GY++RRL++ ++ ++V   +  T+R
Sbjct: 852 VANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDN--TVR 911

Query: 156 GIS 159
             S
Sbjct: 912 NAS 912

The following BLAST results are available for this feature:

BLAST of CmoCh10G011200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP3	2.4e-148	97.34	DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 P...	[more]
Q49L08	4.5e-147	95.82	DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulu...	[more]
B1A925	8.4e-146	95.44	DNA-directed RNA polymerase subunit beta'' OS=Carica papaya OX=3649 GN=rpoC2 PE=...	[more]
Q3C1G9	1.4e-145	95.44	DNA-directed RNA polymerase subunit beta'' OS=Nicotiana sylvestris OX=4096 GN=rp...	[more]
P38550	1.4e-145	95.44	DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tabacum OX=4097 GN=rpoC2...	[more]

BLAST of CmoCh10G011200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0S2IDT9	9.3e-148	98.86	DNA-directed RNA polymerase OS=Cucurbita argyrosperma OX=34294 GN=rpoC2 PE=3 SV=...	[more]
A0A2H4T1Y3	9.3e-148	98.86	DNA-directed RNA polymerase subunit beta'' OS=Cucurbita maxima OX=3661 GN=rpoC2 ...	[more]
A0A0S2IHI7	9.3e-148	98.86	DNA-directed RNA polymerase OS=Cucurbita pepo var. texana OX=37651 GN=rpoC2 PE=3...	[more]
A0A0S2IFZ6	9.3e-148	98.86	DNA-directed RNA polymerase OS=Cucurbita pepo subsp. fraterna OX=37649 GN=rpoC2 ...	[more]
A0A0S2IDY7	9.3e-148	98.86	DNA-directed RNA polymerase OS=Cucurbita argyrosperma var. palmeri OX=1094860 GN...	[more]

BLAST of CmoCh10G011200 vs. NCBI nr


Match Name	E-value	Identity	Description
ALO22570.1	1.9e-147	98.86	RpoC2 [Cucurbita pepo subsp. fraterna] >ALO22633.1 RpoC2 [Cucurbita pepo subsp. ...	[more]
ALO21718.1	1.9e-147	98.86	RpoC2 [Cucurbita argyrosperma] >ALO21790.1 RpoC2 [Cucurbita argyrosperma var. pa...	[more]
ALO22384.1	1.9e-147	98.86	RpoC2 [Cucurbita moschata]	[more]
YP_009447525.1	1.9e-147	98.86	RNA polymerase beta'' subunit [Cucurbita moschata] >ATY69966.1 RNA polymerase be...	[more]
YP_009505070.1	1.9e-147	98.86	RNA polymerase beta'' subunit [Cucurbita pepo] >AWX90360.1 RNA polymerase beta''...	[more]

BLAST of CmoCh10G011200 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00170.1	1.3e-141	92.45	DNA-directed RNA polymerase family protein	[more]
AT3G57660.1	5.3e-10	26.21	nuclear RNA polymerase A1	[more]
AT4G35800.1	2.1e-06	38.33	RNA polymerase II large subunit	[more]
AT5G60040.1	7.9e-06	34.92	nuclear RNA polymerase C1	[more]
AT5G60040.2	7.9e-06	34.92	nuclear RNA polymerase C1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 103..265 e-value: 9.0E-31 score: 107.3
IPR007083	RNA polymerase Rpb1, domain 4	PFAM	PF05000	RNA_pol_Rpb1_4	coord: 26..88 e-value: 5.2E-11 score: 42.4
IPR038120	RNA polymerase Rpb1, funnel domain superfamily	GENE3D	1.10.132.30		coord: 1..127 e-value: 1.9E-44 score: 153.1
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 3..268
None	No IPR available	PANTHER	PTHR19376:SF47	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''	coord: 3..268
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 2..264

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G011200.1	CmoCh10G011200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009536	plastid
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046872	metal ion binding