CmoCh10G011110 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh10G011110
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	30S ribosomal protein S2, chloroplastic
Location	Cmo_Chr10: 6997622 .. 7000155 (+)
RNA-Seq Expression	CmoCh10G011110
Synteny	CmoCh10G011110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCACCTTCTATGGATTTTACTACATTACTTATCTTATGAAGCTTGTGAACATCATAATACTTCCATGGATACCTTCGCGACTATTGCTCGACATTTGTTAGGCAAAGTCGCCGATCTCAAGCACATGGCTCGCTGCTGTGACAACTTACTCAATGGCAACTTAGACTTAAAAAAATTTGTCAAGCTAATCCATGTTAATCGTGTTGGTATTGCTCATTTTGATGGTTCTAATAGTTTGCTGAAGGCTTCTGTTTAGGCCAAGATGAAGGCCAACTTCAATATTTAGCCACATATATGCCAGGGCCTTTTGTATGGATTGTCTCGCCCAATTCGATCATTCCGACGACTTGTCGCAATTGTTGACCCATCTGCACCAATACACATGCTCAGATGCTTTGACACAATATCTAACACTCAAAAGTGATTATAAATCTAAAATTATTAATACTCAAAGAAGACAATACAGAGAAAACTGAAATACGAAGTGTTGTATTGTAGTTGTAGTTTACTAACAGTAAGACTTCTATTTAAACTGAAATAACTCCTATAAAGACTCAACTGATTTGCACACAACGACTTATGCAACTAATTTATTTGCAGAAATAAAGCTAACAGACTCCTAATAAAAATGAATTAAGTCAAACTAACAATAAACTACATTAAATTCTGACAACCTCCCTTATTGCAAGCTTATTTCTCAATAACTCCGAGGACGTTATGAAAAACTTCAAACTTCACTTTGCCGAGTGCCTTAGTAAATATGTCTGCAACTTGCTCATTAGTATGTATTTTCTACAATTCAACATCATATGATAACACTTTCCCTCGAACAAAATGATAATAAGTTTCAATATGTTTCGAACGAGCATGAAACACCAGATTTCCAGCAAGTTTTAATTGGTCTGACGCGTACGCAACAACCTTGTCAGGTTTCATTAATACACAATCTAGCTATTTTTTGGATGCATCGCTGTATATCACGTATCTCGCCGAGCTTTTTGGAACCATGAGCACTAGGGCGGACCCTAGTCTTTATTTTAGATCCTGGAAACTAGCCTCATAGGCATCGTCCCACAAGAAAGGTATGCCCTTTTTTGTGAATTGGGTGAGAGACGAGACTATTCTAGCGAAGTCTTGGAAAAACCTTCGATAGTAACCTGCCAATCTCAAGAAACTTCGTACCTCGGTGACCATAGTTAGGCATTCCCATTTCATGACCACTTCTATCTTGGTGGGATCTACTGAAATTCCTTCTTTAGACACTATGTATCCCAAGAATGAAACCTGTCGTTGCCAAAATTCACATTTTGAGAATTTGGCATGCAACTTATTCTTCCTCAAGATAATTAGGACCTTTTCAAGGTGTTCTTGGTCCATTTTCAAGTATATTAGGATATCTTCTATGAACACGATCACAAACGTGTTTAGGAACGTAATTGATTGAGCAATTGATAGATGATCTAGGGGTTCGGTTCCGTAGGAACTTTTTATATTCGGATTTCGAAAAGAATTAGTAAACCCCATCTTTAACGTTTGAACCATGATATGAAATGAGTTCGATAAAACCTTTGCATTTCAACGAATTTACATGATACATCAGAACAAGCATTTCTAGGATTTAATGATTTATAAAGGTGGAGTCATCCTGTTAACTATCCGCGTTGATTTGGTAATAAGATAATAACGAATAGAAAAAAATTAATGGCTTGGATCGTGTATCAACAGTCACTCCCCGGTAGAGGTAGAGGATAAGGTTCCATGGGAACAATTATTTATTTCTATTTCAGCTCGTCTCTTTTTTTTTCTTAAAAAAAGCGAGCGAGGAAGTGGGGGGAGAAATGACAAGAAGATATTGGAACATCCATTTGGAAGAGATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGGTATTCATATTATAAATCTTACTAGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTAGGGGCAAACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCGGATTCAGTAGCCCGGGCTGCAACAAGGGCTCGGTGTCATTATGTTAATAAAAAATGGCTCGGGGGGATGTTAACAAATTGGTCTACTACCGAAACGAGACTTCATAAGTTCAGGGACTTGAGAACGGAACAAAAGACGGGGGGACTCAACCGTCTTCCGAAAAGGGATGTCGCTATGTTGAAGAGACAATTATCTCACTTGCAAACATATCGGTTCAAATCCGCTATTGTAAATAAGTCTAATGTGTCGGAAATGGCCGGGATAGCTCAGTTGGTAAAGTAGAGGACTGAAAATCCTCGTGTCACCCGTTCAAATCTGGTTCTTGGCACATCATGAATTTGTATGCGTATCTATTCTACAGATTCATTAATAAAATAGATCATGATGTCTGGAAATATACCCTTCAACTAAACTATATATATTTTTTACTCTATTTATAGATGAGTAA

mRNA sequence

ATGGATCACCTTCTATGGATTTTACTACATTACTTATCTTATGAAGCTTGTGAACATCATAATACTTCCATGGATACCTTCGCGACTATTGCTCGACATTTGTTAGGCAAAGTCGCCGATCTCAAGCACATGGCTCGCTGCTGTGACAACTTACTCAATGGCAACTTAGACTTAAAAAAATTTGTCAAGCTAATCCATCTCGTCTCTTTTTTTTTCTTAAAAAAAGCGAGCGAGGAAGTGGGGGGAGAAATGACAAGAAGATATTGGAACATCCATTTGGAAGAGATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGGTATTCATATTATAAATCTTACTAGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTAGGGGCAAACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCGGATTCAGTAGCCCGGGCTGCAACAAGGGCTCGGTGTCATTATGTTAATAAAAAATGGCTCGGGGGGATGTTAACAAATTGGTCTACTACCGAAACGAGACTTCATAAGTTCAGGGACTTGAGAACGGAACAAAAGACGGGGGGACTCAACCATGAGTAA

Coding sequence (CDS)

ATGGATCACCTTCTATGGATTTTACTACATTACTTATCTTATGAAGCTTGTGAACATCATAATACTTCCATGGATACCTTCGCGACTATTGCTCGACATTTGTTAGGCAAAGTCGCCGATCTCAAGCACATGGCTCGCTGCTGTGACAACTTACTCAATGGCAACTTAGACTTAAAAAAATTTGTCAAGCTAATCCATCTCGTCTCTTTTTTTTTCTTAAAAAAAGCGAGCGAGGAAGTGGGGGGAGAAATGACAAGAAGATATTGGAACATCCATTTGGAAGAGATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGGTATTCATATTATAAATCTTACTAGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTAGGGGCAAACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCGGATTCAGTAGCCCGGGCTGCAACAAGGGCTCGGTGTCATTATGTTAATAAAAAATGGCTCGGGGGGATGTTAACAAATTGGTCTACTACCGAAACGAGACTTCATAAGTTCAGGGACTTGAGAACGGAACAAAAGACGGGGGGACTCAACCATGAGTAA

Protein sequence

MDHLLWILLHYLSYEACEHHNTSMDTFATIARHLLGKVADLKHMARCCDNLLNGNLDLKKFVKLIHLVSFFFLKKASEEVGGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNHE

Homology

[Close]

BLAST of CmoCh10G011110 vs. ExPASy Swiss-Prot
Match: Q4VZP4 (30S ribosomal protein S2, chloroplastic OS=Cucumis sativus OX=3659 GN=rps2 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 2.7e-72
Identity = 129/131 (98.47%), Postives = 130/131 (99.24%), Query Frame = 0


Query: 84  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 143
           MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 144 VFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 203
           VFDAA+RGKQFLIVGTKNKAADSVARAATR RCHYVNKKWLGGMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 204 LRTEQKTGGLN 215
           LRTEQKTGGLN
Sbjct: 121 LRTEQKTGGLN 131

[Close]

BLAST of CmoCh10G011110 vs. ExPASy Swiss-Prot
Match: B1A924 (30S ribosomal protein S2, chloroplastic OS=Carica papaya OX=3649 GN=rps2 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.7e-69
Identity = 125/131 (95.42%), Postives = 127/131 (96.95%), Query Frame = 0


Query: 84  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 143
           M +RYWNI+LEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLTRTARFLSEACDL
Sbjct: 1   MAKRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDL 60

Query: 144 VFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 203
           VFDAASRGKQFLIVGTKNKAADSVARAA RARCHYVNKKWLGGMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 204 LRTEQKTGGLN 215
           LRTEQKTG LN
Sbjct: 121 LRTEQKTGRLN 131

[Close]

BLAST of CmoCh10G011110 vs. ExPASy Swiss-Prot
Match: Q49L09 (30S ribosomal protein S2, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rps2 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.7e-69
Identity = 125/131 (95.42%), Postives = 127/131 (96.95%), Query Frame = 0


Query: 84  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 143
           MTRRYWNI+LEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLT+TARFLSEACDL
Sbjct: 1   MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTKTARFLSEACDL 60

Query: 144 VFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 203
           VFDAASRGKQFLIVGTKNKAADSVARAA RARCHYVNKKWLGGMLTNWSTTETRLHKFRD
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 120

Query: 204 LRTEQKTGGLN 215
           LRTEQK G LN
Sbjct: 121 LRTEQKAGRLN 131

[Close]

BLAST of CmoCh10G011110 vs. ExPASy Swiss-Prot
Match: A0ZZ24 (30S ribosomal protein S2, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps2 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.7e-69
Identity = 124/131 (94.66%), Postives = 127/131 (96.95%), Query Frame = 0


Query: 84  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 143
           M RRYWNI+LEEM+EAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLTRTARFLSEACDL
Sbjct: 1   MARRYWNINLEEMLEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDL 60

Query: 144 VFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 203
           VFDAAS+GKQFLIVGTKNKAADSVARAA RARCHYVNKKWLGGMLTNW TTETRLHKFRD
Sbjct: 61  VFDAASKGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWPTTETRLHKFRD 120

Query: 204 LRTEQKTGGLN 215
           LRTEQKTGGLN
Sbjct: 121 LRTEQKTGGLN 131

[Close]

BLAST of CmoCh10G011110 vs. ExPASy Swiss-Prot
Match: Q2L8Z6 (30S ribosomal protein S2, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps2 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.7e-69
Identity = 124/131 (94.66%), Postives = 127/131 (96.95%), Query Frame = 0


Query: 84  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 143
           M RRYWNI+LEEM+EAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLTRTARFLSEACDL
Sbjct: 1   MARRYWNINLEEMLEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDL 60

Query: 144 VFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 203
           VFDAAS+GKQFLIVGTKNKAADSVARAA RARCHYVNKKWLGGMLTNW TTETRLHKFRD
Sbjct: 61  VFDAASKGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWPTTETRLHKFRD 120

Query: 204 LRTEQKTGGLN 215
           LRTEQKTGGLN
Sbjct: 121 LRTEQKTGGLN 131

[Close]

BLAST of CmoCh10G011110 vs. ExPASy TrEMBL
Match: A0A6M3W1W6 (30S ribosomal protein S2, chloroplastic OS=Cucumis melo OX=3656 GN=rps2 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.4e-74
Identity = 138/146 (94.52%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 69  SFFFLKKASEEVGGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHII 128
           S  FL+K SEEVGGEMTRRYWNIHL EMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHII
Sbjct: 11  SSLFLRKKSEEVGGEMTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHII 70

Query: 129 NLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGML 188
           NLT+TARFLSEACDLVFDAA+RGKQFLIVGTKNKAADSVARAATR RCHYVNKKWLGGML
Sbjct: 71  NLTQTARFLSEACDLVFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGML 130

Query: 189 TNWSTTETRLHKFRDLRTEQKTGGLN 215
           TNWSTTETRLHKFRDLRTEQKTGGLN
Sbjct: 131 TNWSTTETRLHKFRDLRTEQKTGGLN 156

[Close]

BLAST of CmoCh10G011110 vs. ExPASy TrEMBL
Match: A0A7S7BHS8 (Ribosomal protein S2 OS=Syzygium nervosum OX=219895 GN=rps2 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.8e-71
Identity = 135/149 (90.60%), Postives = 141/149 (94.63%), Query Frame = 0


Query: 66  HLVSFFFLKKASEEVGGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGI 125
           +LV+FFF KK   + GGEMTRRYWNI+LEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGI
Sbjct: 12  NLVAFFFFKK-KRKWGGEMTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGI 71

Query: 126 HIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLG 185
           HI NLT+TARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAA RARCHYVNKKWLG
Sbjct: 72  HITNLTKTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLG 131

Query: 186 GMLTNWSTTETRLHKFRDLRTEQKTGGLN 215
           GMLTNWSTTETRLH+FRDLRTEQKTG LN
Sbjct: 132 GMLTNWSTTETRLHEFRDLRTEQKTGRLN 159

[Close]

BLAST of CmoCh10G011110 vs. ExPASy TrEMBL
Match: A0A7T7CN63 (Ribosomal protein S2 OS=Ulmus pumila OX=198266 GN=rps2 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 2.4e-71
Identity = 134/145 (92.41%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 70  FFFLKKASEEVGGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIIN 129
           FFFLKK  E+V  EMTRRYWNI+ EEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIIN
Sbjct: 39  FFFLKKKREKVWREMTRRYWNINFEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIIN 98

Query: 130 LTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLT 189
           LTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAA +ARCHYVNKKWLGGMLT
Sbjct: 99  LTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIKARCHYVNKKWLGGMLT 158

Query: 190 NWSTTETRLHKFRDLRTEQKTGGLN 215
           NW TTETRLHKFRDLRTEQKTG LN
Sbjct: 159 NWYTTETRLHKFRDLRTEQKTGRLN 183

[Close]

BLAST of CmoCh10G011110 vs. ExPASy TrEMBL
Match: A0A7L9R7N3 (30S ribosomal protein S2, chloroplastic OS=Elaeocarpus japonicus OX=1008907 GN=rps2 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 4.1e-71
Identity = 136/152 (89.47%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 66  HLVSFFFLKKASE--EVGGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK 125
           +LVSFFF +K  E  EVGGEMTRRYWNIHLEEMM AGVHFGHGTRKWNPRMAPYIS KRK
Sbjct: 24  YLVSFFFNEKNKERGEVGGEMTRRYWNIHLEEMMGAGVHFGHGTRKWNPRMAPYISTKRK 83

Query: 126 GIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKW 185
           GIHI NLTRTARFLSEACDLVFDAA RGKQFLIVGTKNKAADSVARAA RAR HYVNKKW
Sbjct: 84  GIHITNLTRTARFLSEACDLVFDAAKRGKQFLIVGTKNKAADSVARAAIRARSHYVNKKW 143

Query: 186 LGGMLTNWSTTETRLHKFRDLRTEQKTGGLNH 216
           LGG+LTNWSTTETRLHKFRDLR EQKTG LNH
Sbjct: 144 LGGILTNWSTTETRLHKFRDLRMEQKTGKLNH 175

[Close]

BLAST of CmoCh10G011110 vs. ExPASy TrEMBL
Match: A0A4D6NNC8 (Multifunctional fusion protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g731 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 9.1e-71
Identity = 139/167 (83.23%), Postives = 146/167 (87.43%), Query Frame = 0


Query: 52   LNGNLD----LKKFVKLIHLVSFFFLKKASEEVGGEMTRRYWNIHLEEMMEAGVHFGHGT 111
            L G +D    LK+ V L  ++     KK  +EV GEMTRRYWNI+LEEMMEAGVHFGHGT
Sbjct: 3053 LRGRIDWLKGLKENVVLGGMIPVEKKKKRRKEVWGEMTRRYWNINLEEMMEAGVHFGHGT 3112

Query: 112  RKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSV 171
            RKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSV
Sbjct: 3113 RKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSV 3172

Query: 172  ARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 215
            ARAA +ARCHYVNKKWLGGMLTNW TTETRLHKFRDLRTEQKTG LN
Sbjct: 3173 ARAAIKARCHYVNKKWLGGMLTNWYTTETRLHKFRDLRTEQKTGRLN 3219

[Close]

BLAST of CmoCh10G011110 vs. NCBI nr
Match: QJF46372.1 (ribosomal protein S2 [Cucumis melo])

HSP 1 Score: 289.3 bits (739), Expect = 2.8e-74
Identity = 138/146 (94.52%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 69  SFFFLKKASEEVGGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHII 128
           S  FL+K SEEVGGEMTRRYWNIHL EMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHII
Sbjct: 11  SSLFLRKKSEEVGGEMTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHII 70

Query: 129 NLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGML 188
           NLT+TARFLSEACDLVFDAA+RGKQFLIVGTKNKAADSVARAATR RCHYVNKKWLGGML
Sbjct: 71  NLTQTARFLSEACDLVFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGML 130

Query: 189 TNWSTTETRLHKFRDLRTEQKTGGLN 215
           TNWSTTETRLHKFRDLRTEQKTGGLN
Sbjct: 131 TNWSTTETRLHKFRDLRTEQKTGGLN 156

[Close]

BLAST of CmoCh10G011110 vs. NCBI nr
Match: QVV95934.1 (ribosomal protein S2 [Spiraea trilobata])

HSP 1 Score: 282.3 bits (721), Expect = 3.4e-72
Identity = 140/173 (80.92%), Postives = 148/173 (85.55%), Query Frame = 0


Query: 53  NGNLDLKKFV----------KLIHLVSFFFLKKASEEVGGEMTRRYWNIHLEEMMEAGVH 112
           NG   LK+ V          +++HL  FF  K+  +EV  EMTRRYWNI+LEEMMEAGVH
Sbjct: 10  NGQFPLKEKVPWEQLGIHIFRVLHLFFFFEKKREDKEVWREMTRRYWNINLEEMMEAGVH 69

Query: 113 FGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNK 172
           FGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNK
Sbjct: 70  FGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNK 129

Query: 173 AADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNH 216
           AADSVARAA +ARCHYVNKKWLGGMLTNW TTETRLHKFRDLRTEQKTG LNH
Sbjct: 130 AADSVARAAIKARCHYVNKKWLGGMLTNWYTTETRLHKFRDLRTEQKTGRLNH 182

[Close]

BLAST of CmoCh10G011110 vs. NCBI nr
Match: YP_010034235.1 (ribosomal protein S2 [Syzygium nervosum] >QOW83837.1 ribosomal protein S2 [Syzygium nervosum])

HSP 1 Score: 278.9 bits (712), Expect = 3.8e-71
Identity = 135/149 (90.60%), Postives = 141/149 (94.63%), Query Frame = 0


Query: 66  HLVSFFFLKKASEEVGGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGI 125
           +LV+FFF KK   + GGEMTRRYWNI+LEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGI
Sbjct: 12  NLVAFFFFKK-KRKWGGEMTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGI 71

Query: 126 HIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLG 185
           HI NLT+TARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAA RARCHYVNKKWLG
Sbjct: 72  HITNLTKTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLG 131

Query: 186 GMLTNWSTTETRLHKFRDLRTEQKTGGLN 215
           GMLTNWSTTETRLH+FRDLRTEQKTG LN
Sbjct: 132 GMLTNWSTTETRLHEFRDLRTEQKTGRLN 159

[Close]

BLAST of CmoCh10G011110 vs. NCBI nr
Match: QQK90302.1 (ribosomal protein S2 [Ulmus pumila])

HSP 1 Score: 278.5 bits (711), Expect = 4.9e-71
Identity = 134/145 (92.41%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 70  FFFLKKASEEVGGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIIN 129
           FFFLKK  E+V  EMTRRYWNI+ EEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIIN
Sbjct: 39  FFFLKKKREKVWREMTRRYWNINFEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIIN 98

Query: 130 LTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLT 189
           LTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAA +ARCHYVNKKWLGGMLT
Sbjct: 99  LTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIKARCHYVNKKWLGGMLT 158

Query: 190 NWSTTETRLHKFRDLRTEQKTGGLN 215
           NW TTETRLHKFRDLRTEQKTG LN
Sbjct: 159 NWYTTETRLHKFRDLRTEQKTGRLN 183

[Close]

BLAST of CmoCh10G011110 vs. NCBI nr
Match: YP_010022296.1 (ribosomal protein S2 [Elaeocarpus japonicus] >QOL12549.1 ribosomal protein S2 [Elaeocarpus japonicus])

HSP 1 Score: 277.7 bits (709), Expect = 8.4e-71
Identity = 136/152 (89.47%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 66  HLVSFFFLKKASE--EVGGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRK 125
           +LVSFFF +K  E  EVGGEMTRRYWNIHLEEMM AGVHFGHGTRKWNPRMAPYIS KRK
Sbjct: 24  YLVSFFFNEKNKERGEVGGEMTRRYWNIHLEEMMGAGVHFGHGTRKWNPRMAPYISTKRK 83

Query: 126 GIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKW 185
           GIHI NLTRTARFLSEACDLVFDAA RGKQFLIVGTKNKAADSVARAA RAR HYVNKKW
Sbjct: 84  GIHITNLTRTARFLSEACDLVFDAAKRGKQFLIVGTKNKAADSVARAAIRARSHYVNKKW 143

Query: 186 LGGMLTNWSTTETRLHKFRDLRTEQKTGGLNH 216
           LGG+LTNWSTTETRLHKFRDLR EQKTG LNH
Sbjct: 144 LGGILTNWSTTETRLHKFRDLRMEQKTGKLNH 175

[Close]

BLAST of CmoCh10G011110 vs. TAIR 10
Match: ATCG00160.1 (ribosomal protein S2 )

HSP 1 Score: 256.5 bits (654), Expect = 1.9e-68
Identity = 122/131 (93.13%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 84  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 143
           MT+RYWNI LEEMM AGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL
Sbjct: 1   MTKRYWNIDLEEMMRAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 144 VFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRD 203
           VFDAASRGKQFLIVGTKNKAAD V+RAA RARCHYVNKKWLGGMLTNWSTTE RLHKFRD
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADLVSRAAIRARCHYVNKKWLGGMLTNWSTTEKRLHKFRD 120

Query: 204 LRTEQKTGGLN 215
           LRTEQKT G N
Sbjct: 121 LRTEQKTEGFN 131

The following BLAST results are available for this feature:

BLAST of CmoCh10G011110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP4	2.7e-72	98.47	30S ribosomal protein S2, chloroplastic OS=Cucumis sativus OX=3659 GN=rps2 PE=3 ...	[more]
B1A924	3.7e-69	95.42	30S ribosomal protein S2, chloroplastic OS=Carica papaya OX=3649 GN=rps2 PE=3 SV...	[more]
Q49L09	3.7e-69	95.42	30S ribosomal protein S2, chloroplastic OS=Eucalyptus globulus subsp. globulus O...	[more]
A0ZZ24	3.7e-69	94.66	30S ribosomal protein S2, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps2 ...	[more]
Q2L8Z6	3.7e-69	94.66	30S ribosomal protein S2, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps2 PE...	[more]

BLAST of CmoCh10G011110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6M3W1W6	1.4e-74	94.52	30S ribosomal protein S2, chloroplastic OS=Cucumis melo OX=3656 GN=rps2 PE=3 SV=...	[more]
A0A7S7BHS8	1.8e-71	90.60	Ribosomal protein S2 OS=Syzygium nervosum OX=219895 GN=rps2 PE=4 SV=1	[more]
A0A7T7CN63	2.4e-71	92.41	Ribosomal protein S2 OS=Ulmus pumila OX=198266 GN=rps2 PE=4 SV=1	[more]
A0A7L9R7N3	4.1e-71	89.47	30S ribosomal protein S2, chloroplastic OS=Elaeocarpus japonicus OX=1008907 GN=r...	[more]
A0A4D6NNC8	9.1e-71	83.23	Multifunctional fusion protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g731 PE...	[more]

BLAST of CmoCh10G011110 vs. NCBI nr


Match Name	E-value	Identity	Description
QJF46372.1	2.8e-74	94.52	ribosomal protein S2 [Cucumis melo]	[more]
QVV95934.1	3.4e-72	80.92	ribosomal protein S2 [Spiraea trilobata]	[more]
YP_010034235.1	3.8e-71	90.60	ribosomal protein S2 [Syzygium nervosum] >QOW83837.1 ribosomal protein S2 [Syzyg...	[more]
QQK90302.1	4.9e-71	92.41	ribosomal protein S2 [Ulmus pumila]	[more]
YP_010022296.1	8.4e-71	89.47	ribosomal protein S2 [Elaeocarpus japonicus] >QOL12549.1 ribosomal protein S2 [E...	[more]

BLAST of CmoCh10G011110 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00160.1	1.9e-68	93.13	ribosomal protein S2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001865	Ribosomal protein S2	PRINTS	PR00395	RIBOSOMALS2	coord: 174..191 score: 46.92 coord: 93..111 score: 46.72 coord: 124..133 score: 61.69
IPR001865	Ribosomal protein S2	PFAM	PF00318	Ribosomal_S2	coord: 96..212 e-value: 2.1E-42 score: 144.8
IPR001865	Ribosomal protein S2	CDD	cd01425	RPS2	coord: 96..208 e-value: 2.86087E-52 score: 165.062
IPR005706	Ribosomal protein S2, bacteria/mitochondria/plastid	TIGRFAM	TIGR01011	TIGR01011	coord: 91..212 e-value: 8.5E-42 score: 140.9
IPR005706	Ribosomal protein S2, bacteria/mitochondria/plastid	PANTHER	PTHR12534	30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR	coord: 83..210
IPR005706	Ribosomal protein S2, bacteria/mitochondria/plastid	HAMAP	MF_00291_B	Ribosomal_S2_B	coord: 89..213 score: 12.444423
None	No IPR available	GENE3D	1.10.287.610	Helix hairpin bin	coord: 190..214 e-value: 2.2E-53 score: 182.5
None	No IPR available	GENE3D	3.40.50.10490		coord: 95..189 e-value: 2.2E-53 score: 182.5
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00962	RIBOSOMAL_S2_1	coord: 93..104
IPR023591	Ribosomal protein S2, flavodoxin-like domain superfamily	SUPERFAMILY	52313	Ribosomal protein S2	coord: 93..214

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G011110.1	CmoCh10G011110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0006412	translation
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
molecular_function	GO:0032549	ribonucleoside binding
molecular_function	GO:0003735	structural constituent of ribosome